Experiment: Spectinomycin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_24990 and AO353_24995 are separated by 6 nucleotides AO353_24995 and AO353_25000 are separated by 59 nucleotides AO353_25000 and AO353_25005 are separated by 818 nucleotides
AO353_24990: AO353_24990 - translation elongation factor, at 5,512,014 to 5,513,933
_24990
AO353_24995: AO353_24995 - tRNA-Sec, at 5,513,940 to 5,514,035
_24995
AO353_25000: AO353_25000 - magnesium transporter, at 5,514,095 to 5,515,108
_25000
AO353_25005: AO353_25005 - hypothetical protein, at 5,515,927 to 5,516,925
_25005
Position (kb) 5514
5515
5516 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5513.164 kb on + strand, within AO353_24990 at 5513.164 kb on + strand, within AO353_24990 at 5513.165 kb on - strand, within AO353_24990 at 5513.187 kb on - strand, within AO353_24990 at 5513.509 kb on + strand, within AO353_24990 at 5513.677 kb on + strand, within AO353_24990 at 5513.713 kb on - strand, within AO353_24990 at 5513.745 kb on - strand at 5513.745 kb on - strand at 5513.837 kb on - strand at 5513.837 kb on - strand at 5514.138 kb on + strand at 5514.138 kb on + strand at 5514.138 kb on + strand at 5514.138 kb on + strand at 5514.139 kb on - strand at 5514.139 kb on - strand at 5514.543 kb on - strand, within AO353_25000 at 5514.543 kb on - strand, within AO353_25000 at 5514.564 kb on + strand, within AO353_25000 at 5514.564 kb on + strand, within AO353_25000 at 5514.564 kb on + strand, within AO353_25000 at 5514.565 kb on - strand, within AO353_25000 at 5514.639 kb on + strand, within AO353_25000 at 5514.727 kb on - strand, within AO353_25000 at 5514.727 kb on - strand, within AO353_25000 at 5514.727 kb on - strand, within AO353_25000 at 5514.958 kb on + strand, within AO353_25000 at 5514.958 kb on + strand, within AO353_25000 at 5514.959 kb on - strand, within AO353_25000 at 5514.959 kb on - strand, within AO353_25000 at 5514.959 kb on - strand, within AO353_25000 at 5515.047 kb on + strand at 5515.047 kb on + strand at 5515.047 kb on + strand at 5515.047 kb on + strand at 5515.047 kb on + strand at 5515.047 kb on + strand at 5515.047 kb on + strand at 5515.048 kb on - strand at 5515.048 kb on - strand at 5515.048 kb on - strand at 5515.048 kb on - strand at 5515.048 kb on - strand at 5515.048 kb on - strand at 5515.048 kb on - strand at 5515.048 kb on - strand at 5515.055 kb on + strand at 5515.055 kb on + strand at 5515.055 kb on + strand at 5515.055 kb on + strand at 5515.055 kb on + strand at 5515.055 kb on + strand at 5515.055 kb on + strand at 5515.055 kb on + strand at 5515.056 kb on - strand at 5515.056 kb on - strand at 5515.056 kb on - strand at 5515.056 kb on - strand at 5515.056 kb on - strand at 5515.056 kb on - strand at 5515.056 kb on - strand at 5515.056 kb on - strand at 5515.056 kb on - strand at 5515.056 kb on - strand at 5515.056 kb on - strand at 5515.121 kb on + strand at 5515.121 kb on + strand at 5515.130 kb on + strand at 5515.131 kb on - strand at 5515.222 kb on + strand at 5515.222 kb on + strand at 5515.222 kb on + strand at 5515.222 kb on + strand at 5515.222 kb on + strand at 5515.223 kb on - strand at 5515.223 kb on - strand at 5515.229 kb on + strand at 5515.270 kb on + strand at 5515.271 kb on - strand at 5515.338 kb on - strand at 5515.338 kb on - strand at 5515.360 kb on + strand at 5515.371 kb on + strand at 5515.375 kb on + strand at 5515.433 kb on + strand at 5515.434 kb on - strand at 5515.434 kb on - strand at 5515.461 kb on + strand at 5515.469 kb on - strand at 5515.607 kb on + strand at 5515.641 kb on + strand at 5515.642 kb on - strand at 5515.645 kb on + strand at 5515.645 kb on + strand at 5515.646 kb on - strand at 5515.646 kb on - strand at 5515.647 kb on + strand at 5515.647 kb on + strand at 5515.648 kb on - strand at 5515.648 kb on - strand at 5515.648 kb on - strand at 5515.648 kb on - strand at 5515.649 kb on + strand at 5515.649 kb on + strand at 5515.649 kb on + strand at 5515.649 kb on + strand at 5515.650 kb on - strand at 5515.650 kb on - strand at 5515.667 kb on + strand at 5515.667 kb on + strand at 5515.714 kb on + strand at 5515.715 kb on - strand at 5515.717 kb on + strand at 5515.717 kb on + strand at 5515.717 kb on + strand at 5515.717 kb on + strand at 5515.788 kb on + strand at 5515.788 kb on + strand at 5515.788 kb on + strand at 5515.788 kb on + strand at 5515.788 kb on + strand at 5515.788 kb on + strand at 5515.788 kb on + strand at 5515.788 kb on + strand at 5515.788 kb on + strand at 5515.788 kb on + strand at 5515.788 kb on + strand at 5515.788 kb on + strand at 5515.788 kb on + strand at 5515.789 kb on - strand at 5515.789 kb on - strand at 5515.789 kb on - strand at 5515.789 kb on - strand at 5515.789 kb on - strand at 5515.789 kb on - strand at 5515.789 kb on - strand at 5515.789 kb on - strand at 5515.821 kb on + strand at 5515.821 kb on + strand at 5515.822 kb on - strand at 5515.822 kb on - strand at 5515.822 kb on - strand at 5515.822 kb on - strand at 5515.822 kb on - strand at 5515.822 kb on - strand at 5515.849 kb on + strand at 5515.849 kb on + strand at 5515.849 kb on + strand at 5515.850 kb on - strand at 5515.850 kb on - strand at 5515.972 kb on + strand at 5515.972 kb on + strand at 5515.972 kb on + strand at 5515.972 kb on + strand at 5515.972 kb on + strand at 5515.973 kb on - strand at 5515.973 kb on - strand at 5516.070 kb on + strand, within AO353_25005 at 5516.071 kb on - strand, within AO353_25005 at 5516.100 kb on + strand, within AO353_25005 at 5516.100 kb on + strand, within AO353_25005 at 5516.101 kb on - strand, within AO353_25005
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.2 mg/ml remove 5,513,164 + AO353_24990 0.60 -0.1 5,513,164 + AO353_24990 0.60 +0.6 5,513,165 - AO353_24990 0.60 -2.0 5,513,187 - AO353_24990 0.61 +0.6 5,513,509 + AO353_24990 0.78 +0.2 5,513,677 + AO353_24990 0.87 -1.3 5,513,713 - AO353_24990 0.88 +0.8 5,513,745 - -1.8 5,513,745 - -1.1 5,513,837 - +0.6 5,513,837 - -1.4 5,514,138 + -0.3 5,514,138 + -1.0 5,514,138 + -0.5 5,514,138 + -0.6 5,514,139 - -0.5 5,514,139 - +1.3 5,514,543 - AO353_25000 0.44 +1.2 5,514,543 - AO353_25000 0.44 +3.1 5,514,564 + AO353_25000 0.46 +1.2 5,514,564 + AO353_25000 0.46 -0.2 5,514,564 + AO353_25000 0.46 -0.3 5,514,565 - AO353_25000 0.46 +1.5 5,514,639 + AO353_25000 0.54 -0.9 5,514,727 - AO353_25000 0.62 +0.2 5,514,727 - AO353_25000 0.62 +2.5 5,514,727 - AO353_25000 0.62 -0.3 5,514,958 + AO353_25000 0.85 +0.8 5,514,958 + AO353_25000 0.85 -1.8 5,514,959 - AO353_25000 0.85 +1.5 5,514,959 - AO353_25000 0.85 +0.3 5,514,959 - AO353_25000 0.85 +1.5 5,515,047 + -0.9 5,515,047 + +1.9 5,515,047 + -1.0 5,515,047 + -1.8 5,515,047 + -0.6 5,515,047 + -1.4 5,515,047 + +3.0 5,515,048 - -0.4 5,515,048 - -0.1 5,515,048 - +0.2 5,515,048 - +0.8 5,515,048 - -0.1 5,515,048 - +0.3 5,515,048 - -0.3 5,515,048 - -0.5 5,515,055 + -0.1 5,515,055 + -0.3 5,515,055 + +0.0 5,515,055 + +0.6 5,515,055 + -0.4 5,515,055 + -0.1 5,515,055 + +0.2 5,515,055 + -0.9 5,515,056 - -1.1 5,515,056 - -0.1 5,515,056 - +0.0 5,515,056 - +2.2 5,515,056 - +0.5 5,515,056 - -0.1 5,515,056 - -1.8 5,515,056 - +0.5 5,515,056 - -0.7 5,515,056 - +0.4 5,515,056 - -0.0 5,515,121 + -0.2 5,515,121 + -0.4 5,515,130 + +1.4 5,515,131 - +0.6 5,515,222 + -0.3 5,515,222 + -1.0 5,515,222 + -0.8 5,515,222 + -1.0 5,515,222 + +2.0 5,515,223 - -1.0 5,515,223 - +0.8 5,515,229 + +0.3 5,515,270 + +0.3 5,515,271 - +0.5 5,515,338 - -0.3 5,515,338 - -1.2 5,515,360 + +0.3 5,515,371 + -0.1 5,515,375 + +0.6 5,515,433 + -0.5 5,515,434 - -1.4 5,515,434 - -2.1 5,515,461 + +0.7 5,515,469 - -0.9 5,515,607 + +0.1 5,515,641 + -1.1 5,515,642 - -1.5 5,515,645 + +0.2 5,515,645 + -0.6 5,515,646 - +0.3 5,515,646 - -0.3 5,515,647 + -0.4 5,515,647 + -1.3 5,515,648 - -0.8 5,515,648 - +1.4 5,515,648 - +0.7 5,515,648 - +1.6 5,515,649 + -0.8 5,515,649 + +1.5 5,515,649 + -2.1 5,515,649 + +0.0 5,515,650 - -0.2 5,515,650 - -0.5 5,515,667 + -0.6 5,515,667 + -0.4 5,515,714 + +1.0 5,515,715 - +0.6 5,515,717 + -0.7 5,515,717 + +1.2 5,515,717 + -0.2 5,515,717 + +1.3 5,515,788 + -0.1 5,515,788 + -0.9 5,515,788 + -1.1 5,515,788 + +1.1 5,515,788 + -0.4 5,515,788 + +0.9 5,515,788 + -0.8 5,515,788 + -2.0 5,515,788 + +0.5 5,515,788 + -1.1 5,515,788 + +1.6 5,515,788 + -0.3 5,515,788 + +0.9 5,515,789 - +1.9 5,515,789 - +1.4 5,515,789 - +0.2 5,515,789 - -0.0 5,515,789 - +0.2 5,515,789 - +0.5 5,515,789 - -1.3 5,515,789 - +1.0 5,515,821 + -1.3 5,515,821 + -2.0 5,515,822 - -0.4 5,515,822 - +0.2 5,515,822 - -1.3 5,515,822 - +0.5 5,515,822 - -0.3 5,515,822 - -0.6 5,515,849 + -2.8 5,515,849 + +0.2 5,515,849 + -0.7 5,515,850 - -0.3 5,515,850 - +1.2 5,515,972 + +0.2 5,515,972 + -0.8 5,515,972 + -1.2 5,515,972 + -0.6 5,515,972 + +0.8 5,515,973 - +0.5 5,515,973 - -0.9 5,516,070 + AO353_25005 0.14 -0.7 5,516,071 - AO353_25005 0.14 -1.4 5,516,100 + AO353_25005 0.17 +0.7 5,516,100 + AO353_25005 0.17 -0.8 5,516,101 - AO353_25005 0.17 -0.3
Or see this region's nucleotide sequence