Experiment: Spectinomycin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02755 and AO353_02760 are separated by 116 nucleotides AO353_02760 and AO353_02765 overlap by 4 nucleotides AO353_02765 and AO353_02770 are separated by 1 nucleotides AO353_02770 and AO353_02775 are separated by 111 nucleotides
AO353_02755: AO353_02755 - peroxiredoxin, at 586,199 to 586,666
_02755
AO353_02760: AO353_02760 - arsenate reductase, at 586,783 to 587,136
_02760
AO353_02765: AO353_02765 - NAD(P)H-quinone oxidoreductase, at 587,133 to 587,729
_02765
AO353_02770: AO353_02770 - hypothetical protein, at 587,731 to 588,156
_02770
AO353_02775: AO353_02775 - 3-methyladenine DNA glycosylase, at 588,268 to 588,939
_02775
Position (kb) 587
588 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 586.299 kb on + strand, within AO353_02755 at 586.299 kb on + strand, within AO353_02755 at 586.299 kb on + strand, within AO353_02755 at 586.299 kb on + strand, within AO353_02755 at 586.299 kb on + strand, within AO353_02755 at 586.299 kb on + strand, within AO353_02755 at 586.299 kb on + strand, within AO353_02755 at 586.299 kb on + strand, within AO353_02755 at 586.299 kb on + strand, within AO353_02755 at 586.299 kb on + strand, within AO353_02755 at 586.299 kb on + strand, within AO353_02755 at 586.299 kb on + strand, within AO353_02755 at 586.299 kb on + strand, within AO353_02755 at 586.299 kb on + strand, within AO353_02755 at 586.299 kb on + strand, within AO353_02755 at 586.299 kb on + strand, within AO353_02755 at 586.300 kb on - strand, within AO353_02755 at 586.300 kb on - strand, within AO353_02755 at 586.300 kb on - strand, within AO353_02755 at 586.300 kb on - strand, within AO353_02755 at 586.300 kb on - strand, within AO353_02755 at 586.300 kb on - strand, within AO353_02755 at 586.300 kb on - strand, within AO353_02755 at 586.300 kb on - strand, within AO353_02755 at 586.300 kb on - strand, within AO353_02755 at 586.300 kb on - strand, within AO353_02755 at 586.300 kb on - strand, within AO353_02755 at 586.300 kb on - strand, within AO353_02755 at 586.300 kb on - strand, within AO353_02755 at 586.300 kb on - strand, within AO353_02755 at 586.300 kb on - strand, within AO353_02755 at 586.300 kb on - strand, within AO353_02755 at 586.300 kb on - strand, within AO353_02755 at 586.300 kb on - strand, within AO353_02755 at 586.300 kb on - strand, within AO353_02755 at 586.300 kb on - strand, within AO353_02755 at 586.300 kb on - strand, within AO353_02755 at 586.300 kb on - strand, within AO353_02755 at 586.300 kb on - strand, within AO353_02755 at 586.300 kb on - strand, within AO353_02755 at 586.510 kb on + strand, within AO353_02755 at 586.511 kb on - strand, within AO353_02755 at 586.511 kb on - strand, within AO353_02755 at 586.527 kb on + strand, within AO353_02755 at 586.527 kb on + strand, within AO353_02755 at 586.527 kb on + strand, within AO353_02755 at 586.527 kb on + strand, within AO353_02755 at 586.528 kb on - strand, within AO353_02755 at 586.531 kb on + strand, within AO353_02755 at 586.531 kb on + strand, within AO353_02755 at 586.531 kb on + strand, within AO353_02755 at 586.531 kb on + strand, within AO353_02755 at 586.531 kb on + strand, within AO353_02755 at 586.531 kb on + strand, within AO353_02755 at 586.532 kb on - strand, within AO353_02755 at 586.532 kb on - strand, within AO353_02755 at 586.532 kb on - strand, within AO353_02755 at 586.532 kb on - strand, within AO353_02755 at 586.532 kb on - strand, within AO353_02755 at 586.569 kb on - strand, within AO353_02755 at 586.596 kb on + strand, within AO353_02755 at 586.596 kb on + strand, within AO353_02755 at 586.597 kb on - strand, within AO353_02755 at 586.597 kb on - strand, within AO353_02755 at 586.678 kb on + strand at 586.678 kb on + strand at 586.745 kb on + strand at 586.745 kb on + strand at 586.745 kb on + strand at 586.745 kb on + strand at 586.745 kb on + strand at 586.745 kb on + strand at 586.745 kb on + strand at 586.746 kb on - strand at 586.746 kb on - strand at 586.746 kb on - strand at 586.746 kb on - strand at 586.746 kb on - strand at 586.762 kb on + strand at 586.762 kb on + strand at 586.762 kb on + strand at 586.763 kb on - strand at 586.802 kb on - strand at 587.138 kb on + strand at 587.139 kb on - strand at 587.139 kb on - strand at 587.139 kb on - strand at 587.145 kb on + strand at 587.146 kb on - strand at 587.146 kb on - strand at 587.146 kb on - strand at 587.160 kb on + strand at 587.160 kb on + strand at 587.160 kb on + strand at 587.160 kb on + strand at 587.161 kb on - strand at 587.161 kb on - strand at 587.161 kb on - strand at 587.161 kb on - strand at 587.163 kb on + strand at 587.163 kb on + strand at 587.164 kb on - strand at 587.164 kb on - strand at 587.164 kb on - strand at 587.164 kb on - strand at 587.314 kb on - strand, within AO353_02765 at 587.400 kb on + strand, within AO353_02765 at 587.400 kb on + strand, within AO353_02765 at 587.400 kb on + strand, within AO353_02765 at 587.401 kb on - strand, within AO353_02765 at 587.401 kb on - strand, within AO353_02765 at 587.401 kb on - strand, within AO353_02765 at 587.566 kb on - strand, within AO353_02765 at 587.815 kb on + strand, within AO353_02770 at 587.815 kb on + strand, within AO353_02770 at 587.815 kb on + strand, within AO353_02770 at 587.816 kb on - strand, within AO353_02770 at 587.816 kb on - strand, within AO353_02770 at 587.816 kb on - strand, within AO353_02770 at 587.816 kb on - strand, within AO353_02770 at 587.816 kb on - strand, within AO353_02770 at 587.816 kb on - strand, within AO353_02770 at 587.835 kb on - strand, within AO353_02770 at 587.835 kb on - strand, within AO353_02770 at 587.845 kb on + strand, within AO353_02770 at 587.845 kb on + strand, within AO353_02770 at 587.845 kb on + strand, within AO353_02770 at 587.845 kb on + strand, within AO353_02770 at 587.845 kb on + strand, within AO353_02770 at 587.846 kb on - strand, within AO353_02770 at 587.848 kb on + strand, within AO353_02770 at 587.848 kb on + strand, within AO353_02770 at 587.848 kb on + strand, within AO353_02770 at 587.848 kb on + strand, within AO353_02770 at 587.848 kb on + strand, within AO353_02770 at 587.848 kb on + strand, within AO353_02770 at 587.849 kb on - strand, within AO353_02770 at 587.849 kb on - strand, within AO353_02770 at 587.849 kb on - strand, within AO353_02770 at 587.849 kb on - strand, within AO353_02770 at 587.849 kb on - strand, within AO353_02770 at 587.989 kb on + strand, within AO353_02770 at 587.989 kb on + strand, within AO353_02770 at 587.989 kb on + strand, within AO353_02770 at 587.989 kb on + strand, within AO353_02770 at 587.989 kb on + strand, within AO353_02770 at 587.990 kb on - strand, within AO353_02770 at 587.990 kb on - strand, within AO353_02770 at 587.990 kb on - strand, within AO353_02770 at 588.092 kb on - strand, within AO353_02770 at 588.092 kb on - strand, within AO353_02770 at 588.092 kb on - strand, within AO353_02770 at 588.092 kb on - strand, within AO353_02770 at 588.092 kb on - strand, within AO353_02770 at 588.092 kb on - strand, within AO353_02770 at 588.092 kb on - strand, within AO353_02770 at 588.092 kb on - strand, within AO353_02770 at 588.092 kb on - strand, within AO353_02770 at 588.092 kb on - strand, within AO353_02770 at 588.092 kb on - strand, within AO353_02770 at 588.120 kb on + strand at 588.120 kb on + strand at 588.120 kb on + strand at 588.120 kb on + strand at 588.121 kb on - strand at 588.121 kb on - strand at 588.121 kb on - strand at 588.181 kb on + strand at 588.181 kb on + strand at 588.182 kb on - strand at 588.200 kb on + strand at 588.215 kb on + strand at 588.223 kb on - strand at 588.230 kb on + strand at 588.230 kb on + strand at 588.231 kb on - strand at 588.231 kb on - strand at 588.284 kb on + strand at 588.284 kb on + strand at 588.284 kb on + strand at 588.284 kb on + strand at 588.284 kb on + strand at 588.285 kb on - strand at 588.302 kb on - strand at 588.431 kb on + strand, within AO353_02775 at 588.431 kb on + strand, within AO353_02775 at 588.432 kb on - strand, within AO353_02775 at 588.432 kb on - strand, within AO353_02775 at 588.432 kb on - strand, within AO353_02775 at 588.432 kb on - strand, within AO353_02775 at 588.432 kb on - strand, within AO353_02775 at 588.432 kb on - strand, within AO353_02775 at 588.518 kb on + strand, within AO353_02775 at 588.518 kb on + strand, within AO353_02775 at 588.518 kb on + strand, within AO353_02775 at 588.518 kb on + strand, within AO353_02775 at 588.519 kb on - strand, within AO353_02775
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.2 mg/ml remove 586,299 + AO353_02755 0.21 -1.7 586,299 + AO353_02755 0.21 +1.2 586,299 + AO353_02755 0.21 -0.3 586,299 + AO353_02755 0.21 +0.6 586,299 + AO353_02755 0.21 +0.0 586,299 + AO353_02755 0.21 -0.6 586,299 + AO353_02755 0.21 -1.2 586,299 + AO353_02755 0.21 +1.9 586,299 + AO353_02755 0.21 -2.1 586,299 + AO353_02755 0.21 +0.1 586,299 + AO353_02755 0.21 +1.6 586,299 + AO353_02755 0.21 -0.1 586,299 + AO353_02755 0.21 -1.7 586,299 + AO353_02755 0.21 -0.2 586,299 + AO353_02755 0.21 -0.2 586,299 + AO353_02755 0.21 -1.3 586,300 - AO353_02755 0.22 +0.5 586,300 - AO353_02755 0.22 +0.0 586,300 - AO353_02755 0.22 +0.0 586,300 - AO353_02755 0.22 +0.4 586,300 - AO353_02755 0.22 +0.2 586,300 - AO353_02755 0.22 -0.7 586,300 - AO353_02755 0.22 +0.4 586,300 - AO353_02755 0.22 -1.0 586,300 - AO353_02755 0.22 -2.0 586,300 - AO353_02755 0.22 -0.1 586,300 - AO353_02755 0.22 +0.4 586,300 - AO353_02755 0.22 -0.7 586,300 - AO353_02755 0.22 -0.7 586,300 - AO353_02755 0.22 -0.9 586,300 - AO353_02755 0.22 -1.7 586,300 - AO353_02755 0.22 +0.0 586,300 - AO353_02755 0.22 +0.5 586,300 - AO353_02755 0.22 -1.7 586,300 - AO353_02755 0.22 +2.1 586,300 - AO353_02755 0.22 +1.2 586,300 - AO353_02755 0.22 -0.5 586,300 - AO353_02755 0.22 +0.6 586,300 - AO353_02755 0.22 +0.0 586,300 - AO353_02755 0.22 -0.7 586,510 + AO353_02755 0.66 -1.9 586,511 - AO353_02755 0.67 +0.5 586,511 - AO353_02755 0.67 -0.6 586,527 + AO353_02755 0.70 -0.3 586,527 + AO353_02755 0.70 -1.4 586,527 + AO353_02755 0.70 -1.9 586,527 + AO353_02755 0.70 -1.4 586,528 - AO353_02755 0.70 -0.3 586,531 + AO353_02755 0.71 -1.1 586,531 + AO353_02755 0.71 -0.8 586,531 + AO353_02755 0.71 +1.6 586,531 + AO353_02755 0.71 -1.3 586,531 + AO353_02755 0.71 -0.6 586,531 + AO353_02755 0.71 +0.7 586,532 - AO353_02755 0.71 +0.6 586,532 - AO353_02755 0.71 +1.3 586,532 - AO353_02755 0.71 +0.5 586,532 - AO353_02755 0.71 -1.2 586,532 - AO353_02755 0.71 -1.0 586,569 - AO353_02755 0.79 +1.2 586,596 + AO353_02755 0.85 -1.0 586,596 + AO353_02755 0.85 -0.2 586,597 - AO353_02755 0.85 +0.2 586,597 - AO353_02755 0.85 +0.0 586,678 + -1.6 586,678 + -0.9 586,745 + -1.2 586,745 + +0.2 586,745 + +1.6 586,745 + -1.0 586,745 + +0.5 586,745 + -2.6 586,745 + -0.6 586,746 - -0.4 586,746 - +0.7 586,746 - +0.9 586,746 - +0.3 586,746 - +0.6 586,762 + -0.7 586,762 + +1.3 586,762 + +0.0 586,763 - +0.3 586,802 - -0.3 587,138 + +0.3 587,139 - -0.6 587,139 - -1.8 587,139 - +0.9 587,145 + -0.5 587,146 - +1.2 587,146 - -1.6 587,146 - +0.0 587,160 + -3.3 587,160 + +0.4 587,160 + +0.2 587,160 + -2.3 587,161 - -2.6 587,161 - -0.2 587,161 - -1.4 587,161 - +0.0 587,163 + -0.5 587,163 + +0.0 587,164 - -0.7 587,164 - -2.6 587,164 - +0.0 587,164 - +1.6 587,314 - AO353_02765 0.30 -1.5 587,400 + AO353_02765 0.45 -2.1 587,400 + AO353_02765 0.45 -0.7 587,400 + AO353_02765 0.45 -3.7 587,401 - AO353_02765 0.45 +0.9 587,401 - AO353_02765 0.45 -0.4 587,401 - AO353_02765 0.45 -0.2 587,566 - AO353_02765 0.73 -0.7 587,815 + AO353_02770 0.20 -1.2 587,815 + AO353_02770 0.20 +0.0 587,815 + AO353_02770 0.20 +1.2 587,816 - AO353_02770 0.20 +1.3 587,816 - AO353_02770 0.20 -0.2 587,816 - AO353_02770 0.20 -0.6 587,816 - AO353_02770 0.20 +0.5 587,816 - AO353_02770 0.20 +0.1 587,816 - AO353_02770 0.20 +0.2 587,835 - AO353_02770 0.24 +0.8 587,835 - AO353_02770 0.24 -0.3 587,845 + AO353_02770 0.27 +0.9 587,845 + AO353_02770 0.27 -1.0 587,845 + AO353_02770 0.27 -2.7 587,845 + AO353_02770 0.27 -0.2 587,845 + AO353_02770 0.27 -1.7 587,846 - AO353_02770 0.27 -0.4 587,848 + AO353_02770 0.27 -1.7 587,848 + AO353_02770 0.27 +1.7 587,848 + AO353_02770 0.27 +2.6 587,848 + AO353_02770 0.27 -0.8 587,848 + AO353_02770 0.27 +0.7 587,848 + AO353_02770 0.27 -1.0 587,849 - AO353_02770 0.28 +0.7 587,849 - AO353_02770 0.28 -1.6 587,849 - AO353_02770 0.28 +1.2 587,849 - AO353_02770 0.28 -0.3 587,849 - AO353_02770 0.28 -0.1 587,989 + AO353_02770 0.61 -1.9 587,989 + AO353_02770 0.61 +0.2 587,989 + AO353_02770 0.61 +1.9 587,989 + AO353_02770 0.61 -1.2 587,989 + AO353_02770 0.61 +1.9 587,990 - AO353_02770 0.61 +1.2 587,990 - AO353_02770 0.61 -0.7 587,990 - AO353_02770 0.61 -0.4 588,092 - AO353_02770 0.85 +1.8 588,092 - AO353_02770 0.85 -0.6 588,092 - AO353_02770 0.85 +0.8 588,092 - AO353_02770 0.85 +1.0 588,092 - AO353_02770 0.85 +0.1 588,092 - AO353_02770 0.85 -1.1 588,092 - AO353_02770 0.85 -1.2 588,092 - AO353_02770 0.85 +0.4 588,092 - AO353_02770 0.85 -1.7 588,092 - AO353_02770 0.85 -0.8 588,092 - AO353_02770 0.85 -0.4 588,120 + +3.1 588,120 + -0.9 588,120 + +0.0 588,120 + -0.9 588,121 - -3.2 588,121 - +0.3 588,121 - +0.4 588,181 + -0.9 588,181 + +0.3 588,182 - -1.7 588,200 + +2.2 588,215 + -0.3 588,223 - +0.4 588,230 + -2.1 588,230 + +0.4 588,231 - -0.6 588,231 - -2.4 588,284 + +0.0 588,284 + +2.4 588,284 + -1.9 588,284 + -1.2 588,284 + +0.0 588,285 - -0.3 588,302 - +0.7 588,431 + AO353_02775 0.24 +0.0 588,431 + AO353_02775 0.24 -0.2 588,432 - AO353_02775 0.24 +2.6 588,432 - AO353_02775 0.24 -1.6 588,432 - AO353_02775 0.24 +0.5 588,432 - AO353_02775 0.24 -1.0 588,432 - AO353_02775 0.24 -1.9 588,432 - AO353_02775 0.24 -0.6 588,518 + AO353_02775 0.37 +0.1 588,518 + AO353_02775 0.37 -2.3 588,518 + AO353_02775 0.37 -0.4 588,518 + AO353_02775 0.37 -1.1 588,519 - AO353_02775 0.37 +0.6
Or see this region's nucleotide sequence