Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_01725

Experiment: Spectinomycin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_01720 and AO353_01725 are separated by 264 nucleotidesAO353_01725 and AO353_01730 overlap by 4 nucleotidesAO353_01730 and AO353_01735 are separated by 31 nucleotides AO353_01720: AO353_01720 - AMP-binding protein, at 360,390 to 362,057 _01720 AO353_01725: AO353_01725 - phosphohistidine phosphatase, at 362,322 to 362,771 _01725 AO353_01730: AO353_01730 - lipase, at 362,768 to 363,115 _01730 AO353_01735: AO353_01735 - glycerol-3-phosphate dehydrogenase, at 363,147 to 364,172 _01735 Position (kb) 362 363Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 361.366 kb on + strand, within AO353_01720at 361.366 kb on + strand, within AO353_01720at 361.366 kb on + strand, within AO353_01720at 361.366 kb on + strand, within AO353_01720at 361.366 kb on + strand, within AO353_01720at 361.366 kb on + strand, within AO353_01720at 361.366 kb on + strand, within AO353_01720at 361.366 kb on + strand, within AO353_01720at 361.366 kb on + strand, within AO353_01720at 361.366 kb on + strand, within AO353_01720at 361.366 kb on + strand, within AO353_01720at 361.367 kb on - strand, within AO353_01720at 361.367 kb on - strand, within AO353_01720at 361.367 kb on - strand, within AO353_01720at 361.367 kb on - strand, within AO353_01720at 361.367 kb on - strand, within AO353_01720at 361.367 kb on - strand, within AO353_01720at 361.367 kb on - strand, within AO353_01720at 361.420 kb on + strand, within AO353_01720at 361.420 kb on + strand, within AO353_01720at 361.421 kb on - strand, within AO353_01720at 361.540 kb on + strand, within AO353_01720at 361.540 kb on + strand, within AO353_01720at 361.540 kb on + strand, within AO353_01720at 361.540 kb on + strand, within AO353_01720at 361.540 kb on + strand, within AO353_01720at 361.540 kb on + strand, within AO353_01720at 361.540 kb on + strand, within AO353_01720at 361.540 kb on + strand, within AO353_01720at 361.540 kb on + strandat 361.540 kb on + strand, within AO353_01720at 361.540 kb on + strand, within AO353_01720at 361.540 kb on + strand, within AO353_01720at 361.540 kb on + strand, within AO353_01720at 361.541 kb on - strand, within AO353_01720at 361.541 kb on - strand, within AO353_01720at 361.541 kb on - strand, within AO353_01720at 361.541 kb on - strand, within AO353_01720at 361.541 kb on - strand, within AO353_01720at 361.783 kb on + strand, within AO353_01720at 361.783 kb on + strand, within AO353_01720at 361.821 kb on + strand, within AO353_01720at 361.821 kb on + strand, within AO353_01720at 361.822 kb on - strand, within AO353_01720at 361.980 kb on + strandat 362.020 kb on + strandat 362.020 kb on + strandat 362.020 kb on + strandat 362.020 kb on + strandat 362.021 kb on - strandat 362.095 kb on + strandat 362.095 kb on + strandat 362.095 kb on + strandat 362.095 kb on + strandat 362.096 kb on - strandat 362.096 kb on - strandat 362.096 kb on - strandat 362.096 kb on - strandat 362.096 kb on - strandat 362.124 kb on + strandat 362.124 kb on + strandat 362.125 kb on - strandat 362.132 kb on - strandat 362.132 kb on - strandat 362.132 kb on - strandat 362.302 kb on - strandat 362.339 kb on + strandat 362.440 kb on + strand, within AO353_01725at 362.620 kb on + strand, within AO353_01725at 362.621 kb on - strand, within AO353_01725at 362.621 kb on - strand, within AO353_01725at 362.621 kb on - strand, within AO353_01725at 362.621 kb on - strand, within AO353_01725at 362.771 kb on + strandat 362.772 kb on - strandat 362.772 kb on - strandat 362.772 kb on - strandat 362.813 kb on + strand, within AO353_01730at 362.814 kb on - strand, within AO353_01730at 362.973 kb on + strand, within AO353_01730at 362.973 kb on + strand, within AO353_01730at 362.973 kb on + strand, within AO353_01730at 362.973 kb on + strand, within AO353_01730at 362.973 kb on + strand, within AO353_01730at 362.974 kb on - strand, within AO353_01730at 362.974 kb on - strand, within AO353_01730at 362.974 kb on - strand, within AO353_01730at 362.974 kb on - strand, within AO353_01730at 362.974 kb on - strand, within AO353_01730at 362.974 kb on - strand, within AO353_01730at 362.985 kb on + strand, within AO353_01730at 362.985 kb on + strand, within AO353_01730at 362.985 kb on + strand, within AO353_01730at 362.986 kb on - strand, within AO353_01730at 362.986 kb on - strand, within AO353_01730at 363.048 kb on + strand, within AO353_01730at 363.048 kb on + strand, within AO353_01730at 363.048 kb on + strand, within AO353_01730at 363.048 kb on + strand, within AO353_01730at 363.048 kb on + strand, within AO353_01730at 363.048 kb on + strand, within AO353_01730at 363.048 kb on + strand, within AO353_01730at 363.049 kb on - strand, within AO353_01730at 363.049 kb on - strand, within AO353_01730at 363.049 kb on - strand, within AO353_01730at 363.049 kb on - strand, within AO353_01730at 363.049 kb on - strand, within AO353_01730at 363.049 kb on - strand, within AO353_01730at 363.049 kb on - strand, within AO353_01730at 363.049 kb on - strand, within AO353_01730at 363.049 kb on - strand, within AO353_01730at 363.049 kb on - strand, within AO353_01730at 363.049 kb on - strand, within AO353_01730at 363.049 kb on - strand, within AO353_01730at 363.049 kb on - strand, within AO353_01730at 363.049 kb on - strand, within AO353_01730at 363.049 kb on - strand, within AO353_01730at 363.049 kb on - strand, within AO353_01730at 363.049 kb on - strand, within AO353_01730at 363.049 kb on - strand, within AO353_01730at 363.087 kb on + strandat 363.087 kb on + strandat 363.087 kb on + strandat 363.087 kb on + strandat 363.087 kb on + strandat 363.088 kb on - strandat 363.099 kb on - strandat 363.099 kb on - strandat 363.136 kb on - strandat 363.144 kb on + strandat 363.145 kb on - strandat 363.647 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Spectinomycin 0.2 mg/ml
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361,366 + AO353_01720 0.59 +1.3
361,366 + AO353_01720 0.59 -1.3
361,366 + AO353_01720 0.59 -0.5
361,366 + AO353_01720 0.59 -2.1
361,366 + AO353_01720 0.59 -2.0
361,366 + AO353_01720 0.59 -0.1
361,366 + AO353_01720 0.59 -0.3
361,366 + AO353_01720 0.59 -1.0
361,366 + AO353_01720 0.59 -0.8
361,366 + AO353_01720 0.59 -0.8
361,366 + AO353_01720 0.59 -0.1
361,367 - AO353_01720 0.59 +0.2
361,367 - AO353_01720 0.59 +0.4
361,367 - AO353_01720 0.59 -0.8
361,367 - AO353_01720 0.59 -0.3
361,367 - AO353_01720 0.59 +0.2
361,367 - AO353_01720 0.59 +1.3
361,367 - AO353_01720 0.59 +0.6
361,420 + AO353_01720 0.62 -1.3
361,420 + AO353_01720 0.62 -1.1
361,421 - AO353_01720 0.62 -1.1
361,540 + AO353_01720 0.69 +0.6
361,540 + AO353_01720 0.69 +0.3
361,540 + AO353_01720 0.69 +1.2
361,540 + AO353_01720 0.69 +0.1
361,540 + AO353_01720 0.69 -0.2
361,540 + AO353_01720 0.69 +0.6
361,540 + AO353_01720 0.69 -0.8
361,540 + AO353_01720 0.69 -0.8
361,540 + -0.8
361,540 + AO353_01720 0.69 -0.6
361,540 + AO353_01720 0.69 +0.6
361,540 + AO353_01720 0.69 -2.0
361,540 + AO353_01720 0.69 +0.3
361,541 - AO353_01720 0.69 -1.7
361,541 - AO353_01720 0.69 -0.8
361,541 - AO353_01720 0.69 -0.7
361,541 - AO353_01720 0.69 -1.5
361,541 - AO353_01720 0.69 -1.2
361,783 + AO353_01720 0.84 -0.2
361,783 + AO353_01720 0.84 +0.2
361,821 + AO353_01720 0.86 -0.1
361,821 + AO353_01720 0.86 -0.0
361,822 - AO353_01720 0.86 +0.4
361,980 + -1.6
362,020 + -0.5
362,020 + -0.7
362,020 + -0.1
362,020 + -1.3
362,021 - +0.8
362,095 + -0.1
362,095 + +0.4
362,095 + +0.5
362,095 + -0.2
362,096 - +3.1
362,096 - +1.2
362,096 - -1.7
362,096 - -3.2
362,096 - -0.0
362,124 + -0.1
362,124 + -0.8
362,125 - -0.9
362,132 - +0.4
362,132 - -0.0
362,132 - -0.8
362,302 - -1.0
362,339 + +0.8
362,440 + AO353_01725 0.26 -1.1
362,620 + AO353_01725 0.66 -1.1
362,621 - AO353_01725 0.66 -0.6
362,621 - AO353_01725 0.66 -1.1
362,621 - AO353_01725 0.66 +0.1
362,621 - AO353_01725 0.66 -0.8
362,771 + -0.8
362,772 - -1.5
362,772 - -0.9
362,772 - -1.4
362,813 + AO353_01730 0.13 +0.6
362,814 - AO353_01730 0.13 +0.7
362,973 + AO353_01730 0.59 -1.4
362,973 + AO353_01730 0.59 -1.0
362,973 + AO353_01730 0.59 -0.5
362,973 + AO353_01730 0.59 +0.9
362,973 + AO353_01730 0.59 +0.4
362,974 - AO353_01730 0.59 +1.2
362,974 - AO353_01730 0.59 +1.2
362,974 - AO353_01730 0.59 -0.5
362,974 - AO353_01730 0.59 +0.4
362,974 - AO353_01730 0.59 +0.4
362,974 - AO353_01730 0.59 -0.3
362,985 + AO353_01730 0.62 +0.4
362,985 + AO353_01730 0.62 +0.8
362,985 + AO353_01730 0.62 -1.1
362,986 - AO353_01730 0.63 +0.7
362,986 - AO353_01730 0.63 -1.8
363,048 + AO353_01730 0.80 +0.2
363,048 + AO353_01730 0.80 -0.2
363,048 + AO353_01730 0.80 -1.3
363,048 + AO353_01730 0.80 -0.6
363,048 + AO353_01730 0.80 -2.1
363,048 + AO353_01730 0.80 +2.8
363,048 + AO353_01730 0.80 -0.8
363,049 - AO353_01730 0.81 -1.3
363,049 - AO353_01730 0.81 +0.2
363,049 - AO353_01730 0.81 -0.2
363,049 - AO353_01730 0.81 +0.9
363,049 - AO353_01730 0.81 +0.2
363,049 - AO353_01730 0.81 +0.4
363,049 - AO353_01730 0.81 +1.5
363,049 - AO353_01730 0.81 -0.7
363,049 - AO353_01730 0.81 -2.1
363,049 - AO353_01730 0.81 -1.3
363,049 - AO353_01730 0.81 +1.3
363,049 - AO353_01730 0.81 -1.1
363,049 - AO353_01730 0.81 -0.2
363,049 - AO353_01730 0.81 +0.1
363,049 - AO353_01730 0.81 -0.1
363,049 - AO353_01730 0.81 +0.8
363,049 - AO353_01730 0.81 +1.5
363,049 - AO353_01730 0.81 -1.2
363,087 + -2.1
363,087 + -1.7
363,087 + +1.2
363,087 + -0.2
363,087 + -1.2
363,088 - -0.4
363,099 - -1.5
363,099 - +3.1
363,136 - +0.8
363,144 + -0.5
363,145 - -0.4
363,647 - +0.5

Or see this region's nucleotide sequence