Experiment: Spectinomycin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03820 and AO353_03825 are separated by 9 nucleotides AO353_03825 and AO353_03830 are separated by 9 nucleotides AO353_03830 and AO353_03835 are separated by 335 nucleotides
AO353_03820: AO353_03820 - Asp/Glu/hydantoin racemase, at 817,703 to 818,335
_03820
AO353_03825: AO353_03825 - hypothetical protein, at 818,345 to 818,608
_03825
AO353_03830: AO353_03830 - antibiotic biosynthesis monooxygenase, at 818,618 to 818,983
_03830
AO353_03835: AO353_03835 - AraC family transcriptional regulator, at 819,319 to 820,248
_03835
Position (kb) 818
819 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 817.664 kb on - strand at 817.664 kb on - strand at 817.681 kb on + strand at 817.681 kb on + strand at 817.681 kb on + strand at 817.681 kb on + strand at 817.681 kb on + strand at 817.682 kb on - strand at 817.682 kb on - strand at 817.682 kb on - strand at 817.682 kb on - strand at 817.682 kb on - strand at 817.682 kb on - strand at 817.682 kb on - strand at 817.714 kb on + strand at 817.715 kb on - strand at 817.715 kb on - strand at 817.715 kb on - strand at 817.715 kb on - strand at 817.715 kb on - strand at 817.722 kb on - strand at 817.722 kb on - strand at 817.722 kb on - strand at 817.722 kb on - strand at 817.724 kb on + strand at 817.724 kb on + strand at 817.725 kb on - strand at 817.725 kb on - strand at 817.725 kb on - strand at 817.725 kb on - strand at 817.725 kb on - strand at 817.842 kb on - strand, within AO353_03820 at 817.842 kb on - strand, within AO353_03820 at 817.865 kb on + strand, within AO353_03820 at 817.865 kb on + strand, within AO353_03820 at 817.865 kb on + strand, within AO353_03820 at 817.866 kb on - strand, within AO353_03820 at 817.866 kb on - strand, within AO353_03820 at 817.866 kb on - strand, within AO353_03820 at 817.904 kb on - strand, within AO353_03820 at 818.274 kb on - strand at 818.333 kb on + strand at 818.333 kb on + strand at 818.333 kb on + strand at 818.333 kb on + strand at 818.333 kb on + strand at 818.333 kb on + strand at 818.333 kb on + strand at 818.333 kb on + strand at 818.333 kb on + strand at 818.333 kb on + strand at 818.333 kb on + strand at 818.333 kb on + strand at 818.334 kb on - strand at 818.334 kb on - strand at 818.334 kb on - strand at 818.334 kb on - strand at 818.511 kb on + strand, within AO353_03825 at 818.512 kb on - strand, within AO353_03825 at 818.532 kb on - strand, within AO353_03825 at 818.566 kb on + strand, within AO353_03825 at 818.566 kb on + strand, within AO353_03825 at 818.566 kb on + strand, within AO353_03825 at 818.566 kb on + strand, within AO353_03825 at 818.567 kb on - strand, within AO353_03825 at 818.567 kb on - strand, within AO353_03825 at 818.611 kb on + strand at 818.611 kb on + strand at 818.612 kb on - strand at 818.612 kb on - strand at 818.636 kb on + strand at 818.636 kb on + strand at 818.636 kb on + strand at 818.637 kb on - strand at 818.735 kb on + strand, within AO353_03830 at 818.775 kb on + strand, within AO353_03830 at 818.776 kb on - strand, within AO353_03830 at 819.002 kb on + strand at 819.002 kb on + strand at 819.002 kb on + strand at 819.003 kb on - strand at 819.003 kb on - strand at 819.046 kb on + strand at 819.046 kb on + strand at 819.061 kb on - strand at 819.088 kb on + strand at 819.088 kb on + strand at 819.088 kb on + strand at 819.089 kb on - strand at 819.089 kb on - strand at 819.089 kb on - strand at 819.089 kb on - strand at 819.201 kb on + strand at 819.201 kb on + strand at 819.201 kb on + strand at 819.201 kb on + strand at 819.202 kb on - strand at 819.202 kb on - strand at 819.279 kb on - strand at 819.405 kb on + strand at 819.406 kb on - strand at 819.406 kb on - strand at 819.562 kb on + strand, within AO353_03835 at 819.562 kb on + strand, within AO353_03835 at 819.562 kb on + strand, within AO353_03835 at 819.562 kb on + strand, within AO353_03835 at 819.563 kb on - strand, within AO353_03835 at 819.563 kb on - strand, within AO353_03835 at 819.563 kb on - strand, within AO353_03835 at 819.577 kb on + strand, within AO353_03835 at 819.577 kb on + strand, within AO353_03835 at 819.577 kb on + strand, within AO353_03835 at 819.577 kb on + strand, within AO353_03835 at 819.578 kb on - strand, within AO353_03835 at 819.578 kb on - strand, within AO353_03835 at 819.578 kb on - strand, within AO353_03835 at 819.578 kb on - strand, within AO353_03835 at 819.636 kb on + strand, within AO353_03835 at 819.637 kb on - strand, within AO353_03835 at 819.745 kb on + strand, within AO353_03835 at 819.745 kb on + strand, within AO353_03835 at 819.745 kb on + strand, within AO353_03835 at 819.745 kb on + strand, within AO353_03835 at 819.746 kb on - strand, within AO353_03835 at 819.746 kb on - strand, within AO353_03835 at 819.746 kb on - strand, within AO353_03835 at 819.746 kb on - strand, within AO353_03835 at 819.746 kb on - strand, within AO353_03835 at 819.746 kb on - strand, within AO353_03835 at 819.746 kb on - strand, within AO353_03835 at 819.746 kb on - strand, within AO353_03835 at 819.895 kb on + strand, within AO353_03835 at 819.895 kb on + strand, within AO353_03835 at 819.895 kb on + strand, within AO353_03835 at 819.896 kb on - strand, within AO353_03835 at 819.896 kb on - strand, within AO353_03835 at 819.960 kb on + strand, within AO353_03835 at 819.964 kb on + strand, within AO353_03835 at 819.964 kb on + strand, within AO353_03835 at 819.964 kb on + strand, within AO353_03835 at 819.964 kb on + strand, within AO353_03835 at 819.964 kb on + strand, within AO353_03835 at 819.964 kb on + strand, within AO353_03835 at 819.964 kb on + strand at 819.964 kb on - strand, within AO353_03835 at 819.965 kb on - strand, within AO353_03835 at 819.965 kb on - strand, within AO353_03835 at 819.965 kb on - strand, within AO353_03835 at 819.965 kb on - strand, within AO353_03835 at 819.965 kb on - strand, within AO353_03835
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.2 mg/ml remove 817,664 - +1.5 817,664 - +0.3 817,681 + -2.1 817,681 + -0.1 817,681 + +0.7 817,681 + -0.6 817,681 + +0.5 817,682 - +0.3 817,682 - -1.3 817,682 - +0.7 817,682 - -0.6 817,682 - -1.7 817,682 - +1.1 817,682 - +3.3 817,714 + +0.3 817,715 - +0.7 817,715 - -1.7 817,715 - +0.2 817,715 - +0.2 817,715 - +0.5 817,722 - -1.6 817,722 - +1.3 817,722 - +0.3 817,722 - +1.3 817,724 + -0.1 817,724 + -0.8 817,725 - +0.5 817,725 - +0.0 817,725 - -1.2 817,725 - +0.3 817,725 - -0.8 817,842 - AO353_03820 0.22 -0.4 817,842 - AO353_03820 0.22 -1.7 817,865 + AO353_03820 0.26 +1.4 817,865 + AO353_03820 0.26 -2.4 817,865 + AO353_03820 0.26 -1.8 817,866 - AO353_03820 0.26 +0.3 817,866 - AO353_03820 0.26 -0.2 817,866 - AO353_03820 0.26 -1.6 817,904 - AO353_03820 0.32 +1.0 818,274 - +0.2 818,333 + -1.9 818,333 + -0.7 818,333 + +1.2 818,333 + -0.0 818,333 + +0.9 818,333 + -2.1 818,333 + -0.1 818,333 + -0.7 818,333 + -0.6 818,333 + -0.4 818,333 + +0.8 818,333 + -1.4 818,334 - -0.0 818,334 - -1.1 818,334 - +1.0 818,334 - -0.4 818,511 + AO353_03825 0.63 -0.3 818,512 - AO353_03825 0.63 -0.3 818,532 - AO353_03825 0.71 -0.9 818,566 + AO353_03825 0.84 +0.5 818,566 + AO353_03825 0.84 +0.4 818,566 + AO353_03825 0.84 -1.1 818,566 + AO353_03825 0.84 +0.4 818,567 - AO353_03825 0.84 +1.7 818,567 - AO353_03825 0.84 +0.9 818,611 + -0.4 818,611 + -0.3 818,612 - -0.1 818,612 - +0.4 818,636 + +1.3 818,636 + +0.2 818,636 + -0.6 818,637 - +0.4 818,735 + AO353_03830 0.32 -0.1 818,775 + AO353_03830 0.43 -1.3 818,776 - AO353_03830 0.43 -3.5 819,002 + -0.3 819,002 + +0.2 819,002 + -0.7 819,003 - +0.2 819,003 - +0.7 819,046 + -2.0 819,046 + -1.4 819,061 - -1.6 819,088 + +2.1 819,088 + -0.5 819,088 + -0.6 819,089 - +0.3 819,089 - -0.4 819,089 - -0.8 819,089 - -1.4 819,201 + +0.2 819,201 + -0.0 819,201 + +1.5 819,201 + +1.7 819,202 - -1.1 819,202 - +0.5 819,279 - -0.1 819,405 + +0.2 819,406 - -0.8 819,406 - -1.0 819,562 + AO353_03835 0.26 +1.7 819,562 + AO353_03835 0.26 -1.6 819,562 + AO353_03835 0.26 +0.8 819,562 + AO353_03835 0.26 -0.4 819,563 - AO353_03835 0.26 +0.9 819,563 - AO353_03835 0.26 -0.7 819,563 - AO353_03835 0.26 -1.6 819,577 + AO353_03835 0.28 -0.4 819,577 + AO353_03835 0.28 +0.7 819,577 + AO353_03835 0.28 -0.3 819,577 + AO353_03835 0.28 -0.2 819,578 - AO353_03835 0.28 +0.7 819,578 - AO353_03835 0.28 -0.1 819,578 - AO353_03835 0.28 -1.1 819,578 - AO353_03835 0.28 -0.1 819,636 + AO353_03835 0.34 -0.6 819,637 - AO353_03835 0.34 -1.8 819,745 + AO353_03835 0.46 -0.8 819,745 + AO353_03835 0.46 +1.0 819,745 + AO353_03835 0.46 +0.4 819,745 + AO353_03835 0.46 +1.7 819,746 - AO353_03835 0.46 -1.3 819,746 - AO353_03835 0.46 -1.0 819,746 - AO353_03835 0.46 +1.7 819,746 - AO353_03835 0.46 +0.1 819,746 - AO353_03835 0.46 +0.6 819,746 - AO353_03835 0.46 +1.0 819,746 - AO353_03835 0.46 -1.3 819,746 - AO353_03835 0.46 -0.5 819,895 + AO353_03835 0.62 +0.1 819,895 + AO353_03835 0.62 -0.5 819,895 + AO353_03835 0.62 -0.8 819,896 - AO353_03835 0.62 -1.1 819,896 - AO353_03835 0.62 -0.4 819,960 + AO353_03835 0.69 +0.0 819,964 + AO353_03835 0.69 +1.3 819,964 + AO353_03835 0.69 -2.0 819,964 + AO353_03835 0.69 -0.8 819,964 + AO353_03835 0.69 +1.9 819,964 + AO353_03835 0.69 -2.0 819,964 + AO353_03835 0.69 +0.9 819,964 + +0.9 819,964 - AO353_03835 0.69 +0.5 819,965 - AO353_03835 0.69 +0.7 819,965 - AO353_03835 0.69 -1.3 819,965 - AO353_03835 0.69 -0.3 819,965 - AO353_03835 0.69 -0.1 819,965 - AO353_03835 0.69 -0.3
Or see this region's nucleotide sequence