Experiment: Spectinomycin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_01645 and AO353_01650 are separated by 159 nucleotides AO353_01650 and AO353_01655 are separated by 131 nucleotides
AO353_01645: AO353_01645 - hypothetical protein, at 345,123 to 345,881
_01645
AO353_01650: AO353_01650 - chemotaxis protein, at 346,041 to 348,008
_01650
AO353_01655: AO353_01655 - GntR family transcriptional regulator, at 348,140 to 349,546
_01655
Position (kb) 346
347
348
349 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 345.051 kb on + strand at 345.052 kb on - strand at 345.052 kb on - strand at 345.068 kb on - strand at 345.068 kb on - strand at 345.074 kb on + strand at 345.074 kb on + strand at 345.074 kb on + strand at 345.075 kb on - strand at 345.075 kb on - strand at 345.075 kb on - strand at 345.093 kb on + strand at 345.094 kb on - strand at 345.094 kb on - strand at 345.094 kb on - strand at 345.094 kb on - strand at 345.095 kb on + strand at 345.096 kb on - strand at 345.136 kb on + strand at 345.136 kb on + strand at 345.136 kb on + strand at 345.136 kb on + strand at 345.136 kb on + strand at 345.136 kb on + strand at 345.136 kb on + strand at 345.136 kb on + strand at 345.136 kb on + strand at 345.137 kb on - strand at 345.137 kb on - strand at 345.137 kb on - strand at 345.137 kb on - strand at 345.137 kb on - strand at 345.137 kb on - strand at 345.139 kb on + strand at 345.139 kb on + strand at 345.139 kb on + strand at 345.139 kb on + strand at 345.139 kb on + strand at 345.139 kb on + strand at 345.139 kb on + strand at 345.139 kb on + strand at 345.140 kb on - strand at 345.140 kb on - strand at 345.140 kb on - strand at 345.140 kb on - strand at 345.142 kb on + strand at 345.142 kb on + strand at 345.143 kb on - strand at 345.143 kb on - strand at 345.157 kb on + strand at 345.157 kb on + strand at 345.158 kb on - strand at 345.174 kb on + strand at 345.174 kb on + strand at 345.174 kb on + strand at 345.175 kb on - strand at 345.200 kb on + strand, within AO353_01645 at 345.200 kb on + strand, within AO353_01645 at 345.201 kb on - strand, within AO353_01645 at 345.481 kb on + strand, within AO353_01645 at 345.481 kb on + strand, within AO353_01645 at 345.481 kb on + strand, within AO353_01645 at 345.481 kb on + strand, within AO353_01645 at 345.482 kb on - strand, within AO353_01645 at 345.482 kb on - strand, within AO353_01645 at 345.482 kb on - strand, within AO353_01645 at 345.482 kb on - strand, within AO353_01645 at 345.482 kb on - strand, within AO353_01645 at 345.482 kb on - strand, within AO353_01645 at 345.592 kb on + strand, within AO353_01645 at 345.593 kb on - strand, within AO353_01645 at 345.690 kb on + strand, within AO353_01645 at 345.690 kb on + strand, within AO353_01645 at 345.691 kb on - strand, within AO353_01645 at 345.691 kb on - strand, within AO353_01645 at 345.691 kb on - strand, within AO353_01645 at 345.691 kb on - strand, within AO353_01645 at 345.691 kb on - strand, within AO353_01645 at 345.691 kb on - strand, within AO353_01645 at 345.720 kb on + strand, within AO353_01645 at 345.721 kb on - strand, within AO353_01645 at 345.738 kb on + strand, within AO353_01645 at 345.739 kb on - strand, within AO353_01645 at 345.809 kb on + strand at 345.869 kb on + strand at 345.870 kb on - strand at 345.873 kb on + strand at 345.873 kb on + strand at 345.873 kb on + strand at 345.873 kb on + strand at 345.873 kb on + strand at 345.874 kb on - strand at 345.874 kb on - strand at 345.874 kb on - strand at 345.883 kb on - strand at 345.949 kb on + strand at 345.949 kb on + strand at 345.949 kb on + strand at 345.949 kb on + strand at 345.949 kb on + strand at 345.950 kb on - strand at 345.950 kb on - strand at 345.969 kb on + strand at 345.969 kb on + strand at 345.977 kb on + strand at 345.977 kb on + strand at 345.978 kb on - strand at 345.978 kb on - strand at 345.978 kb on - strand at 345.978 kb on - strand at 346.042 kb on + strand at 346.042 kb on + strand at 346.042 kb on + strand at 346.042 kb on + strand at 346.043 kb on - strand at 346.043 kb on - strand at 346.043 kb on - strand at 346.043 kb on - strand at 346.043 kb on - strand at 346.043 kb on - strand at 346.043 kb on - strand at 346.043 kb on - strand at 346.043 kb on - strand at 346.043 kb on - strand at 346.262 kb on + strand, within AO353_01650 at 346.332 kb on + strand, within AO353_01650 at 346.332 kb on + strand, within AO353_01650 at 346.332 kb on + strand, within AO353_01650 at 346.333 kb on - strand, within AO353_01650 at 346.333 kb on - strand, within AO353_01650 at 346.333 kb on - strand, within AO353_01650 at 346.637 kb on + strand, within AO353_01650 at 346.637 kb on + strand, within AO353_01650 at 346.638 kb on - strand, within AO353_01650 at 346.638 kb on - strand, within AO353_01650 at 347.036 kb on + strand, within AO353_01650 at 347.037 kb on - strand, within AO353_01650 at 347.146 kb on + strand, within AO353_01650 at 347.147 kb on - strand, within AO353_01650 at 347.147 kb on - strand, within AO353_01650 at 347.200 kb on + strand, within AO353_01650 at 347.201 kb on - strand, within AO353_01650 at 347.201 kb on - strand, within AO353_01650 at 347.233 kb on + strand, within AO353_01650 at 347.234 kb on - strand, within AO353_01650 at 347.265 kb on - strand, within AO353_01650 at 347.524 kb on + strand, within AO353_01650 at 347.524 kb on + strand, within AO353_01650 at 347.524 kb on + strand, within AO353_01650 at 347.524 kb on + strand, within AO353_01650 at 347.525 kb on - strand, within AO353_01650 at 347.525 kb on - strand, within AO353_01650 at 347.567 kb on + strand, within AO353_01650 at 347.568 kb on - strand, within AO353_01650 at 347.660 kb on - strand, within AO353_01650 at 347.702 kb on + strand, within AO353_01650 at 347.789 kb on + strand, within AO353_01650 at 347.789 kb on + strand, within AO353_01650 at 347.790 kb on - strand, within AO353_01650 at 347.800 kb on + strand, within AO353_01650 at 347.942 kb on + strand at 347.943 kb on - strand at 348.029 kb on + strand at 348.210 kb on + strand at 348.210 kb on + strand at 348.211 kb on - strand at 348.211 kb on - strand at 348.211 kb on - strand at 348.223 kb on + strand at 348.239 kb on - strand at 348.348 kb on + strand, within AO353_01655 at 348.348 kb on + strand, within AO353_01655 at 348.348 kb on + strand, within AO353_01655 at 348.348 kb on + strand, within AO353_01655 at 348.348 kb on + strand, within AO353_01655 at 348.348 kb on + strand, within AO353_01655 at 348.348 kb on + strand, within AO353_01655 at 348.349 kb on - strand, within AO353_01655 at 348.349 kb on - strand, within AO353_01655 at 348.349 kb on - strand, within AO353_01655 at 348.349 kb on - strand, within AO353_01655 at 348.349 kb on - strand, within AO353_01655 at 348.419 kb on - strand, within AO353_01655 at 348.449 kb on + strand, within AO353_01655 at 348.450 kb on - strand, within AO353_01655 at 348.450 kb on - strand, within AO353_01655 at 348.579 kb on + strand, within AO353_01655 at 348.579 kb on + strand, within AO353_01655 at 348.580 kb on - strand, within AO353_01655 at 348.580 kb on - strand, within AO353_01655 at 348.580 kb on - strand, within AO353_01655 at 348.580 kb on - strand, within AO353_01655 at 348.627 kb on + strand, within AO353_01655 at 348.628 kb on - strand, within AO353_01655 at 348.628 kb on - strand, within AO353_01655 at 348.628 kb on - strand, within AO353_01655 at 348.628 kb on - strand, within AO353_01655 at 348.628 kb on - strand, within AO353_01655 at 348.628 kb on - strand, within AO353_01655 at 348.628 kb on - strand, within AO353_01655 at 348.693 kb on + strand, within AO353_01655 at 348.693 kb on + strand, within AO353_01655 at 348.693 kb on + strand, within AO353_01655 at 348.694 kb on - strand, within AO353_01655 at 348.694 kb on - strand, within AO353_01655 at 348.716 kb on + strand, within AO353_01655 at 348.716 kb on + strand, within AO353_01655 at 348.716 kb on + strand, within AO353_01655 at 348.716 kb on + strand, within AO353_01655 at 348.881 kb on + strand, within AO353_01655 at 348.881 kb on + strand, within AO353_01655 at 348.882 kb on - strand, within AO353_01655 at 348.882 kb on - strand, within AO353_01655 at 348.882 kb on - strand, within AO353_01655 at 348.983 kb on + strand, within AO353_01655 at 349.006 kb on + strand, within AO353_01655 at 349.006 kb on + strand, within AO353_01655 at 349.007 kb on - strand, within AO353_01655 at 349.007 kb on - strand, within AO353_01655 at 349.007 kb on - strand, within AO353_01655 at 349.007 kb on - strand, within AO353_01655
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.2 mg/ml remove 345,051 + +0.0 345,052 - +1.0 345,052 - -0.9 345,068 - -1.5 345,068 - +1.5 345,074 + -1.3 345,074 + -0.4 345,074 + -1.1 345,075 - -1.5 345,075 - +0.1 345,075 - -1.4 345,093 + +0.3 345,094 - -0.4 345,094 - +0.3 345,094 - -1.0 345,094 - +0.8 345,095 + -2.2 345,096 - -1.5 345,136 + +0.2 345,136 + +0.8 345,136 + +0.0 345,136 + -0.1 345,136 + +0.2 345,136 + -0.3 345,136 + +1.1 345,136 + +0.1 345,136 + -0.7 345,137 - +0.9 345,137 - +0.0 345,137 - +0.3 345,137 - +2.1 345,137 - +0.2 345,137 - +1.8 345,139 + -0.5 345,139 + +0.0 345,139 + -1.1 345,139 + +0.2 345,139 + +0.1 345,139 + -0.9 345,139 + -1.3 345,139 + +0.5 345,140 - -2.2 345,140 - -1.1 345,140 - -1.0 345,140 - +0.1 345,142 + +0.2 345,142 + +1.0 345,143 - -1.4 345,143 - -0.3 345,157 + -0.5 345,157 + +0.3 345,158 - +0.4 345,174 + -1.1 345,174 + +0.7 345,174 + +0.8 345,175 - +0.1 345,200 + AO353_01645 0.10 +1.6 345,200 + AO353_01645 0.10 -0.9 345,201 - AO353_01645 0.10 +0.2 345,481 + AO353_01645 0.47 -2.0 345,481 + AO353_01645 0.47 -0.3 345,481 + AO353_01645 0.47 +0.7 345,481 + AO353_01645 0.47 -0.5 345,482 - AO353_01645 0.47 +2.2 345,482 - AO353_01645 0.47 +2.3 345,482 - AO353_01645 0.47 +0.8 345,482 - AO353_01645 0.47 +1.0 345,482 - AO353_01645 0.47 +0.5 345,482 - AO353_01645 0.47 +1.8 345,592 + AO353_01645 0.62 -0.3 345,593 - AO353_01645 0.62 +0.8 345,690 + AO353_01645 0.75 +0.3 345,690 + AO353_01645 0.75 -1.3 345,691 - AO353_01645 0.75 +0.3 345,691 - AO353_01645 0.75 -2.6 345,691 - AO353_01645 0.75 +0.0 345,691 - AO353_01645 0.75 +0.9 345,691 - AO353_01645 0.75 -1.2 345,691 - AO353_01645 0.75 -0.1 345,720 + AO353_01645 0.79 +0.3 345,721 - AO353_01645 0.79 +1.1 345,738 + AO353_01645 0.81 +0.7 345,739 - AO353_01645 0.81 -0.6 345,809 + +0.3 345,869 + +1.3 345,870 - -1.4 345,873 + -0.7 345,873 + -0.5 345,873 + +0.5 345,873 + +0.2 345,873 + +0.3 345,874 - +0.5 345,874 - -0.3 345,874 - -1.8 345,883 - -0.6 345,949 + +1.1 345,949 + +0.9 345,949 + -1.5 345,949 + -1.8 345,949 + -0.5 345,950 - -0.2 345,950 - -1.7 345,969 + -1.3 345,969 + -0.0 345,977 + +0.7 345,977 + +0.5 345,978 - -1.4 345,978 - -2.5 345,978 - -0.8 345,978 - -0.6 346,042 + +0.8 346,042 + -0.5 346,042 + -0.8 346,042 + -0.8 346,043 - +0.5 346,043 - -1.3 346,043 - -1.0 346,043 - -1.2 346,043 - +0.8 346,043 - +0.3 346,043 - -0.9 346,043 - -1.3 346,043 - -1.3 346,043 - -2.6 346,262 + AO353_01650 0.11 +0.5 346,332 + AO353_01650 0.15 -0.3 346,332 + AO353_01650 0.15 -0.8 346,332 + AO353_01650 0.15 -1.5 346,333 - AO353_01650 0.15 -0.5 346,333 - AO353_01650 0.15 +0.7 346,333 - AO353_01650 0.15 -0.4 346,637 + AO353_01650 0.30 -0.6 346,637 + AO353_01650 0.30 +0.3 346,638 - AO353_01650 0.30 +0.4 346,638 - AO353_01650 0.30 -1.5 347,036 + AO353_01650 0.51 -0.6 347,037 - AO353_01650 0.51 -2.2 347,146 + AO353_01650 0.56 -1.0 347,147 - AO353_01650 0.56 +0.2 347,147 - AO353_01650 0.56 +1.0 347,200 + AO353_01650 0.59 +3.5 347,201 - AO353_01650 0.59 -0.8 347,201 - AO353_01650 0.59 -1.1 347,233 + AO353_01650 0.61 -0.3 347,234 - AO353_01650 0.61 +0.9 347,265 - AO353_01650 0.62 +0.5 347,524 + AO353_01650 0.75 +0.0 347,524 + AO353_01650 0.75 -0.3 347,524 + AO353_01650 0.75 +0.7 347,524 + AO353_01650 0.75 -1.8 347,525 - AO353_01650 0.75 +0.5 347,525 - AO353_01650 0.75 +0.2 347,567 + AO353_01650 0.78 +0.8 347,568 - AO353_01650 0.78 +1.0 347,660 - AO353_01650 0.82 -1.2 347,702 + AO353_01650 0.84 +0.1 347,789 + AO353_01650 0.89 -1.4 347,789 + AO353_01650 0.89 -0.6 347,790 - AO353_01650 0.89 -0.5 347,800 + AO353_01650 0.89 +0.8 347,942 + -0.2 347,943 - +1.2 348,029 + -0.4 348,210 + +1.9 348,210 + +0.7 348,211 - +0.5 348,211 - -0.1 348,211 - -0.1 348,223 + +0.5 348,239 - -0.5 348,348 + AO353_01655 0.15 +1.9 348,348 + AO353_01655 0.15 -1.6 348,348 + AO353_01655 0.15 +0.0 348,348 + AO353_01655 0.15 +0.3 348,348 + AO353_01655 0.15 -0.2 348,348 + AO353_01655 0.15 -0.8 348,348 + AO353_01655 0.15 +1.2 348,349 - AO353_01655 0.15 +0.2 348,349 - AO353_01655 0.15 +0.0 348,349 - AO353_01655 0.15 -0.5 348,349 - AO353_01655 0.15 -0.8 348,349 - AO353_01655 0.15 -2.8 348,419 - AO353_01655 0.20 +0.6 348,449 + AO353_01655 0.22 -0.7 348,450 - AO353_01655 0.22 +0.1 348,450 - AO353_01655 0.22 +0.2 348,579 + AO353_01655 0.31 +2.3 348,579 + AO353_01655 0.31 -0.7 348,580 - AO353_01655 0.31 -0.8 348,580 - AO353_01655 0.31 -0.3 348,580 - AO353_01655 0.31 -1.7 348,580 - AO353_01655 0.31 -1.7 348,627 + AO353_01655 0.35 -1.7 348,628 - AO353_01655 0.35 +0.1 348,628 - AO353_01655 0.35 +0.2 348,628 - AO353_01655 0.35 -2.3 348,628 - AO353_01655 0.35 +2.1 348,628 - AO353_01655 0.35 +2.0 348,628 - AO353_01655 0.35 +0.7 348,628 - AO353_01655 0.35 -0.5 348,693 + AO353_01655 0.39 -0.3 348,693 + AO353_01655 0.39 -1.9 348,693 + AO353_01655 0.39 +1.0 348,694 - AO353_01655 0.39 +0.3 348,694 - AO353_01655 0.39 +0.8 348,716 + AO353_01655 0.41 +0.9 348,716 + AO353_01655 0.41 -1.9 348,716 + AO353_01655 0.41 +0.2 348,716 + AO353_01655 0.41 -0.7 348,881 + AO353_01655 0.53 -0.8 348,881 + AO353_01655 0.53 -2.4 348,882 - AO353_01655 0.53 -0.1 348,882 - AO353_01655 0.53 +1.0 348,882 - AO353_01655 0.53 -1.2 348,983 + AO353_01655 0.60 -0.3 349,006 + AO353_01655 0.62 +1.1 349,006 + AO353_01655 0.62 +0.0 349,007 - AO353_01655 0.62 +0.9 349,007 - AO353_01655 0.62 -0.0 349,007 - AO353_01655 0.62 -1.4 349,007 - AO353_01655 0.62 +0.4
Or see this region's nucleotide sequence