Experiment: Spectinomycin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03925 and AO353_03930 are separated by 174 nucleotides AO353_03930 and AO353_03935 are separated by 58 nucleotides AO353_03935 and AO353_03940 are separated by 565 nucleotides
AO353_03925: AO353_03925 - lysine transporter LysE, at 839,362 to 839,964
_03925
AO353_03930: AO353_03930 - superoxide dismutase, at 840,139 to 840,735
_03930
AO353_03935: AO353_03935 - fructose-bisphosphate aldolase, at 840,794 to 841,087
_03935
AO353_03940: AO353_03940 - hypothetical protein, at 841,653 to 842,597
_03940
Position (kb) 840
841
842 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 839.797 kb on + strand, within AO353_03925 at 839.797 kb on + strand, within AO353_03925 at 839.797 kb on + strand, within AO353_03925 at 839.797 kb on + strand, within AO353_03925 at 839.797 kb on + strand, within AO353_03925 at 839.798 kb on - strand, within AO353_03925 at 839.798 kb on - strand, within AO353_03925 at 839.798 kb on - strand, within AO353_03925 at 839.798 kb on - strand, within AO353_03925 at 839.798 kb on - strand, within AO353_03925 at 839.798 kb on - strand, within AO353_03925 at 839.798 kb on - strand, within AO353_03925 at 839.798 kb on - strand, within AO353_03925 at 839.801 kb on + strand, within AO353_03925 at 839.801 kb on + strand, within AO353_03925 at 839.801 kb on + strand, within AO353_03925 at 839.801 kb on + strand, within AO353_03925 at 839.801 kb on + strand, within AO353_03925 at 839.802 kb on - strand, within AO353_03925 at 839.802 kb on - strand, within AO353_03925 at 839.802 kb on - strand, within AO353_03925 at 839.966 kb on + strand at 839.966 kb on + strand at 839.970 kb on - strand at 839.970 kb on - strand at 839.970 kb on - strand at 839.970 kb on - strand at 839.970 kb on - strand at 839.990 kb on + strand at 839.990 kb on + strand at 839.991 kb on - strand at 839.991 kb on - strand at 840.015 kb on - strand at 840.033 kb on + strand at 840.033 kb on + strand at 840.033 kb on + strand at 840.033 kb on + strand at 840.034 kb on - strand at 840.034 kb on - strand at 840.034 kb on - strand at 840.061 kb on + strand at 840.733 kb on + strand at 840.733 kb on + strand at 840.733 kb on + strand at 840.733 kb on + strand at 840.734 kb on - strand at 840.734 kb on - strand at 840.734 kb on - strand at 840.778 kb on + strand at 840.909 kb on + strand, within AO353_03935 at 840.945 kb on + strand, within AO353_03935 at 840.945 kb on + strand, within AO353_03935 at 840.945 kb on + strand, within AO353_03935 at 840.945 kb on + strand, within AO353_03935 at 840.945 kb on + strand at 840.945 kb on + strand, within AO353_03935 at 840.946 kb on - strand, within AO353_03935 at 840.946 kb on - strand, within AO353_03935 at 840.946 kb on - strand, within AO353_03935 at 840.962 kb on - strand, within AO353_03935 at 841.029 kb on + strand, within AO353_03935 at 841.087 kb on + strand at 841.087 kb on + strand at 841.087 kb on + strand at 841.087 kb on + strand at 841.087 kb on + strand at 841.088 kb on - strand at 841.088 kb on - strand at 841.091 kb on + strand at 841.091 kb on + strand at 841.091 kb on + strand at 841.091 kb on + strand at 841.091 kb on + strand at 841.091 kb on + strand at 841.091 kb on + strand at 841.091 kb on + strand at 841.092 kb on - strand at 841.092 kb on - strand at 841.092 kb on - strand at 841.092 kb on - strand at 841.092 kb on - strand at 841.092 kb on - strand at 841.108 kb on + strand at 841.121 kb on - strand at 841.152 kb on + strand at 841.152 kb on + strand at 841.152 kb on + strand at 841.152 kb on + strand at 841.153 kb on - strand at 841.153 kb on - strand at 841.153 kb on - strand at 841.153 kb on - strand at 841.153 kb on - strand at 841.153 kb on - strand at 841.153 kb on - strand at 841.153 kb on - strand at 841.153 kb on - strand at 841.156 kb on + strand at 841.156 kb on + strand at 841.156 kb on + strand at 841.156 kb on + strand at 841.156 kb on + strand at 841.156 kb on + strand at 841.156 kb on + strand at 841.156 kb on + strand at 841.156 kb on + strand at 841.156 kb on + strand at 841.156 kb on + strand at 841.156 kb on + strand at 841.157 kb on - strand at 841.157 kb on - strand at 841.157 kb on - strand at 841.157 kb on - strand at 841.157 kb on - strand at 841.157 kb on - strand at 841.157 kb on - strand at 841.157 kb on - strand at 841.157 kb on - strand at 841.157 kb on - strand at 841.157 kb on - strand at 841.157 kb on - strand at 841.157 kb on - strand at 841.157 kb on - strand at 841.157 kb on - strand at 841.157 kb on - strand at 841.157 kb on - strand at 841.157 kb on - strand at 841.157 kb on - strand at 841.157 kb on - strand at 841.157 kb on - strand at 841.157 kb on - strand at 841.157 kb on - strand at 841.157 kb on - strand at 841.157 kb on - strand at 841.157 kb on - strand at 841.227 kb on + strand at 841.227 kb on + strand at 841.227 kb on + strand at 841.227 kb on + strand at 841.261 kb on + strand at 841.262 kb on - strand at 841.268 kb on + strand at 841.269 kb on - strand at 841.276 kb on + strand at 841.276 kb on + strand at 841.276 kb on + strand at 841.276 kb on + strand at 841.276 kb on + strand at 841.276 kb on + strand at 841.276 kb on + strand at 841.276 kb on + strand at 841.276 kb on + strand at 841.276 kb on + strand at 841.277 kb on - strand at 841.277 kb on - strand at 841.277 kb on - strand at 841.277 kb on - strand at 841.277 kb on - strand at 841.277 kb on - strand at 841.277 kb on - strand at 841.281 kb on + strand at 841.282 kb on - strand at 841.282 kb on - strand at 841.284 kb on + strand at 841.284 kb on + strand at 841.284 kb on + strand at 841.284 kb on + strand at 841.284 kb on + strand at 841.284 kb on + strand at 841.284 kb on + strand at 841.285 kb on - strand at 841.285 kb on - strand at 841.285 kb on - strand at 841.285 kb on - strand at 841.285 kb on - strand at 841.285 kb on - strand at 841.285 kb on - strand at 841.285 kb on - strand at 841.285 kb on - strand at 841.285 kb on - strand at 841.285 kb on - strand at 841.285 kb on - strand at 841.285 kb on - strand at 841.290 kb on + strand at 841.290 kb on + strand at 841.290 kb on + strand at 841.290 kb on + strand at 841.291 kb on - strand at 841.291 kb on - strand at 841.291 kb on - strand at 841.291 kb on - strand at 841.345 kb on + strand at 841.346 kb on - strand at 841.358 kb on + strand at 841.359 kb on - strand at 841.379 kb on - strand at 841.379 kb on - strand at 841.440 kb on + strand at 841.542 kb on + strand at 841.542 kb on + strand at 841.542 kb on + strand at 841.542 kb on + strand at 841.542 kb on + strand at 841.542 kb on + strand at 841.543 kb on - strand at 841.543 kb on - strand at 841.548 kb on + strand at 841.548 kb on + strand at 841.548 kb on + strand at 841.548 kb on + strand at 841.548 kb on + strand at 841.548 kb on + strand at 841.549 kb on - strand at 841.549 kb on - strand at 841.549 kb on - strand at 841.549 kb on - strand at 841.552 kb on - strand at 841.552 kb on - strand at 841.595 kb on - strand at 841.635 kb on + strand at 841.635 kb on + strand at 841.636 kb on - strand at 841.749 kb on + strand, within AO353_03940 at 841.828 kb on - strand, within AO353_03940 at 841.828 kb on - strand, within AO353_03940 at 841.828 kb on - strand, within AO353_03940 at 841.828 kb on - strand, within AO353_03940 at 841.828 kb on - strand, within AO353_03940 at 841.828 kb on - strand, within AO353_03940 at 841.828 kb on - strand, within AO353_03940 at 841.828 kb on - strand, within AO353_03940 at 841.828 kb on - strand, within AO353_03940 at 841.828 kb on - strand, within AO353_03940 at 841.828 kb on - strand, within AO353_03940 at 841.828 kb on - strand, within AO353_03940 at 841.828 kb on - strand, within AO353_03940 at 841.828 kb on - strand, within AO353_03940 at 841.834 kb on - strand, within AO353_03940 at 841.834 kb on - strand, within AO353_03940 at 842.012 kb on + strand, within AO353_03940 at 842.012 kb on + strand, within AO353_03940 at 842.012 kb on + strand, within AO353_03940 at 842.012 kb on + strand, within AO353_03940 at 842.012 kb on + strand, within AO353_03940 at 842.012 kb on + strand, within AO353_03940 at 842.012 kb on + strand, within AO353_03940 at 842.012 kb on + strand, within AO353_03940 at 842.012 kb on + strand, within AO353_03940 at 842.012 kb on + strand, within AO353_03940 at 842.078 kb on + strand, within AO353_03940 at 842.078 kb on + strand, within AO353_03940 at 842.078 kb on + strand, within AO353_03940 at 842.079 kb on - strand, within AO353_03940 at 842.079 kb on - strand, within AO353_03940 at 842.079 kb on - strand, within AO353_03940 at 842.079 kb on - strand, within AO353_03940 at 842.079 kb on - strand, within AO353_03940 at 842.079 kb on - strand, within AO353_03940 at 842.079 kb on - strand, within AO353_03940 at 842.079 kb on - strand, within AO353_03940 at 842.079 kb on - strand, within AO353_03940 at 842.079 kb on - strand, within AO353_03940
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.2 mg/ml remove 839,797 + AO353_03925 0.72 +0.1 839,797 + AO353_03925 0.72 +1.3 839,797 + AO353_03925 0.72 -0.2 839,797 + AO353_03925 0.72 +1.4 839,797 + AO353_03925 0.72 +0.2 839,798 - AO353_03925 0.72 +0.4 839,798 - AO353_03925 0.72 -2.4 839,798 - AO353_03925 0.72 +0.1 839,798 - AO353_03925 0.72 +0.2 839,798 - AO353_03925 0.72 +0.5 839,798 - AO353_03925 0.72 +1.0 839,798 - AO353_03925 0.72 +1.0 839,798 - AO353_03925 0.72 -1.7 839,801 + AO353_03925 0.73 -1.4 839,801 + AO353_03925 0.73 -0.0 839,801 + AO353_03925 0.73 +0.2 839,801 + AO353_03925 0.73 +0.5 839,801 + AO353_03925 0.73 +0.3 839,802 - AO353_03925 0.73 +0.5 839,802 - AO353_03925 0.73 -0.7 839,802 - AO353_03925 0.73 -1.6 839,966 + -1.0 839,966 + +0.8 839,970 - -0.8 839,970 - -0.6 839,970 - +0.5 839,970 - -1.8 839,970 - +0.3 839,990 + +0.5 839,990 + -2.7 839,991 - -0.4 839,991 - +1.1 840,015 - -0.1 840,033 + +0.4 840,033 + -0.1 840,033 + +0.1 840,033 + +0.1 840,034 - +1.0 840,034 - -0.2 840,034 - -1.4 840,061 + +0.5 840,733 + +0.2 840,733 + -0.0 840,733 + -0.2 840,733 + -1.9 840,734 - +0.2 840,734 - -1.1 840,734 - -0.1 840,778 + -0.6 840,909 + AO353_03935 0.39 -0.8 840,945 + AO353_03935 0.51 +3.5 840,945 + AO353_03935 0.51 -1.4 840,945 + AO353_03935 0.51 +0.6 840,945 + AO353_03935 0.51 -1.2 840,945 + -0.2 840,945 + AO353_03935 0.51 -0.6 840,946 - AO353_03935 0.52 +0.5 840,946 - AO353_03935 0.52 +1.5 840,946 - AO353_03935 0.52 +0.3 840,962 - AO353_03935 0.57 +0.4 841,029 + AO353_03935 0.80 +0.7 841,087 + +1.0 841,087 + +1.1 841,087 + +1.4 841,087 + +1.9 841,087 + +0.8 841,088 - +0.3 841,088 - +0.9 841,091 + -1.2 841,091 + -1.2 841,091 + +1.0 841,091 + +0.4 841,091 + +1.0 841,091 + -1.7 841,091 + +0.3 841,091 + +0.2 841,092 - +1.5 841,092 - -0.0 841,092 - -1.1 841,092 - +1.8 841,092 - -2.5 841,092 - +0.4 841,108 + +0.2 841,121 - -0.6 841,152 + -0.0 841,152 + -2.4 841,152 + +2.0 841,152 + +1.4 841,153 - -0.3 841,153 - -0.6 841,153 - +0.1 841,153 - -0.2 841,153 - +1.1 841,153 - +0.0 841,153 - -1.1 841,153 - -0.0 841,153 - +0.1 841,156 + +0.9 841,156 + -1.1 841,156 + +0.2 841,156 + -0.3 841,156 + -0.1 841,156 + +1.8 841,156 + +0.8 841,156 + -0.0 841,156 + +2.8 841,156 + +0.2 841,156 + -0.9 841,156 + -0.4 841,157 - -1.4 841,157 - -1.2 841,157 - -1.0 841,157 - +0.5 841,157 - -0.7 841,157 - -0.9 841,157 - -0.3 841,157 - +1.4 841,157 - -1.4 841,157 - -1.5 841,157 - -1.7 841,157 - +0.1 841,157 - -1.6 841,157 - -0.5 841,157 - +0.4 841,157 - -0.1 841,157 - +0.1 841,157 - +0.2 841,157 - +0.4 841,157 - -0.6 841,157 - -0.8 841,157 - +0.4 841,157 - -0.3 841,157 - +2.4 841,157 - -0.3 841,157 - -0.8 841,227 + -0.2 841,227 + -2.3 841,227 + +0.2 841,227 + -0.3 841,261 + -0.2 841,262 - +0.8 841,268 + -1.6 841,269 - +0.9 841,276 + +1.4 841,276 + -0.3 841,276 + -0.2 841,276 + +1.1 841,276 + -2.0 841,276 + +1.0 841,276 + +0.7 841,276 + -2.0 841,276 + +0.1 841,276 + -1.4 841,277 - -0.2 841,277 - +0.8 841,277 - +0.8 841,277 - +0.5 841,277 - +1.0 841,277 - -0.4 841,277 - +0.4 841,281 + +0.2 841,282 - +0.2 841,282 - -1.6 841,284 + -0.1 841,284 + -1.4 841,284 + +0.4 841,284 + +0.2 841,284 + -1.7 841,284 + -0.3 841,284 + +0.8 841,285 - -1.6 841,285 - +1.3 841,285 - -0.3 841,285 - -2.7 841,285 - -0.2 841,285 - +0.9 841,285 - -0.9 841,285 - +0.2 841,285 - +1.1 841,285 - -0.6 841,285 - -0.5 841,285 - -1.6 841,285 - +0.6 841,290 + +0.0 841,290 + +0.4 841,290 + -1.2 841,290 + -2.6 841,291 - +0.1 841,291 - -0.1 841,291 - -0.1 841,291 - -0.2 841,345 + -0.9 841,346 - +1.2 841,358 + -1.6 841,359 - -0.4 841,379 - +0.5 841,379 - -0.2 841,440 + -0.2 841,542 + +0.9 841,542 + -1.0 841,542 + -0.1 841,542 + -0.2 841,542 + +0.6 841,542 + -3.1 841,543 - +1.4 841,543 - -0.2 841,548 + -2.5 841,548 + +2.5 841,548 + -1.0 841,548 + -1.0 841,548 + -0.5 841,548 + -0.4 841,549 - -0.0 841,549 - +0.9 841,549 - +0.5 841,549 - +0.4 841,552 - -0.4 841,552 - +1.3 841,595 - +2.2 841,635 + +1.3 841,635 + +1.0 841,636 - +1.6 841,749 + AO353_03940 0.10 +1.3 841,828 - AO353_03940 0.19 +0.4 841,828 - AO353_03940 0.19 -0.1 841,828 - AO353_03940 0.19 +1.0 841,828 - AO353_03940 0.19 +0.5 841,828 - AO353_03940 0.19 +0.5 841,828 - AO353_03940 0.19 -2.4 841,828 - AO353_03940 0.19 -0.7 841,828 - AO353_03940 0.19 -1.4 841,828 - AO353_03940 0.19 +1.6 841,828 - AO353_03940 0.19 +1.1 841,828 - AO353_03940 0.19 -0.2 841,828 - AO353_03940 0.19 +0.5 841,828 - AO353_03940 0.19 -0.5 841,828 - AO353_03940 0.19 +0.1 841,834 - AO353_03940 0.19 -0.1 841,834 - AO353_03940 0.19 -1.7 842,012 + AO353_03940 0.38 +0.8 842,012 + AO353_03940 0.38 -1.0 842,012 + AO353_03940 0.38 -0.2 842,012 + AO353_03940 0.38 -1.0 842,012 + AO353_03940 0.38 +1.6 842,012 + AO353_03940 0.38 -0.7 842,012 + AO353_03940 0.38 +1.1 842,012 + AO353_03940 0.38 +0.7 842,012 + AO353_03940 0.38 +0.1 842,012 + AO353_03940 0.38 -1.9 842,078 + AO353_03940 0.45 +0.5 842,078 + AO353_03940 0.45 -0.6 842,078 + AO353_03940 0.45 +0.4 842,079 - AO353_03940 0.45 -1.9 842,079 - AO353_03940 0.45 -1.0 842,079 - AO353_03940 0.45 +1.1 842,079 - AO353_03940 0.45 +0.7 842,079 - AO353_03940 0.45 +0.6 842,079 - AO353_03940 0.45 +1.3 842,079 - AO353_03940 0.45 +1.2 842,079 - AO353_03940 0.45 +0.5 842,079 - AO353_03940 0.45 -1.2 842,079 - AO353_03940 0.45 -0.7
Or see this region's nucleotide sequence