Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_14925

Experiment: Spectinomycin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_14920 and AO353_14925 overlap by 4 nucleotidesAO353_14925 and AO353_14930 are separated by 106 nucleotidesAO353_14930 and AO353_14935 are separated by 178 nucleotides AO353_14920: AO353_14920 - D-amino acid oxidase, at 3,299,648 to 3,300,763 _14920 AO353_14925: AO353_14925 - hydroxyproline-2-epimerase, at 3,300,760 to 3,301,695 _14925 AO353_14930: AO353_14930 - GntR family transcriptional regulator, at 3,301,802 to 3,302,482 _14930 AO353_14935: AO353_14935 - aminopeptidase, at 3,302,661 to 3,302,948 _14935 Position (kb) 3300 3301 3302Strain fitness (log2 ratio) -2 -1 0 1 2at 3299.913 kb on + strand, within AO353_14920at 3299.913 kb on + strand, within AO353_14920at 3299.913 kb on + strand, within AO353_14920at 3299.913 kb on + strand, within AO353_14920at 3299.914 kb on - strand, within AO353_14920at 3300.075 kb on + strand, within AO353_14920at 3300.075 kb on + strand, within AO353_14920at 3300.075 kb on + strand, within AO353_14920at 3300.075 kb on + strand, within AO353_14920at 3300.076 kb on - strand, within AO353_14920at 3300.076 kb on - strand, within AO353_14920at 3300.076 kb on - strand, within AO353_14920at 3300.336 kb on + strand, within AO353_14920at 3300.336 kb on + strand, within AO353_14920at 3300.337 kb on - strand, within AO353_14920at 3300.337 kb on - strand, within AO353_14920at 3300.405 kb on + strand, within AO353_14920at 3300.406 kb on - strand, within AO353_14920at 3300.406 kb on - strand, within AO353_14920at 3300.406 kb on - strand, within AO353_14920at 3300.406 kb on - strand, within AO353_14920at 3300.406 kb on - strand, within AO353_14920at 3300.582 kb on + strand, within AO353_14920at 3300.583 kb on - strand, within AO353_14920at 3300.583 kb on - strand, within AO353_14920at 3300.583 kb on - strand, within AO353_14920at 3300.878 kb on + strand, within AO353_14925at 3300.879 kb on - strand, within AO353_14925at 3300.879 kb on - strand, within AO353_14925at 3300.879 kb on - strand, within AO353_14925at 3301.004 kb on + strand, within AO353_14925at 3301.005 kb on - strand, within AO353_14925at 3301.005 kb on - strand, within AO353_14925at 3301.143 kb on - strand, within AO353_14925at 3301.143 kb on - strand, within AO353_14925at 3301.394 kb on + strand, within AO353_14925at 3301.394 kb on + strand, within AO353_14925at 3301.395 kb on - strand, within AO353_14925at 3301.395 kb on - strand, within AO353_14925at 3301.395 kb on - strand, within AO353_14925at 3301.455 kb on + strand, within AO353_14925at 3301.546 kb on + strand, within AO353_14925at 3301.546 kb on + strand, within AO353_14925at 3301.546 kb on + strand, within AO353_14925at 3301.546 kb on + strand, within AO353_14925at 3301.546 kb on + strand, within AO353_14925at 3301.546 kb on + strand, within AO353_14925at 3301.547 kb on - strand, within AO353_14925at 3301.547 kb on - strand, within AO353_14925at 3301.686 kb on + strandat 3301.686 kb on + strandat 3301.686 kb on + strandat 3301.687 kb on - strandat 3301.687 kb on - strandat 3301.687 kb on - strandat 3301.687 kb on - strandat 3301.687 kb on - strandat 3301.727 kb on + strandat 3301.727 kb on + strandat 3301.727 kb on + strandat 3301.727 kb on + strandat 3301.727 kb on + strandat 3301.728 kb on - strandat 3301.728 kb on - strandat 3301.728 kb on - strandat 3301.768 kb on + strandat 3301.768 kb on + strandat 3301.769 kb on - strandat 3301.836 kb on + strandat 3301.836 kb on + strandat 3301.837 kb on - strandat 3301.837 kb on - strandat 3301.837 kb on - strandat 3301.983 kb on + strand, within AO353_14930at 3301.984 kb on - strand, within AO353_14930at 3301.984 kb on - strand, within AO353_14930at 3302.049 kb on + strand, within AO353_14930at 3302.049 kb on + strand, within AO353_14930at 3302.049 kb on + strand, within AO353_14930at 3302.049 kb on + strand, within AO353_14930at 3302.050 kb on - strand, within AO353_14930at 3302.515 kb on - strandat 3302.519 kb on + strandat 3302.519 kb on + strandat 3302.519 kb on + strandat 3302.519 kb on + strandat 3302.519 kb on + strandat 3302.519 kb on + strandat 3302.519 kb on + strandat 3302.519 kb on + strandat 3302.519 kb on + strandat 3302.520 kb on - strandat 3302.520 kb on - strandat 3302.520 kb on - strandat 3302.521 kb on + strandat 3302.666 kb on + strandat 3302.666 kb on + strandat 3302.666 kb on + strandat 3302.666 kb on + strandat 3302.666 kb on + strandat 3302.667 kb on - strandat 3302.672 kb on + strandat 3302.672 kb on + strandat 3302.672 kb on + strandat 3302.672 kb on + strandat 3302.672 kb on + strandat 3302.672 kb on + strandat 3302.672 kb on + strandat 3302.672 kb on + strandat 3302.673 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Spectinomycin 0.2 mg/ml
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3,299,913 + AO353_14920 0.24 -0.9
3,299,913 + AO353_14920 0.24 -0.9
3,299,913 + AO353_14920 0.24 -0.7
3,299,913 + AO353_14920 0.24 -1.1
3,299,914 - AO353_14920 0.24 -0.8
3,300,075 + AO353_14920 0.38 -1.8
3,300,075 + AO353_14920 0.38 -0.1
3,300,075 + AO353_14920 0.38 -0.1
3,300,075 + AO353_14920 0.38 +0.6
3,300,076 - AO353_14920 0.38 +0.3
3,300,076 - AO353_14920 0.38 +0.5
3,300,076 - AO353_14920 0.38 +1.2
3,300,336 + AO353_14920 0.62 +1.4
3,300,336 + AO353_14920 0.62 -1.6
3,300,337 - AO353_14920 0.62 +0.0
3,300,337 - AO353_14920 0.62 -1.3
3,300,405 + AO353_14920 0.68 +1.9
3,300,406 - AO353_14920 0.68 -0.7
3,300,406 - AO353_14920 0.68 -0.8
3,300,406 - AO353_14920 0.68 +0.5
3,300,406 - AO353_14920 0.68 +0.3
3,300,406 - AO353_14920 0.68 -1.1
3,300,582 + AO353_14920 0.84 +0.3
3,300,583 - AO353_14920 0.84 +0.2
3,300,583 - AO353_14920 0.84 -1.3
3,300,583 - AO353_14920 0.84 +0.8
3,300,878 + AO353_14925 0.13 -0.4
3,300,879 - AO353_14925 0.13 -0.3
3,300,879 - AO353_14925 0.13 +0.4
3,300,879 - AO353_14925 0.13 +1.3
3,301,004 + AO353_14925 0.26 +0.0
3,301,005 - AO353_14925 0.26 +0.9
3,301,005 - AO353_14925 0.26 -0.6
3,301,143 - AO353_14925 0.41 -0.7
3,301,143 - AO353_14925 0.41 +0.6
3,301,394 + AO353_14925 0.68 -1.7
3,301,394 + AO353_14925 0.68 +0.9
3,301,395 - AO353_14925 0.68 -1.6
3,301,395 - AO353_14925 0.68 -1.1
3,301,395 - AO353_14925 0.68 -1.6
3,301,455 + AO353_14925 0.74 +0.3
3,301,546 + AO353_14925 0.84 -2.7
3,301,546 + AO353_14925 0.84 -0.9
3,301,546 + AO353_14925 0.84 +0.0
3,301,546 + AO353_14925 0.84 -1.4
3,301,546 + AO353_14925 0.84 +0.1
3,301,546 + AO353_14925 0.84 -1.2
3,301,547 - AO353_14925 0.84 -0.2
3,301,547 - AO353_14925 0.84 -0.5
3,301,686 + -0.9
3,301,686 + -0.7
3,301,686 + +1.3
3,301,687 - -1.2
3,301,687 - -0.3
3,301,687 - -0.6
3,301,687 - +1.0
3,301,687 - -0.1
3,301,727 + +1.2
3,301,727 + -1.3
3,301,727 + +0.5
3,301,727 + -1.0
3,301,727 + -1.2
3,301,728 - -0.4
3,301,728 - +1.3
3,301,728 - +1.9
3,301,768 + +0.2
3,301,768 + +0.3
3,301,769 - -1.5
3,301,836 + -0.4
3,301,836 + -0.1
3,301,837 - -1.4
3,301,837 - +2.0
3,301,837 - -0.1
3,301,983 + AO353_14930 0.27 -1.1
3,301,984 - AO353_14930 0.27 +0.1
3,301,984 - AO353_14930 0.27 -1.3
3,302,049 + AO353_14930 0.36 +0.0
3,302,049 + AO353_14930 0.36 +0.3
3,302,049 + AO353_14930 0.36 +0.4
3,302,049 + AO353_14930 0.36 +0.6
3,302,050 - AO353_14930 0.36 -1.1
3,302,515 - +0.6
3,302,519 + +1.3
3,302,519 + +0.3
3,302,519 + -2.5
3,302,519 + -0.1
3,302,519 + -0.1
3,302,519 + +0.3
3,302,519 + +0.6
3,302,519 + -0.9
3,302,519 + +1.0
3,302,520 - -0.2
3,302,520 - +0.4
3,302,520 - +1.1
3,302,521 + +0.5
3,302,666 + -1.1
3,302,666 + -0.1
3,302,666 + -0.1
3,302,666 + +0.2
3,302,666 + +1.7
3,302,667 - +0.9
3,302,672 + +0.5
3,302,672 + -1.7
3,302,672 + -0.3
3,302,672 + -0.4
3,302,672 + -0.5
3,302,672 + -0.0
3,302,672 + -0.6
3,302,672 + -2.5
3,302,673 - +1.4

Or see this region's nucleotide sequence