Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_05715

Experiment: Spectinomycin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_05710 and AO353_05715 overlap by 1 nucleotidesAO353_05715 and AO353_05720 overlap by 4 nucleotides AO353_05710: AO353_05710 - (Fe-S)-binding protein, at 1,261,089 to 1,262,543 _05710 AO353_05715: AO353_05715 - lactate utilization protein B/C, at 1,262,543 to 1,263,214 _05715 AO353_05720: AO353_05720 - 4Fe-4S ferredoxin, at 1,263,211 to 1,266,021 _05720 Position (kb) 1262 1263 1264Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1261.565 kb on + strand, within AO353_05710at 1261.565 kb on + strand, within AO353_05710at 1261.565 kb on + strand, within AO353_05710at 1261.565 kb on + strand, within AO353_05710at 1261.565 kb on + strand, within AO353_05710at 1261.565 kb on + strand, within AO353_05710at 1261.565 kb on + strand, within AO353_05710at 1261.565 kb on + strand, within AO353_05710at 1261.565 kb on + strand, within AO353_05710at 1261.565 kb on + strand, within AO353_05710at 1261.565 kb on + strand, within AO353_05710at 1261.565 kb on + strand, within AO353_05710at 1261.565 kb on + strand, within AO353_05710at 1261.566 kb on - strand, within AO353_05710at 1261.566 kb on - strand, within AO353_05710at 1261.566 kb on - strand, within AO353_05710at 1261.566 kb on - strand, within AO353_05710at 1261.566 kb on - strand, within AO353_05710at 1261.566 kb on - strand, within AO353_05710at 1261.566 kb on - strand, within AO353_05710at 1261.566 kb on - strand, within AO353_05710at 1261.566 kb on - strand, within AO353_05710at 1261.566 kb on - strand, within AO353_05710at 1261.566 kb on - strand, within AO353_05710at 1261.566 kb on - strand, within AO353_05710at 1261.566 kb on - strand, within AO353_05710at 1261.568 kb on + strand, within AO353_05710at 1261.568 kb on + strand, within AO353_05710at 1261.568 kb on + strand, within AO353_05710at 1261.568 kb on + strand, within AO353_05710at 1261.568 kb on + strand, within AO353_05710at 1261.568 kb on + strand, within AO353_05710at 1261.568 kb on + strand, within AO353_05710at 1261.569 kb on - strand, within AO353_05710at 1261.569 kb on - strand, within AO353_05710at 1261.569 kb on - strand, within AO353_05710at 1261.569 kb on - strand, within AO353_05710at 1261.569 kb on - strand, within AO353_05710at 1261.569 kb on - strand, within AO353_05710at 1261.569 kb on - strand, within AO353_05710at 1261.635 kb on + strand, within AO353_05710at 1261.635 kb on + strand, within AO353_05710at 1261.635 kb on + strand, within AO353_05710at 1261.635 kb on + strand, within AO353_05710at 1261.635 kb on + strand, within AO353_05710at 1261.635 kb on + strand, within AO353_05710at 1261.635 kb on + strand, within AO353_05710at 1261.635 kb on + strand, within AO353_05710at 1261.635 kb on + strand, within AO353_05710at 1261.636 kb on - strand, within AO353_05710at 1261.636 kb on - strand, within AO353_05710at 1261.636 kb on - strand, within AO353_05710at 1261.636 kb on - strand, within AO353_05710at 1261.861 kb on + strand, within AO353_05710at 1261.861 kb on + strand, within AO353_05710at 1261.862 kb on - strand, within AO353_05710at 1261.862 kb on - strand, within AO353_05710at 1261.862 kb on - strand, within AO353_05710at 1261.914 kb on + strand, within AO353_05710at 1261.914 kb on + strand, within AO353_05710at 1261.914 kb on + strand, within AO353_05710at 1261.914 kb on + strand, within AO353_05710at 1261.914 kb on + strand, within AO353_05710at 1261.914 kb on + strand, within AO353_05710at 1261.914 kb on + strand, within AO353_05710at 1261.914 kb on + strand, within AO353_05710at 1261.915 kb on - strand, within AO353_05710at 1261.915 kb on - strand, within AO353_05710at 1261.915 kb on - strand, within AO353_05710at 1261.915 kb on - strand, within AO353_05710at 1261.915 kb on - strand, within AO353_05710at 1261.915 kb on - strand, within AO353_05710at 1261.915 kb on - strand, within AO353_05710at 1261.915 kb on - strand, within AO353_05710at 1261.915 kb on - strand, within AO353_05710at 1261.915 kb on - strand, within AO353_05710at 1262.082 kb on + strand, within AO353_05710at 1262.082 kb on + strand, within AO353_05710at 1262.083 kb on - strand, within AO353_05710at 1262.231 kb on - strand, within AO353_05710at 1262.328 kb on + strand, within AO353_05710at 1262.328 kb on + strand, within AO353_05710at 1262.328 kb on + strand, within AO353_05710at 1262.328 kb on + strand, within AO353_05710at 1262.329 kb on - strand, within AO353_05710at 1262.329 kb on - strand, within AO353_05710at 1262.596 kb on + strandat 1262.642 kb on + strand, within AO353_05715at 1262.642 kb on + strand, within AO353_05715at 1262.642 kb on + strand, within AO353_05715at 1262.642 kb on + strand, within AO353_05715at 1262.642 kb on + strand, within AO353_05715at 1262.642 kb on + strand, within AO353_05715at 1262.643 kb on - strand, within AO353_05715at 1262.643 kb on - strand, within AO353_05715at 1262.648 kb on + strand, within AO353_05715at 1262.648 kb on + strand, within AO353_05715at 1262.648 kb on + strand, within AO353_05715at 1262.648 kb on + strand, within AO353_05715at 1262.648 kb on + strand, within AO353_05715at 1262.648 kb on + strand, within AO353_05715at 1262.648 kb on + strand, within AO353_05715at 1262.648 kb on + strand, within AO353_05715at 1262.649 kb on - strand, within AO353_05715at 1262.649 kb on - strand, within AO353_05715at 1262.649 kb on - strand, within AO353_05715at 1262.649 kb on - strand, within AO353_05715at 1262.649 kb on - strand, within AO353_05715at 1262.649 kb on - strand, within AO353_05715at 1262.649 kb on - strand, within AO353_05715at 1262.649 kb on - strand, within AO353_05715at 1262.649 kb on - strand, within AO353_05715at 1262.649 kb on - strand, within AO353_05715at 1262.649 kb on - strand, within AO353_05715at 1262.649 kb on - strand, within AO353_05715at 1262.649 kb on - strand, within AO353_05715at 1262.709 kb on + strand, within AO353_05715at 1262.709 kb on + strand, within AO353_05715at 1262.709 kb on + strand, within AO353_05715at 1262.709 kb on + strand, within AO353_05715at 1262.709 kb on + strand, within AO353_05715at 1262.709 kb on + strand, within AO353_05715at 1262.710 kb on - strand, within AO353_05715at 1262.710 kb on - strand, within AO353_05715at 1262.710 kb on - strand, within AO353_05715at 1262.710 kb on - strand, within AO353_05715at 1262.710 kb on - strand, within AO353_05715at 1262.710 kb on - strand, within AO353_05715at 1262.710 kb on - strand, within AO353_05715at 1262.797 kb on + strand, within AO353_05715at 1262.797 kb on + strand, within AO353_05715at 1262.797 kb on + strand, within AO353_05715at 1262.798 kb on - strand, within AO353_05715at 1262.798 kb on - strand, within AO353_05715at 1262.864 kb on + strand, within AO353_05715at 1262.864 kb on + strand, within AO353_05715at 1262.864 kb on + strand, within AO353_05715at 1262.864 kb on + strand, within AO353_05715at 1262.864 kb on + strand, within AO353_05715at 1262.864 kb on + strand, within AO353_05715at 1262.865 kb on - strand, within AO353_05715at 1262.865 kb on - strand, within AO353_05715at 1262.865 kb on - strand, within AO353_05715at 1262.927 kb on - strand, within AO353_05715at 1263.060 kb on - strand, within AO353_05715at 1263.077 kb on + strand, within AO353_05715at 1263.077 kb on + strand, within AO353_05715at 1263.077 kb on + strand, within AO353_05715at 1263.078 kb on - strand, within AO353_05715at 1263.162 kb on - strandat 1263.219 kb on - strandat 1263.622 kb on - strand, within AO353_05720at 1263.681 kb on + strand, within AO353_05720at 1263.681 kb on + strand, within AO353_05720at 1263.682 kb on - strand, within AO353_05720at 1263.682 kb on - strand, within AO353_05720at 1263.682 kb on - strand, within AO353_05720at 1263.685 kb on + strand, within AO353_05720at 1263.685 kb on + strand, within AO353_05720at 1263.685 kb on + strand, within AO353_05720at 1263.685 kb on + strand, within AO353_05720at 1263.714 kb on - strand, within AO353_05720at 1263.862 kb on + strand, within AO353_05720at 1263.863 kb on - strand, within AO353_05720at 1263.863 kb on - strand, within AO353_05720at 1263.863 kb on - strand, within AO353_05720at 1263.863 kb on - strand, within AO353_05720at 1263.877 kb on - strand, within AO353_05720at 1263.927 kb on + strand, within AO353_05720at 1263.927 kb on + strand, within AO353_05720at 1263.928 kb on - strand, within AO353_05720at 1263.972 kb on + strand, within AO353_05720at 1263.973 kb on - strand, within AO353_05720at 1263.988 kb on + strand, within AO353_05720at 1263.988 kb on + strand, within AO353_05720at 1263.989 kb on - strand, within AO353_05720

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Per-strain Table

Position Strand Gene LocusTag Fraction Spectinomycin 0.2 mg/ml
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1,261,565 + AO353_05710 0.33 -1.0
1,261,565 + AO353_05710 0.33 -0.0
1,261,565 + AO353_05710 0.33 -0.2
1,261,565 + AO353_05710 0.33 -0.9
1,261,565 + AO353_05710 0.33 -0.2
1,261,565 + AO353_05710 0.33 +0.2
1,261,565 + AO353_05710 0.33 -0.1
1,261,565 + AO353_05710 0.33 +1.3
1,261,565 + AO353_05710 0.33 -1.2
1,261,565 + AO353_05710 0.33 -0.4
1,261,565 + AO353_05710 0.33 -2.1
1,261,565 + AO353_05710 0.33 +0.6
1,261,565 + AO353_05710 0.33 -0.7
1,261,566 - AO353_05710 0.33 +0.7
1,261,566 - AO353_05710 0.33 +0.8
1,261,566 - AO353_05710 0.33 -1.1
1,261,566 - AO353_05710 0.33 -1.1
1,261,566 - AO353_05710 0.33 -0.2
1,261,566 - AO353_05710 0.33 +1.1
1,261,566 - AO353_05710 0.33 -1.3
1,261,566 - AO353_05710 0.33 +1.1
1,261,566 - AO353_05710 0.33 -0.2
1,261,566 - AO353_05710 0.33 +0.8
1,261,566 - AO353_05710 0.33 -0.3
1,261,566 - AO353_05710 0.33 -1.6
1,261,566 - AO353_05710 0.33 +0.1
1,261,568 + AO353_05710 0.33 -1.9
1,261,568 + AO353_05710 0.33 +1.5
1,261,568 + AO353_05710 0.33 +0.4
1,261,568 + AO353_05710 0.33 +1.0
1,261,568 + AO353_05710 0.33 -1.2
1,261,568 + AO353_05710 0.33 +0.1
1,261,568 + AO353_05710 0.33 -1.7
1,261,569 - AO353_05710 0.33 -0.3
1,261,569 - AO353_05710 0.33 +0.2
1,261,569 - AO353_05710 0.33 +0.5
1,261,569 - AO353_05710 0.33 +1.2
1,261,569 - AO353_05710 0.33 -1.0
1,261,569 - AO353_05710 0.33 -1.0
1,261,569 - AO353_05710 0.33 -0.0
1,261,635 + AO353_05710 0.38 +0.7
1,261,635 + AO353_05710 0.38 +0.4
1,261,635 + AO353_05710 0.38 -1.9
1,261,635 + AO353_05710 0.38 +0.1
1,261,635 + AO353_05710 0.38 -2.7
1,261,635 + AO353_05710 0.38 -0.1
1,261,635 + AO353_05710 0.38 -0.4
1,261,635 + AO353_05710 0.38 -0.0
1,261,635 + AO353_05710 0.38 -1.1
1,261,636 - AO353_05710 0.38 +0.9
1,261,636 - AO353_05710 0.38 -0.3
1,261,636 - AO353_05710 0.38 -1.9
1,261,636 - AO353_05710 0.38 -1.6
1,261,861 + AO353_05710 0.53 +0.4
1,261,861 + AO353_05710 0.53 -1.2
1,261,862 - AO353_05710 0.53 +0.3
1,261,862 - AO353_05710 0.53 +0.2
1,261,862 - AO353_05710 0.53 +1.9
1,261,914 + AO353_05710 0.57 -1.1
1,261,914 + AO353_05710 0.57 -1.1
1,261,914 + AO353_05710 0.57 +0.6
1,261,914 + AO353_05710 0.57 +2.1
1,261,914 + AO353_05710 0.57 +0.4
1,261,914 + AO353_05710 0.57 -2.0
1,261,914 + AO353_05710 0.57 +1.7
1,261,914 + AO353_05710 0.57 +1.3
1,261,915 - AO353_05710 0.57 -2.0
1,261,915 - AO353_05710 0.57 -0.7
1,261,915 - AO353_05710 0.57 -1.3
1,261,915 - AO353_05710 0.57 +0.0
1,261,915 - AO353_05710 0.57 +0.5
1,261,915 - AO353_05710 0.57 -1.1
1,261,915 - AO353_05710 0.57 -2.3
1,261,915 - AO353_05710 0.57 -2.0
1,261,915 - AO353_05710 0.57 -0.6
1,261,915 - AO353_05710 0.57 -0.3
1,262,082 + AO353_05710 0.68 -1.4
1,262,082 + AO353_05710 0.68 +1.4
1,262,083 - AO353_05710 0.68 -0.0
1,262,231 - AO353_05710 0.78 +0.5
1,262,328 + AO353_05710 0.85 +0.9
1,262,328 + AO353_05710 0.85 -1.1
1,262,328 + AO353_05710 0.85 +0.1
1,262,328 + AO353_05710 0.85 -2.2
1,262,329 - AO353_05710 0.85 -0.1
1,262,329 - AO353_05710 0.85 -0.1
1,262,596 + -1.9
1,262,642 + AO353_05715 0.15 -1.7
1,262,642 + AO353_05715 0.15 +1.1
1,262,642 + AO353_05715 0.15 -0.7
1,262,642 + AO353_05715 0.15 -2.0
1,262,642 + AO353_05715 0.15 -1.1
1,262,642 + AO353_05715 0.15 +0.2
1,262,643 - AO353_05715 0.15 -1.7
1,262,643 - AO353_05715 0.15 +1.2
1,262,648 + AO353_05715 0.16 -0.4
1,262,648 + AO353_05715 0.16 -1.6
1,262,648 + AO353_05715 0.16 -0.8
1,262,648 + AO353_05715 0.16 -0.3
1,262,648 + AO353_05715 0.16 -0.8
1,262,648 + AO353_05715 0.16 +1.2
1,262,648 + AO353_05715 0.16 +2.5
1,262,648 + AO353_05715 0.16 -1.4
1,262,649 - AO353_05715 0.16 +1.5
1,262,649 - AO353_05715 0.16 +0.4
1,262,649 - AO353_05715 0.16 +0.3
1,262,649 - AO353_05715 0.16 -0.6
1,262,649 - AO353_05715 0.16 -0.3
1,262,649 - AO353_05715 0.16 +0.8
1,262,649 - AO353_05715 0.16 -1.4
1,262,649 - AO353_05715 0.16 -0.6
1,262,649 - AO353_05715 0.16 -0.9
1,262,649 - AO353_05715 0.16 -1.0
1,262,649 - AO353_05715 0.16 +1.5
1,262,649 - AO353_05715 0.16 -1.0
1,262,649 - AO353_05715 0.16 -1.6
1,262,709 + AO353_05715 0.25 -1.3
1,262,709 + AO353_05715 0.25 +2.0
1,262,709 + AO353_05715 0.25 +1.1
1,262,709 + AO353_05715 0.25 -1.5
1,262,709 + AO353_05715 0.25 +0.6
1,262,709 + AO353_05715 0.25 +1.0
1,262,710 - AO353_05715 0.25 -0.4
1,262,710 - AO353_05715 0.25 -1.1
1,262,710 - AO353_05715 0.25 +0.8
1,262,710 - AO353_05715 0.25 -0.7
1,262,710 - AO353_05715 0.25 +1.7
1,262,710 - AO353_05715 0.25 -0.2
1,262,710 - AO353_05715 0.25 +0.1
1,262,797 + AO353_05715 0.38 -1.1
1,262,797 + AO353_05715 0.38 -1.9
1,262,797 + AO353_05715 0.38 +1.4
1,262,798 - AO353_05715 0.38 +0.1
1,262,798 - AO353_05715 0.38 +1.9
1,262,864 + AO353_05715 0.48 -1.7
1,262,864 + AO353_05715 0.48 +1.3
1,262,864 + AO353_05715 0.48 +1.9
1,262,864 + AO353_05715 0.48 -0.9
1,262,864 + AO353_05715 0.48 +0.2
1,262,864 + AO353_05715 0.48 +0.1
1,262,865 - AO353_05715 0.48 -0.7
1,262,865 - AO353_05715 0.48 -1.6
1,262,865 - AO353_05715 0.48 -1.0
1,262,927 - AO353_05715 0.57 -1.8
1,263,060 - AO353_05715 0.77 -0.0
1,263,077 + AO353_05715 0.79 +0.5
1,263,077 + AO353_05715 0.79 -1.9
1,263,077 + AO353_05715 0.79 -0.8
1,263,078 - AO353_05715 0.80 -0.9
1,263,162 - +0.7
1,263,219 - +0.3
1,263,622 - AO353_05720 0.15 +1.4
1,263,681 + AO353_05720 0.17 -0.9
1,263,681 + AO353_05720 0.17 -0.1
1,263,682 - AO353_05720 0.17 -0.1
1,263,682 - AO353_05720 0.17 -0.2
1,263,682 - AO353_05720 0.17 +0.3
1,263,685 + AO353_05720 0.17 +0.0
1,263,685 + AO353_05720 0.17 -0.1
1,263,685 + AO353_05720 0.17 +1.0
1,263,685 + AO353_05720 0.17 -0.3
1,263,714 - AO353_05720 0.18 -1.1
1,263,862 + AO353_05720 0.23 +0.8
1,263,863 - AO353_05720 0.23 -0.4
1,263,863 - AO353_05720 0.23 +1.0
1,263,863 - AO353_05720 0.23 -1.1
1,263,863 - AO353_05720 0.23 -0.7
1,263,877 - AO353_05720 0.24 -0.7
1,263,927 + AO353_05720 0.25 +0.5
1,263,927 + AO353_05720 0.25 -0.9
1,263,928 - AO353_05720 0.26 +1.0
1,263,972 + AO353_05720 0.27 -0.7
1,263,973 - AO353_05720 0.27 +2.9
1,263,988 + AO353_05720 0.28 -0.4
1,263,988 + AO353_05720 0.28 +3.0
1,263,989 - AO353_05720 0.28 +0.6

Or see this region's nucleotide sequence