Experiment: nitrate 45 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3520 and Ac3H11_3521 are separated by 31 nucleotides Ac3H11_3521 and Ac3H11_3522 are separated by 131 nucleotides Ac3H11_3522 and Ac3H11_3523 are separated by 200 nucleotides
Ac3H11_3520 - TRAP-type C4-dicarboxylate transport system, large permease component, at 64,781 to 66,061
_3520
Ac3H11_3521 - TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter, at 66,093 to 66,662
_3521
Ac3H11_3522 - Fumarylacetoacetate hydrolase family protein, at 66,794 to 68,011
_3522
Ac3H11_3523 - Xylonate dehydratase (EC 4.2.1.82), at 68,212 to 69,993
_3523
Position (kb) 66
67
68
69 Strain fitness (log2 ratio) -1
0
1 at 65.998 kb on - strand at 66.050 kb on - strand at 66.386 kb on - strand, within Ac3H11_3521 at 66.556 kb on + strand, within Ac3H11_3521 at 66.556 kb on + strand, within Ac3H11_3521 at 66.557 kb on - strand, within Ac3H11_3521 at 66.693 kb on + strand at 66.694 kb on - strand at 66.796 kb on - strand at 67.404 kb on - strand, within Ac3H11_3522 at 67.468 kb on - strand, within Ac3H11_3522 at 67.468 kb on - strand, within Ac3H11_3522 at 67.767 kb on + strand, within Ac3H11_3522 at 67.768 kb on - strand, within Ac3H11_3522 at 67.837 kb on - strand, within Ac3H11_3522 at 68.011 kb on + strand at 68.011 kb on + strand at 68.011 kb on + strand at 68.011 kb on + strand at 68.700 kb on - strand, within Ac3H11_3523
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 45 mM remove 65,998 - +0.7 66,050 - -0.8 66,386 - Ac3H11_3521 0.51 -0.3 66,556 + Ac3H11_3521 0.81 -0.6 66,556 + Ac3H11_3521 0.81 -0.0 66,557 - Ac3H11_3521 0.81 +0.6 66,693 + +0.1 66,694 - +0.4 66,796 - +0.3 67,404 - Ac3H11_3522 0.50 -1.5 67,468 - Ac3H11_3522 0.55 +0.7 67,468 - Ac3H11_3522 0.55 -0.3 67,767 + Ac3H11_3522 0.80 +1.4 67,768 - Ac3H11_3522 0.80 -0.7 67,837 - Ac3H11_3522 0.86 +1.5 68,011 + +0.8 68,011 + +0.0 68,011 + -1.3 68,011 + +0.8 68,700 - Ac3H11_3523 0.27 +0.4
Or see this region's nucleotide sequence