Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2717

Experiment: nitrate 45 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2716 and Ac3H11_2717 are separated by 219 nucleotidesAc3H11_2717 and Ac3H11_2718 are separated by 10 nucleotides Ac3H11_2716 - BarH, at 1,017,301 to 1,018,608 _2716 Ac3H11_2717 - Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13), at 1,018,828 to 1,019,817 _2717 Ac3H11_2718 - Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2), at 1,019,828 to 1,020,925 _2718 Position (kb) 1018 1019 1020Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1017.880 kb on + strand, within Ac3H11_2716at 1018.077 kb on + strand, within Ac3H11_2716at 1018.078 kb on - strand, within Ac3H11_2716at 1018.115 kb on - strand, within Ac3H11_2716at 1018.606 kb on + strandat 1018.670 kb on - strandat 1018.847 kb on - strandat 1018.847 kb on - strandat 1018.880 kb on - strandat 1018.996 kb on + strand, within Ac3H11_2717at 1018.997 kb on - strand, within Ac3H11_2717at 1018.997 kb on - strand, within Ac3H11_2717at 1018.997 kb on - strand, within Ac3H11_2717at 1019.026 kb on + strand, within Ac3H11_2717at 1019.027 kb on - strand, within Ac3H11_2717at 1019.173 kb on + strand, within Ac3H11_2717at 1019.173 kb on + strand, within Ac3H11_2717at 1019.173 kb on + strand, within Ac3H11_2717at 1019.173 kb on + strand, within Ac3H11_2717at 1019.173 kb on + strand, within Ac3H11_2717at 1019.173 kb on + strand, within Ac3H11_2717at 1019.174 kb on - strand, within Ac3H11_2717at 1019.174 kb on - strand, within Ac3H11_2717at 1019.174 kb on - strand, within Ac3H11_2717at 1019.174 kb on - strand, within Ac3H11_2717at 1019.174 kb on - strand, within Ac3H11_2717at 1019.206 kb on - strand, within Ac3H11_2717at 1019.327 kb on - strand, within Ac3H11_2717at 1020.240 kb on + strand, within Ac3H11_2718at 1020.240 kb on + strand, within Ac3H11_2718at 1020.241 kb on - strand, within Ac3H11_2718

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 45 mM
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1,017,880 + Ac3H11_2716 0.44 -0.4
1,018,077 + Ac3H11_2716 0.59 -0.4
1,018,078 - Ac3H11_2716 0.59 +0.0
1,018,115 - Ac3H11_2716 0.62 -0.2
1,018,606 + -0.4
1,018,670 - -0.4
1,018,847 - +0.3
1,018,847 - +1.3
1,018,880 - -1.1
1,018,996 + Ac3H11_2717 0.17 -0.2
1,018,997 - Ac3H11_2717 0.17 +1.3
1,018,997 - Ac3H11_2717 0.17 -3.6
1,018,997 - Ac3H11_2717 0.17 +0.0
1,019,026 + Ac3H11_2717 0.20 -0.2
1,019,027 - Ac3H11_2717 0.20 -0.3
1,019,173 + Ac3H11_2717 0.35 -0.9
1,019,173 + Ac3H11_2717 0.35 +1.5
1,019,173 + Ac3H11_2717 0.35 +0.8
1,019,173 + Ac3H11_2717 0.35 +1.8
1,019,173 + Ac3H11_2717 0.35 +0.2
1,019,173 + Ac3H11_2717 0.35 +0.7
1,019,174 - Ac3H11_2717 0.35 +0.9
1,019,174 - Ac3H11_2717 0.35 +0.5
1,019,174 - Ac3H11_2717 0.35 +0.5
1,019,174 - Ac3H11_2717 0.35 +0.0
1,019,174 - Ac3H11_2717 0.35 -0.3
1,019,206 - Ac3H11_2717 0.38 +0.0
1,019,327 - Ac3H11_2717 0.50 -1.8
1,020,240 + Ac3H11_2718 0.38 -0.1
1,020,240 + Ac3H11_2718 0.38 -1.1
1,020,241 - Ac3H11_2718 0.38 +1.6

Or see this region's nucleotide sequence