Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02685

Experiment: Spectinomycin 0.2 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_02680 and AO353_02685 are separated by 11 nucleotidesAO353_02685 and AO353_02690 are separated by 8 nucleotidesAO353_02690 and AO353_02695 are separated by 267 nucleotides AO353_02680: AO353_02680 - phosphoribosylaminoimidazole synthetase, at 570,072 to 571,130 _02680 AO353_02685: AO353_02685 - phosphoribosylglycinamide formyltransferase, at 571,142 to 571,792 _02685 AO353_02690: AO353_02690 - dehydrogenase, at 571,801 to 572,514 _02690 AO353_02695: AO353_02695 - hypothetical protein, at 572,782 to 572,970 _02695 Position (kb) 571 572Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 571.496 kb on + strand, within AO353_02685at 571.497 kb on - strand, within AO353_02685at 571.497 kb on - strand, within AO353_02685at 571.497 kb on - strand, within AO353_02685at 571.497 kb on - strand, within AO353_02685at 571.497 kb on - strand, within AO353_02685at 571.507 kb on - strand, within AO353_02685at 571.611 kb on + strand, within AO353_02685at 571.612 kb on - strand, within AO353_02685at 571.615 kb on - strand, within AO353_02685at 571.683 kb on - strand, within AO353_02685at 571.759 kb on - strandat 571.790 kb on + strandat 571.790 kb on + strandat 571.790 kb on + strandat 571.790 kb on + strandat 571.791 kb on - strandat 571.791 kb on - strandat 571.800 kb on + strandat 571.800 kb on + strandat 571.800 kb on + strandat 571.801 kb on - strandat 571.801 kb on - strandat 571.801 kb on - strandat 571.885 kb on + strand, within AO353_02690at 571.885 kb on + strand, within AO353_02690at 571.885 kb on + strand, within AO353_02690at 571.885 kb on + strand, within AO353_02690at 571.885 kb on + strand, within AO353_02690at 571.885 kb on + strand, within AO353_02690at 571.886 kb on - strand, within AO353_02690at 572.053 kb on + strand, within AO353_02690at 572.160 kb on - strand, within AO353_02690at 572.194 kb on + strand, within AO353_02690at 572.194 kb on + strand, within AO353_02690at 572.194 kb on + strand, within AO353_02690at 572.194 kb on + strand, within AO353_02690at 572.195 kb on - strand, within AO353_02690at 572.195 kb on - strand, within AO353_02690at 572.195 kb on - strand, within AO353_02690at 572.195 kb on - strand, within AO353_02690at 572.195 kb on - strand, within AO353_02690at 572.219 kb on + strand, within AO353_02690at 572.220 kb on - strand, within AO353_02690at 572.220 kb on - strand, within AO353_02690at 572.220 kb on - strand, within AO353_02690at 572.245 kb on + strand, within AO353_02690at 572.245 kb on + strand, within AO353_02690at 572.245 kb on + strand, within AO353_02690at 572.246 kb on - strand, within AO353_02690at 572.278 kb on + strand, within AO353_02690at 572.278 kb on + strand, within AO353_02690at 572.278 kb on + strand, within AO353_02690at 572.278 kb on + strand, within AO353_02690at 572.278 kb on + strand, within AO353_02690at 572.278 kb on + strand, within AO353_02690at 572.278 kb on + strand, within AO353_02690at 572.279 kb on - strand, within AO353_02690at 572.279 kb on - strand, within AO353_02690at 572.279 kb on - strand, within AO353_02690at 572.279 kb on - strand, within AO353_02690at 572.279 kb on - strand, within AO353_02690at 572.279 kb on - strand, within AO353_02690at 572.413 kb on + strand, within AO353_02690at 572.413 kb on + strand, within AO353_02690at 572.413 kb on + strand, within AO353_02690at 572.414 kb on - strand, within AO353_02690at 572.414 kb on - strand, within AO353_02690at 572.414 kb on - strand, within AO353_02690at 572.414 kb on - strand, within AO353_02690at 572.414 kb on - strand, within AO353_02690at 572.414 kb on - strand, within AO353_02690at 572.414 kb on - strand, within AO353_02690at 572.458 kb on + strandat 572.458 kb on + strandat 572.458 kb on + strandat 572.458 kb on + strandat 572.458 kb on + strandat 572.458 kb on + strandat 572.459 kb on - strandat 572.459 kb on - strandat 572.459 kb on - strandat 572.459 kb on - strandat 572.459 kb on - strandat 572.512 kb on + strandat 572.512 kb on + strandat 572.512 kb on + strandat 572.513 kb on - strandat 572.513 kb on - strandat 572.513 kb on - strandat 572.513 kb on - strandat 572.513 kb on - strandat 572.704 kb on + strandat 572.704 kb on + strandat 572.726 kb on + strandat 572.726 kb on + strandat 572.726 kb on + strandat 572.727 kb on - strandat 572.728 kb on + strandat 572.728 kb on + strandat 572.728 kb on + strandat 572.729 kb on - strandat 572.729 kb on - strandat 572.729 kb on - strandat 572.729 kb on - strandat 572.729 kb on - strandat 572.729 kb on - strandat 572.729 kb on - strandat 572.729 kb on - strandat 572.729 kb on - strandat 572.789 kb on + strandat 572.789 kb on + strandat 572.789 kb on + strandat 572.789 kb on + strandat 572.789 kb on + strandat 572.789 kb on + strandat 572.790 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Spectinomycin 0.2 mg/ml
remove
571,496 + AO353_02685 0.54 +0.8
571,497 - AO353_02685 0.55 -1.4
571,497 - AO353_02685 0.55 -1.2
571,497 - AO353_02685 0.55 -0.3
571,497 - AO353_02685 0.55 -1.9
571,497 - AO353_02685 0.55 -0.7
571,507 - AO353_02685 0.56 -2.0
571,611 + AO353_02685 0.72 -0.6
571,612 - AO353_02685 0.72 -1.4
571,615 - AO353_02685 0.73 -0.9
571,683 - AO353_02685 0.83 -1.4
571,759 - +0.8
571,790 + +0.5
571,790 + -0.5
571,790 + +0.3
571,790 + +0.3
571,791 - +0.1
571,791 - +0.6
571,800 + -1.1
571,800 + +0.1
571,800 + +0.9
571,801 - +1.0
571,801 - -1.2
571,801 - -0.9
571,885 + AO353_02690 0.12 -1.1
571,885 + AO353_02690 0.12 -0.5
571,885 + AO353_02690 0.12 -0.9
571,885 + AO353_02690 0.12 -1.4
571,885 + AO353_02690 0.12 +0.9
571,885 + AO353_02690 0.12 -0.0
571,886 - AO353_02690 0.12 -1.2
572,053 + AO353_02690 0.35 -1.4
572,160 - AO353_02690 0.50 -2.1
572,194 + AO353_02690 0.55 -2.6
572,194 + AO353_02690 0.55 -0.9
572,194 + AO353_02690 0.55 -0.0
572,194 + AO353_02690 0.55 -0.4
572,195 - AO353_02690 0.55 +0.4
572,195 - AO353_02690 0.55 +1.6
572,195 - AO353_02690 0.55 -0.1
572,195 - AO353_02690 0.55 -0.2
572,195 - AO353_02690 0.55 -0.4
572,219 + AO353_02690 0.59 -0.2
572,220 - AO353_02690 0.59 +1.4
572,220 - AO353_02690 0.59 -0.2
572,220 - AO353_02690 0.59 +0.3
572,245 + AO353_02690 0.62 -0.5
572,245 + AO353_02690 0.62 -2.8
572,245 + AO353_02690 0.62 -0.0
572,246 - AO353_02690 0.62 +1.1
572,278 + AO353_02690 0.67 -0.0
572,278 + AO353_02690 0.67 -0.7
572,278 + AO353_02690 0.67 -0.9
572,278 + AO353_02690 0.67 +0.2
572,278 + AO353_02690 0.67 -0.0
572,278 + AO353_02690 0.67 -1.3
572,278 + AO353_02690 0.67 -1.6
572,279 - AO353_02690 0.67 -1.8
572,279 - AO353_02690 0.67 +0.7
572,279 - AO353_02690 0.67 -0.7
572,279 - AO353_02690 0.67 +1.6
572,279 - AO353_02690 0.67 -0.4
572,279 - AO353_02690 0.67 +2.2
572,413 + AO353_02690 0.86 -0.0
572,413 + AO353_02690 0.86 +0.2
572,413 + AO353_02690 0.86 -1.6
572,414 - AO353_02690 0.86 +0.3
572,414 - AO353_02690 0.86 +1.9
572,414 - AO353_02690 0.86 -0.2
572,414 - AO353_02690 0.86 -0.7
572,414 - AO353_02690 0.86 +0.5
572,414 - AO353_02690 0.86 -1.4
572,414 - AO353_02690 0.86 -0.1
572,458 + -1.4
572,458 + -1.3
572,458 + -0.5
572,458 + -2.2
572,458 + -2.6
572,458 + -0.0
572,459 - +0.8
572,459 - -1.0
572,459 - -0.3
572,459 - -2.1
572,459 - -1.1
572,512 + +0.5
572,512 + -1.7
572,512 + -0.4
572,513 - +0.7
572,513 - -0.1
572,513 - -0.7
572,513 - -1.0
572,513 - +2.0
572,704 + +0.0
572,704 + +0.4
572,726 + +0.1
572,726 + +1.8
572,726 + +1.6
572,727 - -0.6
572,728 + -0.1
572,728 + +0.1
572,728 + -1.8
572,729 - +0.8
572,729 - -0.2
572,729 - +0.8
572,729 - +0.5
572,729 - +0.9
572,729 - -1.8
572,729 - -0.2
572,729 - -1.2
572,729 - +0.8
572,789 + -1.6
572,789 + +0.4
572,789 + -0.2
572,789 + -0.0
572,789 + -0.2
572,789 + +0.3
572,790 - -1.2

Or see this region's nucleotide sequence