Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_01655

Experiment: Spectinomycin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_01650 and AO353_01655 are separated by 131 nucleotidesAO353_01655 and AO353_01660 are separated by 136 nucleotides AO353_01650: AO353_01650 - chemotaxis protein, at 346,041 to 348,008 _01650 AO353_01655: AO353_01655 - GntR family transcriptional regulator, at 348,140 to 349,546 _01655 AO353_01660: AO353_01660 - short-chain dehydrogenase, at 349,683 to 350,444 _01660 Position (kb) 348 349 350Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 347.146 kb on + strand, within AO353_01650at 347.147 kb on - strand, within AO353_01650at 347.147 kb on - strand, within AO353_01650at 347.200 kb on + strand, within AO353_01650at 347.201 kb on - strand, within AO353_01650at 347.201 kb on - strand, within AO353_01650at 347.233 kb on + strand, within AO353_01650at 347.234 kb on - strand, within AO353_01650at 347.265 kb on - strand, within AO353_01650at 347.524 kb on + strand, within AO353_01650at 347.524 kb on + strand, within AO353_01650at 347.524 kb on + strand, within AO353_01650at 347.524 kb on + strand, within AO353_01650at 347.525 kb on - strand, within AO353_01650at 347.525 kb on - strand, within AO353_01650at 347.567 kb on + strand, within AO353_01650at 347.568 kb on - strand, within AO353_01650at 347.660 kb on - strand, within AO353_01650at 347.702 kb on + strand, within AO353_01650at 347.789 kb on + strand, within AO353_01650at 347.789 kb on + strand, within AO353_01650at 347.790 kb on - strand, within AO353_01650at 347.800 kb on + strand, within AO353_01650at 347.942 kb on + strandat 347.943 kb on - strandat 348.029 kb on + strandat 348.210 kb on + strandat 348.210 kb on + strandat 348.211 kb on - strandat 348.211 kb on - strandat 348.211 kb on - strandat 348.223 kb on + strandat 348.239 kb on - strandat 348.348 kb on + strand, within AO353_01655at 348.348 kb on + strand, within AO353_01655at 348.348 kb on + strand, within AO353_01655at 348.348 kb on + strand, within AO353_01655at 348.348 kb on + strand, within AO353_01655at 348.348 kb on + strand, within AO353_01655at 348.348 kb on + strand, within AO353_01655at 348.349 kb on - strand, within AO353_01655at 348.349 kb on - strand, within AO353_01655at 348.349 kb on - strand, within AO353_01655at 348.349 kb on - strand, within AO353_01655at 348.349 kb on - strand, within AO353_01655at 348.419 kb on - strand, within AO353_01655at 348.449 kb on + strand, within AO353_01655at 348.450 kb on - strand, within AO353_01655at 348.450 kb on - strand, within AO353_01655at 348.579 kb on + strand, within AO353_01655at 348.579 kb on + strand, within AO353_01655at 348.580 kb on - strand, within AO353_01655at 348.580 kb on - strand, within AO353_01655at 348.580 kb on - strand, within AO353_01655at 348.580 kb on - strand, within AO353_01655at 348.627 kb on + strand, within AO353_01655at 348.628 kb on - strand, within AO353_01655at 348.628 kb on - strand, within AO353_01655at 348.628 kb on - strand, within AO353_01655at 348.628 kb on - strand, within AO353_01655at 348.628 kb on - strand, within AO353_01655at 348.628 kb on - strand, within AO353_01655at 348.628 kb on - strand, within AO353_01655at 348.693 kb on + strand, within AO353_01655at 348.693 kb on + strand, within AO353_01655at 348.693 kb on + strand, within AO353_01655at 348.694 kb on - strand, within AO353_01655at 348.694 kb on - strand, within AO353_01655at 348.716 kb on + strand, within AO353_01655at 348.716 kb on + strand, within AO353_01655at 348.716 kb on + strand, within AO353_01655at 348.716 kb on + strand, within AO353_01655at 348.881 kb on + strand, within AO353_01655at 348.881 kb on + strand, within AO353_01655at 348.882 kb on - strand, within AO353_01655at 348.882 kb on - strand, within AO353_01655at 348.882 kb on - strand, within AO353_01655at 348.983 kb on + strand, within AO353_01655at 349.006 kb on + strand, within AO353_01655at 349.006 kb on + strand, within AO353_01655at 349.007 kb on - strand, within AO353_01655at 349.007 kb on - strand, within AO353_01655at 349.007 kb on - strand, within AO353_01655at 349.007 kb on - strand, within AO353_01655at 349.045 kb on + strand, within AO353_01655at 349.046 kb on - strand, within AO353_01655at 349.046 kb on - strand, within AO353_01655at 349.046 kb on - strand, within AO353_01655at 349.048 kb on + strand, within AO353_01655at 349.048 kb on + strand, within AO353_01655at 349.048 kb on + strand, within AO353_01655at 349.048 kb on + strand, within AO353_01655at 349.048 kb on + strand, within AO353_01655at 349.048 kb on + strand, within AO353_01655at 349.048 kb on + strand, within AO353_01655at 349.048 kb on + strand, within AO353_01655at 349.048 kb on + strand, within AO353_01655at 349.048 kb on + strand, within AO353_01655at 349.048 kb on + strand, within AO353_01655at 349.048 kb on + strand, within AO353_01655at 349.048 kb on + strand, within AO353_01655at 349.048 kb on + strand, within AO353_01655at 349.049 kb on - strand, within AO353_01655at 349.049 kb on - strand, within AO353_01655at 349.049 kb on - strand, within AO353_01655at 349.049 kb on - strand, within AO353_01655at 349.049 kb on - strand, within AO353_01655at 349.049 kb on - strand, within AO353_01655at 349.049 kb on - strand, within AO353_01655at 349.102 kb on - strand, within AO353_01655at 349.102 kb on - strand, within AO353_01655at 349.113 kb on + strand, within AO353_01655at 349.113 kb on + strand, within AO353_01655at 349.113 kb on + strand, within AO353_01655at 349.114 kb on - strand, within AO353_01655at 349.114 kb on - strand, within AO353_01655at 349.114 kb on - strand, within AO353_01655at 349.114 kb on - strand, within AO353_01655at 349.114 kb on - strand, within AO353_01655at 349.117 kb on + strand, within AO353_01655at 349.117 kb on + strand, within AO353_01655at 349.117 kb on + strand, within AO353_01655at 349.161 kb on + strand, within AO353_01655at 349.161 kb on + strand, within AO353_01655at 349.377 kb on + strand, within AO353_01655at 349.377 kb on + strand, within AO353_01655at 349.378 kb on - strand, within AO353_01655at 349.582 kb on + strandat 349.582 kb on + strandat 349.583 kb on - strandat 349.623 kb on - strandat 349.756 kb on + strandat 349.756 kb on + strandat 349.756 kb on + strandat 349.756 kb on + strandat 349.756 kb on + strandat 349.757 kb on - strandat 349.757 kb on - strandat 349.757 kb on - strandat 349.757 kb on - strandat 349.757 kb on - strandat 349.757 kb on - strandat 349.757 kb on - strandat 349.757 kb on - strandat 349.757 kb on - strandat 349.849 kb on + strand, within AO353_01660at 349.975 kb on + strand, within AO353_01660at 349.975 kb on + strand, within AO353_01660at 349.975 kb on + strand, within AO353_01660at 349.975 kb on + strand, within AO353_01660at 349.975 kb on + strand, within AO353_01660at 349.976 kb on - strand, within AO353_01660at 349.976 kb on - strand, within AO353_01660at 349.976 kb on - strand, within AO353_01660at 349.976 kb on - strand, within AO353_01660at 349.976 kb on - strand, within AO353_01660at 349.976 kb on - strand, within AO353_01660at 349.976 kb on - strand, within AO353_01660at 349.976 kb on - strand, within AO353_01660at 349.976 kb on - strand, within AO353_01660at 349.979 kb on + strand, within AO353_01660at 349.979 kb on + strand, within AO353_01660at 349.979 kb on + strand, within AO353_01660at 349.979 kb on + strand, within AO353_01660at 349.980 kb on - strand, within AO353_01660at 349.980 kb on - strand, within AO353_01660at 349.980 kb on - strand, within AO353_01660at 349.980 kb on - strand, within AO353_01660at 349.980 kb on - strand, within AO353_01660at 349.980 kb on - strand, within AO353_01660at 350.068 kb on + strand, within AO353_01660at 350.069 kb on - strand, within AO353_01660at 350.069 kb on - strand, within AO353_01660at 350.069 kb on - strand, within AO353_01660at 350.069 kb on - strand, within AO353_01660at 350.069 kb on - strand, within AO353_01660at 350.186 kb on - strand, within AO353_01660at 350.186 kb on - strand, within AO353_01660at 350.200 kb on + strand, within AO353_01660at 350.200 kb on + strand, within AO353_01660at 350.200 kb on + strand, within AO353_01660at 350.200 kb on + strand, within AO353_01660at 350.200 kb on + strand, within AO353_01660at 350.200 kb on + strand, within AO353_01660at 350.200 kb on + strand, within AO353_01660at 350.200 kb on + strand, within AO353_01660at 350.200 kb on + strand, within AO353_01660at 350.200 kb on + strand, within AO353_01660at 350.200 kb on + strand, within AO353_01660at 350.201 kb on - strand, within AO353_01660at 350.201 kb on - strand, within AO353_01660at 350.201 kb on - strand, within AO353_01660at 350.201 kb on - strand, within AO353_01660at 350.201 kb on - strand, within AO353_01660at 350.201 kb on - strand, within AO353_01660at 350.201 kb on - strand, within AO353_01660at 350.201 kb on - strand, within AO353_01660at 350.201 kb on - strand, within AO353_01660at 350.448 kb on + strandat 350.448 kb on + strandat 350.448 kb on + strandat 350.448 kb on + strandat 350.448 kb on + strandat 350.448 kb on + strandat 350.448 kb on + strandat 350.448 kb on + strandat 350.449 kb on - strandat 350.449 kb on - strandat 350.449 kb on - strandat 350.449 kb on - strandat 350.449 kb on - strandat 350.449 kb on - strandat 350.449 kb on - strandat 350.449 kb on - strandat 350.488 kb on + strandat 350.488 kb on + strandat 350.488 kb on + strandat 350.488 kb on + strandat 350.488 kb on + strandat 350.488 kb on + strandat 350.489 kb on - strandat 350.489 kb on - strandat 350.489 kb on - strandat 350.489 kb on - strandat 350.518 kb on + strandat 350.518 kb on + strandat 350.518 kb on + strandat 350.518 kb on + strandat 350.519 kb on - strandat 350.519 kb on - strandat 350.541 kb on + strandat 350.541 kb on + strandat 350.541 kb on + strandat 350.542 kb on - strandat 350.542 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Spectinomycin 0.2 mg/ml
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347,146 + AO353_01650 0.56 -1.0
347,147 - AO353_01650 0.56 +0.2
347,147 - AO353_01650 0.56 +1.0
347,200 + AO353_01650 0.59 +3.5
347,201 - AO353_01650 0.59 -0.8
347,201 - AO353_01650 0.59 -1.1
347,233 + AO353_01650 0.61 -0.3
347,234 - AO353_01650 0.61 +0.9
347,265 - AO353_01650 0.62 +0.5
347,524 + AO353_01650 0.75 +0.0
347,524 + AO353_01650 0.75 -0.3
347,524 + AO353_01650 0.75 +0.7
347,524 + AO353_01650 0.75 -1.8
347,525 - AO353_01650 0.75 +0.5
347,525 - AO353_01650 0.75 +0.2
347,567 + AO353_01650 0.78 +0.8
347,568 - AO353_01650 0.78 +1.0
347,660 - AO353_01650 0.82 -1.2
347,702 + AO353_01650 0.84 +0.1
347,789 + AO353_01650 0.89 -1.4
347,789 + AO353_01650 0.89 -0.6
347,790 - AO353_01650 0.89 -0.5
347,800 + AO353_01650 0.89 +0.8
347,942 + -0.2
347,943 - +1.2
348,029 + -0.4
348,210 + +1.9
348,210 + +0.7
348,211 - +0.5
348,211 - -0.1
348,211 - -0.1
348,223 + +0.5
348,239 - -0.5
348,348 + AO353_01655 0.15 +1.9
348,348 + AO353_01655 0.15 -1.6
348,348 + AO353_01655 0.15 +0.0
348,348 + AO353_01655 0.15 +0.3
348,348 + AO353_01655 0.15 -0.2
348,348 + AO353_01655 0.15 -0.8
348,348 + AO353_01655 0.15 +1.2
348,349 - AO353_01655 0.15 +0.2
348,349 - AO353_01655 0.15 +0.0
348,349 - AO353_01655 0.15 -0.5
348,349 - AO353_01655 0.15 -0.8
348,349 - AO353_01655 0.15 -2.8
348,419 - AO353_01655 0.20 +0.6
348,449 + AO353_01655 0.22 -0.7
348,450 - AO353_01655 0.22 +0.1
348,450 - AO353_01655 0.22 +0.2
348,579 + AO353_01655 0.31 +2.3
348,579 + AO353_01655 0.31 -0.7
348,580 - AO353_01655 0.31 -0.8
348,580 - AO353_01655 0.31 -0.3
348,580 - AO353_01655 0.31 -1.7
348,580 - AO353_01655 0.31 -1.7
348,627 + AO353_01655 0.35 -1.7
348,628 - AO353_01655 0.35 +0.1
348,628 - AO353_01655 0.35 +0.2
348,628 - AO353_01655 0.35 -2.3
348,628 - AO353_01655 0.35 +2.1
348,628 - AO353_01655 0.35 +2.0
348,628 - AO353_01655 0.35 +0.7
348,628 - AO353_01655 0.35 -0.5
348,693 + AO353_01655 0.39 -0.3
348,693 + AO353_01655 0.39 -1.9
348,693 + AO353_01655 0.39 +1.0
348,694 - AO353_01655 0.39 +0.3
348,694 - AO353_01655 0.39 +0.8
348,716 + AO353_01655 0.41 +0.9
348,716 + AO353_01655 0.41 -1.9
348,716 + AO353_01655 0.41 +0.2
348,716 + AO353_01655 0.41 -0.7
348,881 + AO353_01655 0.53 -0.8
348,881 + AO353_01655 0.53 -2.4
348,882 - AO353_01655 0.53 -0.1
348,882 - AO353_01655 0.53 +1.0
348,882 - AO353_01655 0.53 -1.2
348,983 + AO353_01655 0.60 -0.3
349,006 + AO353_01655 0.62 +1.1
349,006 + AO353_01655 0.62 +0.0
349,007 - AO353_01655 0.62 +0.9
349,007 - AO353_01655 0.62 -0.0
349,007 - AO353_01655 0.62 -1.4
349,007 - AO353_01655 0.62 +0.4
349,045 + AO353_01655 0.64 +0.7
349,046 - AO353_01655 0.64 +0.8
349,046 - AO353_01655 0.64 +1.3
349,046 - AO353_01655 0.64 +1.5
349,048 + AO353_01655 0.65 -0.6
349,048 + AO353_01655 0.65 +0.7
349,048 + AO353_01655 0.65 -0.3
349,048 + AO353_01655 0.65 +0.3
349,048 + AO353_01655 0.65 +1.3
349,048 + AO353_01655 0.65 +0.5
349,048 + AO353_01655 0.65 -0.3
349,048 + AO353_01655 0.65 +1.0
349,048 + AO353_01655 0.65 -0.4
349,048 + AO353_01655 0.65 -1.3
349,048 + AO353_01655 0.65 +0.4
349,048 + AO353_01655 0.65 -1.3
349,048 + AO353_01655 0.65 +0.7
349,048 + AO353_01655 0.65 +0.2
349,049 - AO353_01655 0.65 -0.6
349,049 - AO353_01655 0.65 -0.8
349,049 - AO353_01655 0.65 +0.8
349,049 - AO353_01655 0.65 -2.1
349,049 - AO353_01655 0.65 -0.5
349,049 - AO353_01655 0.65 -1.4
349,049 - AO353_01655 0.65 +1.2
349,102 - AO353_01655 0.68 -0.6
349,102 - AO353_01655 0.68 +0.1
349,113 + AO353_01655 0.69 +1.0
349,113 + AO353_01655 0.69 -0.8
349,113 + AO353_01655 0.69 -1.3
349,114 - AO353_01655 0.69 +2.2
349,114 - AO353_01655 0.69 -1.3
349,114 - AO353_01655 0.69 -0.1
349,114 - AO353_01655 0.69 +1.2
349,114 - AO353_01655 0.69 +0.4
349,117 + AO353_01655 0.69 +0.8
349,117 + AO353_01655 0.69 +0.5
349,117 + AO353_01655 0.69 -0.8
349,161 + AO353_01655 0.73 +0.5
349,161 + AO353_01655 0.73 -0.4
349,377 + AO353_01655 0.88 +1.1
349,377 + AO353_01655 0.88 -1.0
349,378 - AO353_01655 0.88 -0.2
349,582 + +1.1
349,582 + +1.5
349,583 - -0.3
349,623 - -1.7
349,756 + -2.0
349,756 + -0.8
349,756 + -1.4
349,756 + -0.4
349,756 + +1.0
349,757 - -0.4
349,757 - +0.4
349,757 - -1.2
349,757 - -1.7
349,757 - +0.0
349,757 - -1.1
349,757 - -0.3
349,757 - +0.8
349,757 - +0.1
349,849 + AO353_01660 0.22 -0.5
349,975 + AO353_01660 0.38 +0.1
349,975 + AO353_01660 0.38 +0.0
349,975 + AO353_01660 0.38 -2.1
349,975 + AO353_01660 0.38 -0.6
349,975 + AO353_01660 0.38 -0.3
349,976 - AO353_01660 0.38 -0.1
349,976 - AO353_01660 0.38 -0.2
349,976 - AO353_01660 0.38 +0.4
349,976 - AO353_01660 0.38 +0.4
349,976 - AO353_01660 0.38 -2.2
349,976 - AO353_01660 0.38 +0.5
349,976 - AO353_01660 0.38 +0.6
349,976 - AO353_01660 0.38 -0.2
349,976 - AO353_01660 0.38 -0.4
349,979 + AO353_01660 0.39 -1.0
349,979 + AO353_01660 0.39 -0.5
349,979 + AO353_01660 0.39 -2.1
349,979 + AO353_01660 0.39 +0.4
349,980 - AO353_01660 0.39 +0.1
349,980 - AO353_01660 0.39 -0.7
349,980 - AO353_01660 0.39 -0.1
349,980 - AO353_01660 0.39 +0.8
349,980 - AO353_01660 0.39 -0.1
349,980 - AO353_01660 0.39 +0.7
350,068 + AO353_01660 0.51 +0.2
350,069 - AO353_01660 0.51 -0.1
350,069 - AO353_01660 0.51 +1.7
350,069 - AO353_01660 0.51 +0.3
350,069 - AO353_01660 0.51 +1.3
350,069 - AO353_01660 0.51 +0.1
350,186 - AO353_01660 0.66 -0.9
350,186 - AO353_01660 0.66 -1.2
350,200 + AO353_01660 0.68 +0.5
350,200 + AO353_01660 0.68 +1.7
350,200 + AO353_01660 0.68 -0.4
350,200 + AO353_01660 0.68 +0.2
350,200 + AO353_01660 0.68 -1.5
350,200 + AO353_01660 0.68 +0.0
350,200 + AO353_01660 0.68 +0.5
350,200 + AO353_01660 0.68 +0.4
350,200 + AO353_01660 0.68 -0.6
350,200 + AO353_01660 0.68 -1.3
350,200 + AO353_01660 0.68 -0.0
350,201 - AO353_01660 0.68 +0.1
350,201 - AO353_01660 0.68 +1.1
350,201 - AO353_01660 0.68 +0.0
350,201 - AO353_01660 0.68 -0.8
350,201 - AO353_01660 0.68 +0.6
350,201 - AO353_01660 0.68 -0.1
350,201 - AO353_01660 0.68 +0.5
350,201 - AO353_01660 0.68 +0.2
350,201 - AO353_01660 0.68 +0.1
350,448 + +0.5
350,448 + +0.1
350,448 + +0.0
350,448 + +1.2
350,448 + +1.2
350,448 + +0.5
350,448 + -0.4
350,448 + -0.4
350,449 - -1.7
350,449 - -0.0
350,449 - +0.1
350,449 - -0.5
350,449 - -0.3
350,449 - +1.3
350,449 - +1.2
350,449 - -1.5
350,488 + +0.9
350,488 + +0.3
350,488 + -1.1
350,488 + +0.4
350,488 + +0.0
350,488 + +0.7
350,489 - +0.7
350,489 - +0.7
350,489 - -0.1
350,489 - +0.1
350,518 + -0.1
350,518 + +0.7
350,518 + +2.5
350,518 + +0.6
350,519 - -0.4
350,519 - +0.8
350,541 + -0.4
350,541 + -0.5
350,541 + -2.8
350,542 - -2.7
350,542 - -1.3

Or see this region's nucleotide sequence