Experiment: Spectinomycin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00745 and AO353_00750 are separated by 168 nucleotides AO353_00750 and AO353_00755 are separated by 376 nucleotides
AO353_00745: AO353_00745 - guanine deaminase, at 163,714 to 165,018
_00745
AO353_00750: AO353_00750 - GntR family transcriptional regulator, at 165,187 to 165,951
_00750
AO353_00755: AO353_00755 - hypothetical protein, at 166,328 to 167,521
_00755
Position (kb) 165
166 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 164.230 kb on + strand, within AO353_00745 at 164.231 kb on - strand, within AO353_00745 at 164.231 kb on - strand, within AO353_00745 at 164.257 kb on + strand, within AO353_00745 at 164.257 kb on + strand, within AO353_00745 at 164.257 kb on + strand, within AO353_00745 at 164.257 kb on + strand, within AO353_00745 at 164.257 kb on + strand, within AO353_00745 at 164.258 kb on - strand, within AO353_00745 at 164.258 kb on - strand, within AO353_00745 at 164.312 kb on - strand, within AO353_00745 at 164.312 kb on - strand, within AO353_00745 at 164.398 kb on + strand at 164.398 kb on + strand, within AO353_00745 at 164.398 kb on + strand, within AO353_00745 at 164.398 kb on + strand, within AO353_00745 at 164.398 kb on + strand, within AO353_00745 at 164.398 kb on + strand, within AO353_00745 at 164.398 kb on + strand, within AO353_00745 at 164.398 kb on + strand, within AO353_00745 at 164.399 kb on - strand, within AO353_00745 at 164.399 kb on - strand, within AO353_00745 at 164.399 kb on - strand, within AO353_00745 at 164.399 kb on - strand, within AO353_00745 at 164.399 kb on - strand, within AO353_00745 at 164.399 kb on - strand, within AO353_00745 at 164.485 kb on + strand, within AO353_00745 at 164.486 kb on - strand, within AO353_00745 at 164.486 kb on - strand at 164.494 kb on + strand, within AO353_00745 at 164.494 kb on + strand, within AO353_00745 at 164.495 kb on - strand, within AO353_00745 at 164.731 kb on + strand, within AO353_00745 at 164.731 kb on + strand, within AO353_00745 at 164.732 kb on - strand, within AO353_00745 at 164.732 kb on - strand, within AO353_00745 at 164.732 kb on - strand, within AO353_00745 at 164.732 kb on - strand, within AO353_00745 at 164.782 kb on + strand, within AO353_00745 at 164.783 kb on - strand, within AO353_00745 at 164.878 kb on + strand, within AO353_00745 at 164.878 kb on + strand, within AO353_00745 at 164.878 kb on + strand, within AO353_00745 at 164.878 kb on + strand, within AO353_00745 at 164.878 kb on + strand, within AO353_00745 at 164.878 kb on + strand, within AO353_00745 at 164.878 kb on + strand, within AO353_00745 at 164.879 kb on - strand, within AO353_00745 at 164.879 kb on - strand, within AO353_00745 at 164.879 kb on - strand, within AO353_00745 at 164.879 kb on - strand, within AO353_00745 at 164.879 kb on - strand, within AO353_00745 at 164.879 kb on - strand, within AO353_00745 at 164.879 kb on - strand, within AO353_00745 at 164.986 kb on + strand at 164.987 kb on - strand at 164.987 kb on - strand at 165.002 kb on + strand at 165.002 kb on + strand at 165.002 kb on + strand at 165.002 kb on + strand at 165.002 kb on + strand at 165.002 kb on + strand at 165.002 kb on + strand at 165.003 kb on - strand at 165.003 kb on - strand at 165.003 kb on - strand at 165.003 kb on - strand at 165.016 kb on + strand at 165.072 kb on + strand at 165.111 kb on + strand at 165.111 kb on + strand at 165.111 kb on + strand at 165.112 kb on - strand at 165.142 kb on - strand at 165.142 kb on - strand at 165.185 kb on + strand at 165.186 kb on - strand at 165.186 kb on - strand at 165.186 kb on - strand at 165.384 kb on - strand, within AO353_00750 at 165.384 kb on - strand, within AO353_00750 at 165.413 kb on + strand, within AO353_00750 at 165.613 kb on + strand, within AO353_00750 at 165.664 kb on + strand, within AO353_00750 at 165.665 kb on - strand, within AO353_00750 at 165.861 kb on + strand, within AO353_00750 at 165.861 kb on + strand, within AO353_00750 at 165.862 kb on - strand, within AO353_00750 at 165.862 kb on - strand, within AO353_00750 at 165.869 kb on + strand, within AO353_00750 at 165.870 kb on - strand, within AO353_00750 at 165.870 kb on - strand, within AO353_00750 at 165.995 kb on + strand at 165.996 kb on - strand at 165.996 kb on - strand at 165.996 kb on - strand at 165.996 kb on - strand at 165.996 kb on - strand at 165.998 kb on + strand at 165.999 kb on - strand at 165.999 kb on - strand at 165.999 kb on - strand at 166.023 kb on + strand at 166.023 kb on + strand at 166.023 kb on + strand at 166.023 kb on + strand at 166.023 kb on + strand at 166.023 kb on + strand at 166.024 kb on - strand at 166.024 kb on - strand at 166.024 kb on - strand at 166.024 kb on - strand at 166.031 kb on - strand at 166.049 kb on + strand at 166.049 kb on + strand at 166.050 kb on - strand at 166.050 kb on - strand at 166.078 kb on - strand at 166.078 kb on - strand at 166.085 kb on + strand at 166.085 kb on + strand at 166.085 kb on + strand at 166.085 kb on + strand at 166.086 kb on - strand at 166.087 kb on + strand at 166.087 kb on + strand at 166.087 kb on + strand at 166.087 kb on + strand at 166.087 kb on + strand at 166.087 kb on + strand at 166.088 kb on - strand at 166.088 kb on - strand at 166.088 kb on - strand at 166.088 kb on - strand at 166.088 kb on - strand at 166.088 kb on - strand at 166.088 kb on - strand at 166.088 kb on - strand at 166.088 kb on - strand at 166.088 kb on - strand at 166.101 kb on + strand at 166.101 kb on + strand at 166.101 kb on + strand at 166.102 kb on - strand at 166.123 kb on + strand at 166.124 kb on - strand at 166.129 kb on + strand at 166.129 kb on + strand at 166.209 kb on + strand at 166.226 kb on + strand at 166.235 kb on - strand at 166.295 kb on + strand at 166.295 kb on + strand at 166.295 kb on + strand at 166.296 kb on - strand at 166.296 kb on - strand at 166.296 kb on - strand at 166.296 kb on - strand at 166.301 kb on + strand at 166.301 kb on + strand at 166.301 kb on + strand at 166.301 kb on + strand at 166.301 kb on + strand at 166.301 kb on + strand at 166.302 kb on - strand at 166.302 kb on - strand at 166.302 kb on - strand at 166.302 kb on - strand at 166.302 kb on - strand at 166.302 kb on - strand at 166.302 kb on - strand at 166.302 kb on - strand at 166.302 kb on - strand at 166.303 kb on + strand at 166.399 kb on + strand at 166.399 kb on + strand at 166.400 kb on - strand at 166.622 kb on + strand, within AO353_00755 at 166.643 kb on + strand, within AO353_00755 at 166.643 kb on + strand, within AO353_00755 at 166.644 kb on - strand, within AO353_00755 at 166.644 kb on - strand, within AO353_00755 at 166.826 kb on + strand, within AO353_00755 at 166.827 kb on - strand, within AO353_00755 at 166.827 kb on - strand, within AO353_00755 at 166.827 kb on - strand, within AO353_00755 at 166.827 kb on - strand, within AO353_00755 at 166.827 kb on - strand, within AO353_00755
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.2 mg/ml remove 164,230 + AO353_00745 0.40 +1.7 164,231 - AO353_00745 0.40 +0.5 164,231 - AO353_00745 0.40 -0.0 164,257 + AO353_00745 0.42 -1.7 164,257 + AO353_00745 0.42 -0.2 164,257 + AO353_00745 0.42 -0.5 164,257 + AO353_00745 0.42 -0.6 164,257 + AO353_00745 0.42 -0.0 164,258 - AO353_00745 0.42 -2.0 164,258 - AO353_00745 0.42 +1.3 164,312 - AO353_00745 0.46 +0.4 164,312 - AO353_00745 0.46 +0.8 164,398 + -0.9 164,398 + AO353_00745 0.52 -1.3 164,398 + AO353_00745 0.52 +0.9 164,398 + AO353_00745 0.52 +0.6 164,398 + AO353_00745 0.52 -0.9 164,398 + AO353_00745 0.52 -3.2 164,398 + AO353_00745 0.52 -0.3 164,398 + AO353_00745 0.52 -2.3 164,399 - AO353_00745 0.52 -0.9 164,399 - AO353_00745 0.52 -0.1 164,399 - AO353_00745 0.52 -0.7 164,399 - AO353_00745 0.52 +0.8 164,399 - AO353_00745 0.52 -0.5 164,399 - AO353_00745 0.52 -2.2 164,485 + AO353_00745 0.59 -0.9 164,486 - AO353_00745 0.59 -1.2 164,486 - -0.1 164,494 + AO353_00745 0.60 -1.1 164,494 + AO353_00745 0.60 -0.1 164,495 - AO353_00745 0.60 -0.1 164,731 + AO353_00745 0.78 -1.7 164,731 + AO353_00745 0.78 -0.2 164,732 - AO353_00745 0.78 -1.2 164,732 - AO353_00745 0.78 +0.3 164,732 - AO353_00745 0.78 +0.5 164,732 - AO353_00745 0.78 -0.3 164,782 + AO353_00745 0.82 +0.6 164,783 - AO353_00745 0.82 +0.6 164,878 + AO353_00745 0.89 -0.1 164,878 + AO353_00745 0.89 -1.3 164,878 + AO353_00745 0.89 +1.5 164,878 + AO353_00745 0.89 -0.3 164,878 + AO353_00745 0.89 +0.3 164,878 + AO353_00745 0.89 -1.0 164,878 + AO353_00745 0.89 +0.7 164,879 - AO353_00745 0.89 +2.3 164,879 - AO353_00745 0.89 +0.5 164,879 - AO353_00745 0.89 +0.6 164,879 - AO353_00745 0.89 -0.2 164,879 - AO353_00745 0.89 +0.7 164,879 - AO353_00745 0.89 +0.1 164,879 - AO353_00745 0.89 -0.3 164,986 + +1.1 164,987 - -0.1 164,987 - +2.8 165,002 + +0.5 165,002 + -0.1 165,002 + +0.8 165,002 + -0.6 165,002 + +0.0 165,002 + +1.5 165,002 + -2.1 165,003 - +2.2 165,003 - -1.6 165,003 - +1.5 165,003 - -0.5 165,016 + +1.7 165,072 + +0.8 165,111 + -0.8 165,111 + -0.3 165,111 + +0.6 165,112 - -2.4 165,142 - -0.5 165,142 - +0.5 165,185 + +1.0 165,186 - -0.6 165,186 - +0.8 165,186 - +1.2 165,384 - AO353_00750 0.26 -1.1 165,384 - AO353_00750 0.26 +0.1 165,413 + AO353_00750 0.30 +0.2 165,613 + AO353_00750 0.56 -2.1 165,664 + AO353_00750 0.62 -1.6 165,665 - AO353_00750 0.62 -1.9 165,861 + AO353_00750 0.88 -2.3 165,861 + AO353_00750 0.88 -1.1 165,862 - AO353_00750 0.88 -0.5 165,862 - AO353_00750 0.88 -0.5 165,869 + AO353_00750 0.89 -2.1 165,870 - AO353_00750 0.89 +1.2 165,870 - AO353_00750 0.89 -0.9 165,995 + -0.3 165,996 - -0.3 165,996 - +1.5 165,996 - -0.7 165,996 - +0.1 165,996 - +0.0 165,998 + -0.8 165,999 - -0.3 165,999 - +1.1 165,999 - +1.3 166,023 + -0.5 166,023 + -0.7 166,023 + -0.7 166,023 + -0.3 166,023 + -0.1 166,023 + -1.1 166,024 - +1.1 166,024 - -0.5 166,024 - -0.5 166,024 - +1.5 166,031 - +0.2 166,049 + +0.5 166,049 + -0.9 166,050 - -0.3 166,050 - -0.7 166,078 - -2.1 166,078 - -0.3 166,085 + -1.0 166,085 + -1.5 166,085 + -0.7 166,085 + +0.9 166,086 - -0.3 166,087 + +0.7 166,087 + -0.3 166,087 + +0.8 166,087 + +0.3 166,087 + -0.4 166,087 + -1.3 166,088 - -1.0 166,088 - -0.2 166,088 - -1.3 166,088 - +1.2 166,088 - -1.0 166,088 - -0.8 166,088 - -0.2 166,088 - +0.8 166,088 - -0.4 166,088 - +0.2 166,101 + -1.3 166,101 + +1.6 166,101 + -0.4 166,102 - +0.1 166,123 + +0.7 166,124 - -2.2 166,129 + +0.2 166,129 + +0.7 166,209 + -0.1 166,226 + +1.5 166,235 - -1.7 166,295 + -2.7 166,295 + -1.2 166,295 + -0.8 166,296 - -1.5 166,296 - -0.8 166,296 - -0.1 166,296 - -0.8 166,301 + +0.4 166,301 + +1.0 166,301 + +0.2 166,301 + -2.3 166,301 + -0.9 166,301 + -0.4 166,302 - -1.2 166,302 - -0.5 166,302 - +0.9 166,302 - +0.8 166,302 - -2.4 166,302 - -0.5 166,302 - -2.0 166,302 - +0.2 166,302 - -1.1 166,303 + -1.8 166,399 + +1.1 166,399 + +0.2 166,400 - -1.9 166,622 + AO353_00755 0.25 -0.3 166,643 + AO353_00755 0.26 +0.7 166,643 + AO353_00755 0.26 +0.3 166,644 - AO353_00755 0.26 -0.7 166,644 - AO353_00755 0.26 +0.5 166,826 + AO353_00755 0.42 +0.9 166,827 - AO353_00755 0.42 +0.8 166,827 - AO353_00755 0.42 +0.9 166,827 - AO353_00755 0.42 -2.1 166,827 - AO353_00755 0.42 +1.1 166,827 - AO353_00755 0.42 -1.6
Or see this region's nucleotide sequence