Experiment: nitrate 45 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3719 and Ac3H11_3720 are separated by 160 nucleotides Ac3H11_3720 and Ac3H11_3721 are separated by 583 nucleotides Ac3H11_3721 and Ac3H11_3722 are separated by 59 nucleotides
Ac3H11_3719 - FIG00978734: hypothetical protein, at 78,394 to 79,617
_3719
Ac3H11_3720 - Uncharacterized PLP-dependent aminotransferase YfdZ, at 79,778 to 81,004
_3720
Ac3H11_3721 - hypothetical protein, at 81,588 to 81,779
_3721
Ac3H11_3722 - Urease accessory protein UreD, at 81,839 to 82,675
_3722
Position (kb) 79
80
81
82 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 79.111 kb on + strand, within Ac3H11_3719 at 79.111 kb on + strand, within Ac3H11_3719 at 79.111 kb on + strand, within Ac3H11_3719 at 79.111 kb on + strand, within Ac3H11_3719 at 79.111 kb on + strand, within Ac3H11_3719 at 79.112 kb on - strand, within Ac3H11_3719 at 79.512 kb on + strand at 79.554 kb on + strand at 79.554 kb on + strand at 79.555 kb on - strand at 79.700 kb on + strand at 79.700 kb on + strand at 79.700 kb on + strand at 79.701 kb on - strand at 79.833 kb on - strand at 79.833 kb on - strand at 79.985 kb on + strand, within Ac3H11_3720 at 80.036 kb on + strand, within Ac3H11_3720 at 80.036 kb on + strand, within Ac3H11_3720 at 80.036 kb on + strand, within Ac3H11_3720 at 80.037 kb on - strand, within Ac3H11_3720 at 80.172 kb on - strand, within Ac3H11_3720 at 80.187 kb on - strand, within Ac3H11_3720 at 80.187 kb on - strand, within Ac3H11_3720 at 80.187 kb on - strand, within Ac3H11_3720 at 80.187 kb on - strand, within Ac3H11_3720 at 80.283 kb on - strand, within Ac3H11_3720 at 80.283 kb on - strand, within Ac3H11_3720 at 80.283 kb on - strand, within Ac3H11_3720 at 80.409 kb on + strand, within Ac3H11_3720 at 80.410 kb on - strand, within Ac3H11_3720 at 80.414 kb on + strand, within Ac3H11_3720 at 80.414 kb on + strand, within Ac3H11_3720 at 80.415 kb on - strand, within Ac3H11_3720 at 80.429 kb on + strand, within Ac3H11_3720 at 80.429 kb on + strand, within Ac3H11_3720 at 80.430 kb on - strand, within Ac3H11_3720 at 80.513 kb on + strand, within Ac3H11_3720 at 80.514 kb on - strand, within Ac3H11_3720 at 80.591 kb on + strand, within Ac3H11_3720 at 80.592 kb on - strand, within Ac3H11_3720 at 80.600 kb on + strand, within Ac3H11_3720 at 80.708 kb on + strand, within Ac3H11_3720 at 80.708 kb on + strand, within Ac3H11_3720 at 80.708 kb on + strand, within Ac3H11_3720 at 80.708 kb on + strand, within Ac3H11_3720 at 80.709 kb on - strand, within Ac3H11_3720 at 80.709 kb on - strand, within Ac3H11_3720 at 80.709 kb on - strand, within Ac3H11_3720 at 80.709 kb on - strand, within Ac3H11_3720 at 80.709 kb on - strand, within Ac3H11_3720 at 80.762 kb on + strand, within Ac3H11_3720 at 80.762 kb on + strand, within Ac3H11_3720 at 80.762 kb on + strand, within Ac3H11_3720 at 80.762 kb on + strand, within Ac3H11_3720 at 80.762 kb on + strand, within Ac3H11_3720 at 80.762 kb on + strand, within Ac3H11_3720 at 80.762 kb on + strand, within Ac3H11_3720 at 80.763 kb on - strand, within Ac3H11_3720 at 80.763 kb on - strand, within Ac3H11_3720 at 80.763 kb on - strand, within Ac3H11_3720 at 80.763 kb on - strand, within Ac3H11_3720 at 80.763 kb on - strand, within Ac3H11_3720 at 80.888 kb on + strand at 80.888 kb on + strand at 80.888 kb on + strand at 80.888 kb on + strand at 80.888 kb on + strand at 80.888 kb on + strand at 80.888 kb on + strand at 80.889 kb on - strand at 80.889 kb on - strand at 80.889 kb on - strand at 80.889 kb on - strand at 80.889 kb on - strand at 80.889 kb on - strand at 80.889 kb on - strand at 81.007 kb on + strand at 81.007 kb on + strand at 81.007 kb on + strand at 81.007 kb on + strand at 81.007 kb on + strand at 81.008 kb on - strand at 81.008 kb on - strand at 81.036 kb on + strand at 81.037 kb on - strand at 81.037 kb on - strand at 81.131 kb on + strand at 81.131 kb on + strand at 81.172 kb on + strand at 81.172 kb on + strand at 81.173 kb on - strand at 81.173 kb on - strand at 81.173 kb on - strand at 81.173 kb on - strand at 81.173 kb on - strand at 81.203 kb on - strand at 81.203 kb on - strand at 81.203 kb on - strand at 81.214 kb on + strand at 81.215 kb on - strand at 81.215 kb on - strand at 81.215 kb on - strand at 81.215 kb on - strand at 81.299 kb on + strand at 81.299 kb on + strand at 81.300 kb on - strand at 81.325 kb on + strand at 81.368 kb on - strand at 81.389 kb on + strand at 81.390 kb on - strand at 81.390 kb on - strand at 81.410 kb on + strand at 81.410 kb on + strand at 81.410 kb on + strand at 81.410 kb on + strand at 81.410 kb on + strand at 81.411 kb on - strand at 81.411 kb on - strand at 81.432 kb on + strand at 81.432 kb on + strand at 81.433 kb on - strand at 81.433 kb on - strand at 81.436 kb on + strand at 81.436 kb on + strand at 81.436 kb on + strand at 81.437 kb on - strand at 81.437 kb on - strand at 81.541 kb on + strand at 81.541 kb on + strand at 81.541 kb on + strand at 81.541 kb on + strand at 81.542 kb on - strand at 81.542 kb on - strand at 81.636 kb on + strand, within Ac3H11_3721 at 81.637 kb on - strand, within Ac3H11_3721 at 81.690 kb on + strand, within Ac3H11_3721 at 81.690 kb on + strand, within Ac3H11_3721 at 81.691 kb on - strand, within Ac3H11_3721 at 81.691 kb on - strand, within Ac3H11_3721 at 81.711 kb on + strand, within Ac3H11_3721 at 81.712 kb on - strand, within Ac3H11_3721 at 81.712 kb on - strand, within Ac3H11_3721 at 81.712 kb on - strand, within Ac3H11_3721 at 81.712 kb on - strand, within Ac3H11_3721 at 81.712 kb on - strand, within Ac3H11_3721 at 81.712 kb on - strand, within Ac3H11_3721 at 81.713 kb on + strand, within Ac3H11_3721 at 81.713 kb on + strand, within Ac3H11_3721 at 81.713 kb on + strand, within Ac3H11_3721 at 81.713 kb on + strand, within Ac3H11_3721 at 81.713 kb on + strand, within Ac3H11_3721 at 81.713 kb on + strand, within Ac3H11_3721 at 81.713 kb on + strand, within Ac3H11_3721 at 81.714 kb on - strand, within Ac3H11_3721 at 81.714 kb on - strand, within Ac3H11_3721 at 81.714 kb on - strand, within Ac3H11_3721 at 81.714 kb on - strand, within Ac3H11_3721 at 81.714 kb on - strand, within Ac3H11_3721 at 81.714 kb on - strand, within Ac3H11_3721 at 81.779 kb on + strand at 81.779 kb on + strand at 81.779 kb on + strand at 81.779 kb on + strand at 81.779 kb on + strand at 81.780 kb on - strand at 81.780 kb on - strand at 81.780 kb on - strand at 81.780 kb on - strand at 81.780 kb on - strand at 81.840 kb on + strand at 81.840 kb on + strand at 81.840 kb on + strand at 81.840 kb on + strand at 81.841 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 45 mM remove 79,111 + Ac3H11_3719 0.59 +0.1 79,111 + Ac3H11_3719 0.59 +0.7 79,111 + Ac3H11_3719 0.59 +1.2 79,111 + Ac3H11_3719 0.59 +0.1 79,111 + Ac3H11_3719 0.59 -0.9 79,112 - Ac3H11_3719 0.59 -1.5 79,512 + -0.6 79,554 + +0.3 79,554 + -0.4 79,555 - +0.9 79,700 + +2.2 79,700 + +0.0 79,700 + +0.4 79,701 - -1.5 79,833 - -1.1 79,833 - -0.1 79,985 + Ac3H11_3720 0.17 +1.1 80,036 + Ac3H11_3720 0.21 -0.5 80,036 + Ac3H11_3720 0.21 +1.3 80,036 + Ac3H11_3720 0.21 -0.4 80,037 - Ac3H11_3720 0.21 +1.1 80,172 - Ac3H11_3720 0.32 -0.8 80,187 - Ac3H11_3720 0.33 +0.3 80,187 - Ac3H11_3720 0.33 +0.5 80,187 - Ac3H11_3720 0.33 +0.3 80,187 - Ac3H11_3720 0.33 -0.2 80,283 - Ac3H11_3720 0.41 -0.2 80,283 - Ac3H11_3720 0.41 +0.1 80,283 - Ac3H11_3720 0.41 -0.6 80,409 + Ac3H11_3720 0.51 +0.3 80,410 - Ac3H11_3720 0.52 +0.2 80,414 + Ac3H11_3720 0.52 -0.2 80,414 + Ac3H11_3720 0.52 +1.0 80,415 - Ac3H11_3720 0.52 -1.5 80,429 + Ac3H11_3720 0.53 +1.9 80,429 + Ac3H11_3720 0.53 -1.8 80,430 - Ac3H11_3720 0.53 -0.5 80,513 + Ac3H11_3720 0.60 +1.0 80,514 - Ac3H11_3720 0.60 -2.5 80,591 + Ac3H11_3720 0.66 +0.0 80,592 - Ac3H11_3720 0.66 -0.2 80,600 + Ac3H11_3720 0.67 +0.4 80,708 + Ac3H11_3720 0.76 +0.9 80,708 + Ac3H11_3720 0.76 +1.4 80,708 + Ac3H11_3720 0.76 +0.1 80,708 + Ac3H11_3720 0.76 -0.4 80,709 - Ac3H11_3720 0.76 +2.4 80,709 - Ac3H11_3720 0.76 -0.2 80,709 - Ac3H11_3720 0.76 +0.7 80,709 - Ac3H11_3720 0.76 +0.4 80,709 - Ac3H11_3720 0.76 +0.8 80,762 + Ac3H11_3720 0.80 +0.4 80,762 + Ac3H11_3720 0.80 -0.0 80,762 + Ac3H11_3720 0.80 +0.6 80,762 + Ac3H11_3720 0.80 +0.3 80,762 + Ac3H11_3720 0.80 +0.3 80,762 + Ac3H11_3720 0.80 -0.2 80,762 + Ac3H11_3720 0.80 -1.1 80,763 - Ac3H11_3720 0.80 +0.0 80,763 - Ac3H11_3720 0.80 -0.8 80,763 - Ac3H11_3720 0.80 +0.2 80,763 - Ac3H11_3720 0.80 +1.3 80,763 - Ac3H11_3720 0.80 +1.2 80,888 + -1.0 80,888 + -1.2 80,888 + -0.3 80,888 + +0.9 80,888 + -2.6 80,888 + -2.3 80,888 + -0.6 80,889 - +0.0 80,889 - -0.5 80,889 - -1.0 80,889 - +1.4 80,889 - +0.2 80,889 - +1.3 80,889 - +4.0 81,007 + -0.3 81,007 + +0.3 81,007 + -0.0 81,007 + -0.8 81,007 + -1.5 81,008 - -0.8 81,008 - +0.3 81,036 + -1.4 81,037 - -1.1 81,037 - -0.1 81,131 + +0.8 81,131 + +0.6 81,172 + -0.9 81,172 + +0.2 81,173 - -0.7 81,173 - +0.1 81,173 - +0.6 81,173 - -0.3 81,173 - -0.1 81,203 - -0.6 81,203 - +0.6 81,203 - +0.7 81,214 + -0.8 81,215 - +0.1 81,215 - -0.0 81,215 - -0.0 81,215 - +1.5 81,299 + -0.2 81,299 + +0.1 81,300 - +0.1 81,325 + +0.8 81,368 - -0.3 81,389 + +1.1 81,390 - -0.2 81,390 - +1.1 81,410 + -0.3 81,410 + -0.9 81,410 + -0.5 81,410 + -0.6 81,410 + -0.2 81,411 - +0.2 81,411 - -0.5 81,432 + -0.3 81,432 + -0.2 81,433 - +0.5 81,433 - -0.1 81,436 + +0.5 81,436 + +0.3 81,436 + -0.1 81,437 - +0.5 81,437 - +0.7 81,541 + -0.5 81,541 + +0.2 81,541 + +0.7 81,541 + -0.9 81,542 - +1.4 81,542 - -0.0 81,636 + Ac3H11_3721 0.25 -0.5 81,637 - Ac3H11_3721 0.26 +2.2 81,690 + Ac3H11_3721 0.53 -1.8 81,690 + Ac3H11_3721 0.53 -0.1 81,691 - Ac3H11_3721 0.54 -0.4 81,691 - Ac3H11_3721 0.54 +1.1 81,711 + Ac3H11_3721 0.64 -0.1 81,712 - Ac3H11_3721 0.65 -0.3 81,712 - Ac3H11_3721 0.65 -0.5 81,712 - Ac3H11_3721 0.65 -0.6 81,712 - Ac3H11_3721 0.65 -1.1 81,712 - Ac3H11_3721 0.65 +0.6 81,712 - Ac3H11_3721 0.65 -0.2 81,713 + Ac3H11_3721 0.65 +0.3 81,713 + Ac3H11_3721 0.65 +1.2 81,713 + Ac3H11_3721 0.65 -0.1 81,713 + Ac3H11_3721 0.65 +1.3 81,713 + Ac3H11_3721 0.65 +0.0 81,713 + Ac3H11_3721 0.65 +0.1 81,713 + Ac3H11_3721 0.65 +0.0 81,714 - Ac3H11_3721 0.66 +0.3 81,714 - Ac3H11_3721 0.66 +0.4 81,714 - Ac3H11_3721 0.66 +0.0 81,714 - Ac3H11_3721 0.66 -0.0 81,714 - Ac3H11_3721 0.66 +0.3 81,714 - Ac3H11_3721 0.66 -1.8 81,779 + -0.1 81,779 + +1.0 81,779 + +0.0 81,779 + +0.8 81,779 + -0.3 81,780 - +0.1 81,780 - -0.1 81,780 - +0.1 81,780 - -0.6 81,780 - +0.2 81,840 + -0.5 81,840 + -0.3 81,840 + -1.1 81,840 + -0.6 81,841 - +0.8
Or see this region's nucleotide sequence