Experiment: nitrate 45 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_2738 and Ac3H11_2739 overlap by 4 nucleotides Ac3H11_2739 and Ac3H11_2740 overlap by 4 nucleotides Ac3H11_2740 and Ac3H11_2741 are separated by 287 nucleotides
Ac3H11_2738 - Glutathione peroxidase family protein, at 1,038,150 to 1,038,698
_2738
Ac3H11_2739 - FIG00481831: hypothetical protein, at 1,038,695 to 1,039,228
_2739
Ac3H11_2740 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 1,039,225 to 1,040,109
_2740
Ac3H11_2741 - 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), at 1,040,397 to 1,041,302
_2741
Position (kb)
1039
1040
1041 Strain fitness (log2 ratio)
-1
0
1 at 1038.377 kb on - strand, within Ac3H11_2738 at 1038.571 kb on + strand, within Ac3H11_2738 at 1038.704 kb on + strand at 1038.705 kb on - strand at 1038.715 kb on - strand at 1038.868 kb on - strand, within Ac3H11_2739 at 1039.289 kb on + strand at 1039.289 kb on + strand at 1039.290 kb on - strand at 1040.179 kb on + strand at 1040.200 kb on - strand at 1040.280 kb on + strand at 1040.459 kb on - strand at 1040.511 kb on + strand, within Ac3H11_2741 at 1040.512 kb on - strand, within Ac3H11_2741 at 1041.084 kb on - strand, within Ac3H11_2741
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 45 mM remove 1,038,377 - Ac3H11_2738 0.41 -0.7 1,038,571 + Ac3H11_2738 0.77 -0.9 1,038,704 + -0.6 1,038,705 - -0.3 1,038,715 - -0.4 1,038,868 - Ac3H11_2739 0.32 -1.3 1,039,289 + -1.0 1,039,289 + +0.2 1,039,290 - -1.0 1,040,179 + -0.0 1,040,200 - -0.5 1,040,280 + +0.9 1,040,459 - +0.2 1,040,511 + Ac3H11_2741 0.13 +0.2 1,040,512 - Ac3H11_2741 0.13 -0.8 1,041,084 - Ac3H11_2741 0.76 -1.1
Or see this region's nucleotide sequence