Experiment: Spectinomycin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_09400 and AO353_09405 are separated by 17 nucleotides AO353_09405 and AO353_09410 are separated by 300 nucleotides
AO353_09400: AO353_09400 - hypothetical protein, at 2,064,531 to 2,065,730
_09400
AO353_09405: AO353_09405 - type VI secretion protein, at 2,065,748 to 2,065,888
_09405
AO353_09410: AO353_09410 - Fis family transcriptional regulator, at 2,066,189 to 2,067,706
_09410
Position (kb)
2065
2066 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2065.226 kb on - strand, within AO353_09400 at 2065.226 kb on - strand, within AO353_09400 at 2065.450 kb on + strand, within AO353_09400 at 2065.450 kb on + strand, within AO353_09400 at 2065.451 kb on - strand, within AO353_09400 at 2065.451 kb on - strand, within AO353_09400 at 2065.451 kb on - strand, within AO353_09400 at 2065.451 kb on - strand, within AO353_09400 at 2065.520 kb on + strand, within AO353_09400 at 2065.535 kb on + strand, within AO353_09400 at 2065.685 kb on + strand at 2065.791 kb on + strand, within AO353_09405 at 2065.791 kb on + strand, within AO353_09405 at 2065.812 kb on + strand, within AO353_09405 at 2065.812 kb on + strand, within AO353_09405 at 2065.813 kb on - strand, within AO353_09405 at 2065.813 kb on - strand, within AO353_09405 at 2065.813 kb on - strand, within AO353_09405 at 2065.841 kb on + strand, within AO353_09405 at 2065.841 kb on + strand, within AO353_09405 at 2065.841 kb on + strand, within AO353_09405 at 2065.841 kb on + strand, within AO353_09405 at 2065.841 kb on + strand, within AO353_09405 at 2065.841 kb on + strand, within AO353_09405 at 2065.842 kb on - strand, within AO353_09405 at 2065.842 kb on - strand, within AO353_09405 at 2065.842 kb on - strand, within AO353_09405 at 2066.071 kb on + strand at 2066.083 kb on + strand at 2066.083 kb on + strand at 2066.084 kb on - strand at 2066.487 kb on + strand, within AO353_09410 at 2066.487 kb on + strand, within AO353_09410 at 2066.487 kb on + strand, within AO353_09410 at 2066.487 kb on + strand, within AO353_09410 at 2066.488 kb on - strand, within AO353_09410 at 2066.488 kb on - strand, within AO353_09410 at 2066.488 kb on - strand, within AO353_09410 at 2066.488 kb on - strand, within AO353_09410 at 2066.488 kb on - strand, within AO353_09410 at 2066.646 kb on + strand, within AO353_09410 at 2066.646 kb on + strand, within AO353_09410 at 2066.647 kb on - strand, within AO353_09410 at 2066.647 kb on - strand, within AO353_09410 at 2066.647 kb on - strand, within AO353_09410 at 2066.647 kb on - strand, within AO353_09410 at 2066.647 kb on - strand, within AO353_09410 at 2066.647 kb on - strand, within AO353_09410 at 2066.647 kb on - strand, within AO353_09410 at 2066.783 kb on + strand, within AO353_09410 at 2066.783 kb on + strand, within AO353_09410 at 2066.784 kb on - strand, within AO353_09410 at 2066.784 kb on - strand, within AO353_09410 at 2066.784 kb on - strand, within AO353_09410 at 2066.784 kb on - strand, within AO353_09410 at 2066.784 kb on - strand, within AO353_09410 at 2066.784 kb on - strand, within AO353_09410
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.2 mg/ml remove 2,065,226 - AO353_09400 0.58 -0.6 2,065,226 - AO353_09400 0.58 +0.2 2,065,450 + AO353_09400 0.77 +1.5 2,065,450 + AO353_09400 0.77 +1.6 2,065,451 - AO353_09400 0.77 +1.2 2,065,451 - AO353_09400 0.77 -0.3 2,065,451 - AO353_09400 0.77 +0.2 2,065,451 - AO353_09400 0.77 -0.2 2,065,520 + AO353_09400 0.82 -0.8 2,065,535 + AO353_09400 0.84 -1.5 2,065,685 + +1.4 2,065,791 + AO353_09405 0.30 +0.2 2,065,791 + AO353_09405 0.30 +1.5 2,065,812 + AO353_09405 0.45 +0.4 2,065,812 + AO353_09405 0.45 -0.6 2,065,813 - AO353_09405 0.46 +0.6 2,065,813 - AO353_09405 0.46 +3.1 2,065,813 - AO353_09405 0.46 +1.6 2,065,841 + AO353_09405 0.66 -0.9 2,065,841 + AO353_09405 0.66 -0.7 2,065,841 + AO353_09405 0.66 -0.1 2,065,841 + AO353_09405 0.66 +1.1 2,065,841 + AO353_09405 0.66 +0.5 2,065,841 + AO353_09405 0.66 -0.6 2,065,842 - AO353_09405 0.67 +1.1 2,065,842 - AO353_09405 0.67 +1.6 2,065,842 - AO353_09405 0.67 +0.8 2,066,071 + -2.2 2,066,083 + +1.1 2,066,083 + +0.2 2,066,084 - +1.4 2,066,487 + AO353_09410 0.20 -1.0 2,066,487 + AO353_09410 0.20 +0.9 2,066,487 + AO353_09410 0.20 -1.2 2,066,487 + AO353_09410 0.20 -0.6 2,066,488 - AO353_09410 0.20 -1.6 2,066,488 - AO353_09410 0.20 +0.6 2,066,488 - AO353_09410 0.20 +0.6 2,066,488 - AO353_09410 0.20 +1.6 2,066,488 - AO353_09410 0.20 +2.0 2,066,646 + AO353_09410 0.30 +2.0 2,066,646 + AO353_09410 0.30 -0.9 2,066,647 - AO353_09410 0.30 +2.9 2,066,647 - AO353_09410 0.30 +2.0 2,066,647 - AO353_09410 0.30 +0.6 2,066,647 - AO353_09410 0.30 +0.6 2,066,647 - AO353_09410 0.30 +0.8 2,066,647 - AO353_09410 0.30 +1.6 2,066,647 - AO353_09410 0.30 -0.8 2,066,783 + AO353_09410 0.39 +0.2 2,066,783 + AO353_09410 0.39 +0.2 2,066,784 - AO353_09410 0.39 +0.3 2,066,784 - AO353_09410 0.39 +0.7 2,066,784 - AO353_09410 0.39 +0.2 2,066,784 - AO353_09410 0.39 +0.1 2,066,784 - AO353_09410 0.39 +0.9 2,066,784 - AO353_09410 0.39 +1.0
Or see this region's nucleotide sequence