Experiment: nitrate 45 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_173 and Ac3H11_174 are separated by 82 nucleotides Ac3H11_174 and Ac3H11_175 are separated by 54 nucleotides
Ac3H11_173 - Related to two-component system sensory/regulatory protein, at 60,845 to 63,046
_173
Ac3H11_174 - Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70), at 63,129 to 63,800
_174
Ac3H11_175 - Permease of the drug/metabolite transporter (DMT) superfamily, at 63,855 to 64,748
_175
Position (kb) 63
64 Strain fitness (log2 ratio) -2
-1
0
1
2 at 62.342 kb on + strand, within Ac3H11_173 at 62.342 kb on + strand, within Ac3H11_173 at 62.343 kb on - strand, within Ac3H11_173 at 62.343 kb on - strand, within Ac3H11_173 at 62.343 kb on - strand, within Ac3H11_173 at 62.343 kb on - strand, within Ac3H11_173 at 62.343 kb on - strand, within Ac3H11_173 at 62.343 kb on - strand, within Ac3H11_173 at 62.543 kb on + strand, within Ac3H11_173 at 62.543 kb on + strand, within Ac3H11_173 at 62.544 kb on - strand, within Ac3H11_173 at 62.544 kb on - strand, within Ac3H11_173 at 62.672 kb on + strand, within Ac3H11_173 at 62.672 kb on + strand, within Ac3H11_173 at 62.672 kb on + strand, within Ac3H11_173 at 62.672 kb on + strand, within Ac3H11_173 at 62.672 kb on + strand, within Ac3H11_173 at 62.672 kb on + strand, within Ac3H11_173 at 62.672 kb on + strand, within Ac3H11_173 at 62.672 kb on + strand, within Ac3H11_173 at 62.673 kb on - strand, within Ac3H11_173 at 62.673 kb on - strand, within Ac3H11_173 at 62.673 kb on - strand, within Ac3H11_173 at 62.673 kb on - strand, within Ac3H11_173 at 62.673 kb on - strand, within Ac3H11_173 at 62.673 kb on - strand, within Ac3H11_173 at 62.673 kb on - strand, within Ac3H11_173 at 62.673 kb on - strand, within Ac3H11_173 at 62.673 kb on - strand, within Ac3H11_173 at 62.732 kb on + strand, within Ac3H11_173 at 62.733 kb on - strand, within Ac3H11_173 at 62.733 kb on - strand, within Ac3H11_173 at 62.733 kb on - strand, within Ac3H11_173 at 62.798 kb on + strand, within Ac3H11_173 at 62.819 kb on + strand, within Ac3H11_173 at 62.819 kb on + strand, within Ac3H11_173 at 62.820 kb on - strand, within Ac3H11_173 at 62.907 kb on - strand at 63.412 kb on - strand, within Ac3H11_174 at 63.678 kb on + strand, within Ac3H11_174 at 63.679 kb on - strand, within Ac3H11_174 at 63.679 kb on - strand, within Ac3H11_174 at 63.803 kb on + strand at 64.066 kb on + strand, within Ac3H11_175 at 64.066 kb on + strand, within Ac3H11_175 at 64.067 kb on - strand, within Ac3H11_175 at 64.067 kb on - strand, within Ac3H11_175 at 64.096 kb on + strand, within Ac3H11_175 at 64.096 kb on + strand, within Ac3H11_175 at 64.096 kb on + strand, within Ac3H11_175 at 64.097 kb on - strand, within Ac3H11_175 at 64.097 kb on - strand, within Ac3H11_175 at 64.102 kb on + strand, within Ac3H11_175 at 64.103 kb on - strand, within Ac3H11_175 at 64.672 kb on + strand at 64.672 kb on + strand at 64.672 kb on + strand at 64.672 kb on + strand at 64.672 kb on + strand at 64.672 kb on + strand at 64.673 kb on - strand at 64.788 kb on + strand at 64.788 kb on + strand at 64.789 kb on - strand at 64.789 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 45 mM remove 62,342 + Ac3H11_173 0.68 -0.2 62,342 + Ac3H11_173 0.68 -0.0 62,343 - Ac3H11_173 0.68 -0.2 62,343 - Ac3H11_173 0.68 -0.5 62,343 - Ac3H11_173 0.68 +1.7 62,343 - Ac3H11_173 0.68 -0.2 62,343 - Ac3H11_173 0.68 -0.4 62,343 - Ac3H11_173 0.68 -0.1 62,543 + Ac3H11_173 0.77 +0.5 62,543 + Ac3H11_173 0.77 -1.6 62,544 - Ac3H11_173 0.77 +0.3 62,544 - Ac3H11_173 0.77 -0.5 62,672 + Ac3H11_173 0.83 -0.2 62,672 + Ac3H11_173 0.83 -0.5 62,672 + Ac3H11_173 0.83 -0.6 62,672 + Ac3H11_173 0.83 +0.8 62,672 + Ac3H11_173 0.83 +0.4 62,672 + Ac3H11_173 0.83 -0.4 62,672 + Ac3H11_173 0.83 +0.1 62,672 + Ac3H11_173 0.83 -1.7 62,673 - Ac3H11_173 0.83 +0.4 62,673 - Ac3H11_173 0.83 -1.4 62,673 - Ac3H11_173 0.83 -0.0 62,673 - Ac3H11_173 0.83 -1.2 62,673 - Ac3H11_173 0.83 +0.4 62,673 - Ac3H11_173 0.83 -1.3 62,673 - Ac3H11_173 0.83 +0.1 62,673 - Ac3H11_173 0.83 +0.1 62,673 - Ac3H11_173 0.83 -0.6 62,732 + Ac3H11_173 0.86 +0.4 62,733 - Ac3H11_173 0.86 -0.3 62,733 - Ac3H11_173 0.86 -0.9 62,733 - Ac3H11_173 0.86 +0.7 62,798 + Ac3H11_173 0.89 +0.1 62,819 + Ac3H11_173 0.90 +0.7 62,819 + Ac3H11_173 0.90 +1.7 62,820 - Ac3H11_173 0.90 +0.4 62,907 - +0.3 63,412 - Ac3H11_174 0.42 +1.2 63,678 + Ac3H11_174 0.82 -0.0 63,679 - Ac3H11_174 0.82 +2.5 63,679 - Ac3H11_174 0.82 -0.4 63,803 + +0.4 64,066 + Ac3H11_175 0.24 +0.5 64,066 + Ac3H11_175 0.24 -0.8 64,067 - Ac3H11_175 0.24 +0.1 64,067 - Ac3H11_175 0.24 -0.0 64,096 + Ac3H11_175 0.27 +0.8 64,096 + Ac3H11_175 0.27 -0.3 64,096 + Ac3H11_175 0.27 -0.8 64,097 - Ac3H11_175 0.27 -0.1 64,097 - Ac3H11_175 0.27 -0.6 64,102 + Ac3H11_175 0.28 +0.5 64,103 - Ac3H11_175 0.28 +0.6 64,672 + -0.4 64,672 + -2.3 64,672 + +0.4 64,672 + +0.4 64,672 + -0.3 64,672 + +0.3 64,673 - -1.6 64,788 + +0.1 64,788 + -0.5 64,789 - +0.1 64,789 - -1.2
Or see this region's nucleotide sequence