Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4488.1

Experiment: Clovis xylem sap

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Clovis xylem sap
4,295,397	+				+1.5
4,295,397	+				+1.1
4,295,397	+				+2.3
4,295,398	-				+2.6
4,295,412	+				+1.8
4,295,412	+				+2.9
4,295,412	+				+2.5
4,295,412	+				+2.1
4,295,412	+				+2.7
4,295,412	+				+2.5
4,295,412	+				+3.0
4,295,413	-				+1.4
4,295,413	-				+0.4
4,295,413	-				+2.8
4,295,413	-				+2.6
4,295,413	-				+2.2
4,295,413	-				+2.0
4,295,413	-				+2.4
4,295,413	-				+2.4
4,295,416	+				+2.3
4,295,416	+				+1.5
4,295,416	+				+2.7
4,295,416	+				+2.5
4,295,416	+				+2.3
4,295,416	+				+2.3
4,295,416	+				+2.5
4,295,416	+				+2.5
4,295,416	+				+2.1
4,295,416	+				+2.7
4,295,416	+				+2.5
4,295,416	+				+2.5
4,295,416	+				+1.7
4,295,416	+				+1.8
4,295,417	-				+2.5
4,295,417	-				+1.7
4,295,417	-				+1.8
4,295,417	-				+1.9
4,295,417	-				+2.0
4,295,417	-				+2.2
4,295,417	-				+1.8
4,295,465	+				+0.5
4,295,465	+				-0.3
4,295,465	+				-1.8
4,295,465	+				+2.2
4,295,465	+				-0.7
4,295,465	+				-0.4
4,295,465	+				-0.7
4,295,465	+				+0.6
4,295,465	+				-1.1
4,295,466	-				+0.7
4,295,466	-				+0.4
4,295,466	-				+2.1
4,295,466	-				+0.5
4,295,466	-				+2.1
4,295,466	-				-1.3
4,295,466	-				-0.7
4,295,466	-				-0.4
4,295,466	-				+0.7
4,295,466	-				-0.0
4,295,466	-				+0.4
4,295,466	-				+0.5
4,295,466	-				+1.1
4,295,466	-				-1.2
4,295,466	-				+0.6
4,295,467	+				+0.5
4,295,467	+				-0.2
4,295,467	+				-0.3
4,295,467	+				+1.1
4,295,467	+				-0.1
4,295,467	+				+0.1
4,295,467	+				+0.7
4,295,467	+				+0.5
4,295,467	+				+1.1
4,295,467	+				-0.1
4,295,467	+				-1.5
4,295,467	+				+0.2
4,295,467	+				-0.5
4,295,467	+				+0.8
4,295,467	+				-0.3
4,295,467	+				+1.1
4,295,467	+				+0.6
4,295,467	+				+0.3
4,295,467	+				-0.6
4,295,467	+				-0.1
4,295,467	+				+1.8
4,295,468	-				-0.7
4,295,468	-				-1.1
4,295,468	-				+2.4
4,295,468	-				+1.1
4,295,468	-				-0.5
4,295,468	-				+0.5
4,295,468	-				+0.2
4,295,468	-				-0.6
4,295,468	-				-0.3
4,295,468	-				-0.8
4,295,468	-				-0.6
4,295,468	-				+0.3
4,295,468	-				-0.1
4,295,468	-				-0.2
4,295,468	-				+0.2
4,295,468	-				-0.9
4,295,468	-				-0.1
4,295,468	-				-0.0
4,295,468	-				+0.0
4,295,468	-				-0.1
4,295,468	-				-0.3
4,295,468	-				+0.2
4,295,468	-				-0.2
4,295,468	-				-0.6
4,295,468	-				-1.7
4,295,468	-				-1.3
4,295,468	-				-0.7
4,295,490	+				+0.6
4,295,490	+				-0.1
4,295,490	+				+0.9
4,295,490	+				+0.4
4,295,490	+				-0.4
4,295,490	+				+0.3
4,295,490	+				+1.1
4,295,491	-				+0.1
4,295,491	-				+1.7
4,295,491	-				+0.3
4,295,491	-				+0.7
4,295,491	-				-0.2
4,295,491	-				+0.2
4,295,491	-				-0.5
4,295,618	+				-0.7
4,295,618	+				-0.7
4,295,618	+				-0.7
4,295,618	+				+0.0
4,295,634	+				+0.1
4,297,352	+				+1.5
4,297,352	+				+0.4
4,297,353	-				-0.2
4,297,353	-				-0.6
4,297,366	-				+0.4
4,297,446	+		Xcc-8004.4489.1	0.16	+0.0
4,297,447	-		Xcc-8004.4489.1	0.16	-0.5
4,297,462	+		Xcc-8004.4489.1	0.21	-0.6
4,297,462	+		Xcc-8004.4489.1	0.21	-1.1
4,297,462	+		Xcc-8004.4489.1	0.21	+0.3
4,297,462	+		Xcc-8004.4489.1	0.21	-0.7
4,297,462	+		Xcc-8004.4489.1	0.21	+0.3
4,297,462	+		Xcc-8004.4489.1	0.21	-0.3
4,297,463	-		Xcc-8004.4489.1	0.21	-1.2
4,297,463	-		Xcc-8004.4489.1	0.21	-1.2
4,297,463	-		Xcc-8004.4489.1	0.21	+1.2
4,297,463	-		Xcc-8004.4489.1	0.21	+0.2
4,297,463	-		Xcc-8004.4489.1	0.21	+0.3
4,297,463	-		Xcc-8004.4489.1	0.21	-1.1
4,297,463	-		Xcc-8004.4489.1	0.21	+0.7
4,297,463	-		Xcc-8004.4489.1	0.21	-0.1
4,297,463	-		Xcc-8004.4489.1	0.21	+0.1
4,297,577	-		Xcc-8004.4489.1	0.54	+2.1
4,297,577	-		Xcc-8004.4489.1	0.54	+0.1
4,297,577	-		Xcc-8004.4489.1	0.54	+0.3
4,297,675	-		Xcc-8004.4489.1	0.82	+0.5
4,297,678	+		Xcc-8004.4489.1	0.83	-0.0
4,297,678	+		Xcc-8004.4489.1	0.83	+0.3
4,297,678	+		Xcc-8004.4489.1	0.83	-0.1
4,297,678	+		Xcc-8004.4489.1	0.83	+0.7
4,297,678	+		Xcc-8004.4489.1	0.83	-0.4
4,297,679	-		Xcc-8004.4489.1	0.83	+0.9
4,297,679	-		Xcc-8004.4489.1	0.83	+0.6
4,297,679	-		Xcc-8004.4489.1	0.83	-0.1
4,297,717	+				-0.5
4,297,718	-				-0.5
4,297,718	-				-0.1
4,297,718	-				+0.3
4,297,735	+				+0.1
4,297,735	+				+0.3
4,297,736	-				+0.5
4,297,736	-				+0.1
4,297,765	+				+0.5
4,297,765	+				+0.2
4,297,766	-				-0.6
4,297,766	-				+0.1
4,297,766	-				-0.3
4,297,882	+				+1.7
4,297,883	-				-0.9
4,297,883	-				-0.4
4,297,883	-				+0.6
4,297,885	+				+0.1
4,297,885	+				-2.8
4,297,885	+				-0.3
4,297,885	+				+0.1
4,297,885	+				-0.4
4,297,885	+				-0.3
4,297,885	+				+0.8
4,297,885	+				+0.1
4,297,885	+				+1.5
4,297,886	-				-0.5
4,297,886	-				+0.2
4,297,886	-				-0.1
4,297,886	-				-0.7
4,297,886	-				+0.9
4,297,886	-				+0.1
4,297,886	-				-0.3
4,297,886	-				+0.9
4,298,053	+		Xcc-8004.4490.1	0.24	+0.3
4,298,053	+		Xcc-8004.4490.1	0.24	+1.3
4,298,053	+		Xcc-8004.4490.1	0.24	+0.1
4,298,053	+		Xcc-8004.4490.1	0.24	-2.7
4,298,053	+		Xcc-8004.4490.1	0.24	-0.2
4,298,053	+		Xcc-8004.4490.1	0.24	+0.7
4,298,053	+		Xcc-8004.4490.1	0.24	+0.8
4,298,054	-		Xcc-8004.4490.1	0.24	-0.7
4,298,054	-		Xcc-8004.4490.1	0.24	-0.4
4,298,054	-		Xcc-8004.4490.1	0.24	-1.0
4,298,054	-		Xcc-8004.4490.1	0.24	-0.3
4,298,054	-		Xcc-8004.4490.1	0.24	+1.0
4,298,054	-		Xcc-8004.4490.1	0.24	+0.1
4,298,054	-		Xcc-8004.4490.1	0.24	+0.0
4,298,054	-		Xcc-8004.4490.1	0.24	-1.2
4,298,197	+		Xcc-8004.4490.1	0.37	+0.4
4,298,197	+		Xcc-8004.4490.1	0.37	+0.1
4,298,197	+		Xcc-8004.4490.1	0.37	-0.5
4,298,197	+		Xcc-8004.4490.1	0.37	-0.3
4,298,198	-		Xcc-8004.4490.1	0.37	+0.3