Experiment: nitrate 45 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3585 and Ac3H11_3586 are separated by 37 nucleotides Ac3H11_3586 and Ac3H11_3587 are separated by 39 nucleotides Ac3H11_3587 and Ac3H11_3588 are separated by 27 nucleotides Ac3H11_3588 and Ac3H11_3589 overlap by 4 nucleotides
Ac3H11_3585 - Permeases of the major facilitator superfamily, at 139,311 to 139,877
_3585
Ac3H11_3586 - Transcriptional regulator, MerR family, at 139,915 to 140,358
_3586
Ac3H11_3587 - DNA-binding domain of ModE / Molybdate-binding domain of ModE, at 140,398 to 141,192
_3587
Ac3H11_3588 - hypothetical protein, at 141,220 to 141,336
_3588
Ac3H11_3589 - FIG00538094: hypothetical protein, at 141,333 to 142,502
_3589
Position (kb) 140
141
142 Strain fitness (log2 ratio) -2
-1
0
1 at 139.579 kb on + strand, within Ac3H11_3585 at 139.867 kb on + strand at 139.868 kb on - strand at 139.972 kb on + strand, within Ac3H11_3586 at 139.973 kb on - strand, within Ac3H11_3586 at 139.973 kb on - strand, within Ac3H11_3586 at 140.525 kb on - strand, within Ac3H11_3587 at 141.315 kb on - strand, within Ac3H11_3588 at 141.364 kb on + strand at 141.365 kb on - strand at 142.003 kb on + strand, within Ac3H11_3589
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 45 mM remove 139,579 + Ac3H11_3585 0.47 +0.0 139,867 + -1.1 139,868 - -0.7 139,972 + Ac3H11_3586 0.13 -0.6 139,973 - Ac3H11_3586 0.13 -0.8 139,973 - Ac3H11_3586 0.13 +1.1 140,525 - Ac3H11_3587 0.16 +1.1 141,315 - Ac3H11_3588 0.81 +0.3 141,364 + +0.5 141,365 - -1.8 142,003 + Ac3H11_3589 0.57 +1.2
Or see this region's nucleotide sequence