Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4022.1

Experiment: Clovis xylem sap

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4019.1 and Xcc-8004.4020.1 overlap by 4 nucleotidesXcc-8004.4020.1 and Xcc-8004.4021.1 are separated by 12 nucleotidesXcc-8004.4021.1 and Xcc-8004.4022.1 are separated by 15 nucleotidesXcc-8004.4022.1 and Xcc-8004.4023.1 overlap by 1 nucleotidesXcc-8004.4023.1 and Xcc-8004.4024.1 overlap by 1 nucleotides Xcc-8004.4019.1: Xcc-8004.4019.1 - Molybdenum cofactor biosynthesis protein MoaD, at 3,890,944 to 3,891,189 Xcc-8004.4019.1 Xcc-8004.4020.1: Xcc-8004.4020.1 - Molybdenum cofactor biosynthesis protein MoaC, at 3,891,186 to 3,891,695 Xcc-8004.4020.1 Xcc-8004.4021.1: Xcc-8004.4021.1 - FIG01210053: hypothetical protein, at 3,891,708 to 3,892,061 Xcc-8004.4021.1 Xcc-8004.4022.1: Xcc-8004.4022.1 - Molybdenum cofactor biosynthesis protein MoaA, at 3,892,077 to 3,893,108 Xcc-8004.4022.1 Xcc-8004.4023.1: Xcc-8004.4023.1 - FIG01209934: hypothetical protein, at 3,893,108 to 3,893,860 Xcc-8004.4023.1 Xcc-8004.4024.1: Xcc-8004.4024.1 - 3-deoxy-D-manno-octulosonic acid kinase (EC 2.7.1.-), at 3,893,860 to 3,894,609 Xcc-8004.4024.1 Position (kb) 3892 3893 3894Strain fitness (log2 ratio) -2 -1 0 1 2at 3891.086 kb on + strand, within Xcc-8004.4019.1at 3891.086 kb on + strand, within Xcc-8004.4019.1at 3891.087 kb on - strand, within Xcc-8004.4019.1at 3891.087 kb on - strand, within Xcc-8004.4019.1at 3891.087 kb on - strand, within Xcc-8004.4019.1at 3891.087 kb on - strand, within Xcc-8004.4019.1at 3891.165 kb on - strandat 3891.165 kb on - strandat 3891.283 kb on + strand, within Xcc-8004.4020.1at 3891.283 kb on + strand, within Xcc-8004.4020.1at 3891.283 kb on + strand, within Xcc-8004.4020.1at 3891.284 kb on - strand, within Xcc-8004.4020.1at 3891.284 kb on - strand, within Xcc-8004.4020.1at 3891.284 kb on - strand, within Xcc-8004.4020.1at 3891.345 kb on + strand, within Xcc-8004.4020.1at 3891.345 kb on + strand, within Xcc-8004.4020.1at 3891.346 kb on - strand, within Xcc-8004.4020.1at 3891.346 kb on - strand, within Xcc-8004.4020.1at 3891.346 kb on - strand, within Xcc-8004.4020.1at 3891.346 kb on - strand, within Xcc-8004.4020.1at 3891.346 kb on - strand, within Xcc-8004.4020.1at 3891.346 kb on - strand, within Xcc-8004.4020.1at 3891.895 kb on + strand, within Xcc-8004.4021.1at 3891.895 kb on + strand, within Xcc-8004.4021.1at 3891.895 kb on + strand, within Xcc-8004.4021.1at 3891.896 kb on - strand, within Xcc-8004.4021.1at 3891.949 kb on + strand, within Xcc-8004.4021.1at 3891.949 kb on + strand, within Xcc-8004.4021.1at 3891.949 kb on + strand, within Xcc-8004.4021.1at 3891.949 kb on + strand, within Xcc-8004.4021.1at 3891.949 kb on + strand, within Xcc-8004.4021.1at 3891.949 kb on + strand, within Xcc-8004.4021.1at 3891.950 kb on - strand, within Xcc-8004.4021.1at 3891.950 kb on - strand, within Xcc-8004.4021.1at 3891.950 kb on - strand, within Xcc-8004.4021.1at 3892.023 kb on + strand, within Xcc-8004.4021.1at 3892.023 kb on + strand, within Xcc-8004.4021.1at 3892.023 kb on + strand, within Xcc-8004.4021.1at 3892.023 kb on + strand, within Xcc-8004.4021.1at 3892.023 kb on + strand, within Xcc-8004.4021.1at 3892.023 kb on + strand, within Xcc-8004.4021.1at 3892.024 kb on - strand, within Xcc-8004.4021.1at 3892.024 kb on - strand, within Xcc-8004.4021.1at 3892.024 kb on - strand, within Xcc-8004.4021.1at 3892.024 kb on - strand, within Xcc-8004.4021.1at 3892.024 kb on - strand, within Xcc-8004.4021.1at 3892.024 kb on - strand, within Xcc-8004.4021.1at 3892.143 kb on - strandat 3892.143 kb on - strandat 3892.143 kb on - strandat 3892.143 kb on - strandat 3892.144 kb on + strandat 3892.144 kb on + strandat 3892.145 kb on - strandat 3892.255 kb on + strand, within Xcc-8004.4022.1at 3892.255 kb on + strand, within Xcc-8004.4022.1at 3892.255 kb on + strand, within Xcc-8004.4022.1at 3892.255 kb on + strand, within Xcc-8004.4022.1at 3892.255 kb on + strand, within Xcc-8004.4022.1at 3892.255 kb on + strand, within Xcc-8004.4022.1at 3892.255 kb on + strand, within Xcc-8004.4022.1at 3892.255 kb on + strand, within Xcc-8004.4022.1at 3892.255 kb on + strand, within Xcc-8004.4022.1at 3892.255 kb on + strand, within Xcc-8004.4022.1at 3892.255 kb on + strand, within Xcc-8004.4022.1at 3892.255 kb on + strand, within Xcc-8004.4022.1at 3892.255 kb on + strand, within Xcc-8004.4022.1at 3892.256 kb on - strand, within Xcc-8004.4022.1at 3892.256 kb on - strand, within Xcc-8004.4022.1at 3892.256 kb on - strand, within Xcc-8004.4022.1at 3892.256 kb on - strand, within Xcc-8004.4022.1at 3892.256 kb on - strand, within Xcc-8004.4022.1at 3892.256 kb on - strand, within Xcc-8004.4022.1at 3892.256 kb on - strand, within Xcc-8004.4022.1at 3892.256 kb on - strand, within Xcc-8004.4022.1at 3892.256 kb on - strand, within Xcc-8004.4022.1at 3892.256 kb on - strand, within Xcc-8004.4022.1at 3892.384 kb on + strand, within Xcc-8004.4022.1at 3892.384 kb on + strand, within Xcc-8004.4022.1at 3892.384 kb on + strand, within Xcc-8004.4022.1at 3892.384 kb on + strand, within Xcc-8004.4022.1at 3892.384 kb on + strand, within Xcc-8004.4022.1at 3892.384 kb on + strand, within Xcc-8004.4022.1at 3892.384 kb on + strand, within Xcc-8004.4022.1at 3892.384 kb on + strand, within Xcc-8004.4022.1at 3892.384 kb on + strand, within Xcc-8004.4022.1at 3892.385 kb on - strand, within Xcc-8004.4022.1at 3892.385 kb on - strand, within Xcc-8004.4022.1at 3892.385 kb on - strand, within Xcc-8004.4022.1at 3892.385 kb on - strand, within Xcc-8004.4022.1at 3892.385 kb on - strand, within Xcc-8004.4022.1at 3892.385 kb on - strand, within Xcc-8004.4022.1at 3892.385 kb on - strand, within Xcc-8004.4022.1at 3892.385 kb on - strand, within Xcc-8004.4022.1at 3892.385 kb on - strand, within Xcc-8004.4022.1at 3892.961 kb on - strand, within Xcc-8004.4022.1at 3892.993 kb on + strand, within Xcc-8004.4022.1at 3893.864 kb on + strandat 3893.865 kb on - strandat 3893.889 kb on - strandat 3893.909 kb on + strandat 3893.909 kb on + strandat 3893.910 kb on - strandat 3894.010 kb on - strand, within Xcc-8004.4024.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Clovis xylem sap
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3,891,086 + Xcc-8004.4019.1 0.58 +0.5
3,891,086 + Xcc-8004.4019.1 0.58 +0.5
3,891,087 - Xcc-8004.4019.1 0.58 +0.9
3,891,087 - Xcc-8004.4019.1 0.58 +1.0
3,891,087 - Xcc-8004.4019.1 0.58 +0.3
3,891,087 - Xcc-8004.4019.1 0.58 -0.2
3,891,165 - -0.6
3,891,165 - +0.2
3,891,283 + Xcc-8004.4020.1 0.19 -1.8
3,891,283 + Xcc-8004.4020.1 0.19 +2.0
3,891,283 + Xcc-8004.4020.1 0.19 -0.7
3,891,284 - Xcc-8004.4020.1 0.19 -1.1
3,891,284 - Xcc-8004.4020.1 0.19 +0.6
3,891,284 - Xcc-8004.4020.1 0.19 -0.5
3,891,345 + Xcc-8004.4020.1 0.31 -0.7
3,891,345 + Xcc-8004.4020.1 0.31 -0.7
3,891,346 - Xcc-8004.4020.1 0.31 -1.1
3,891,346 - Xcc-8004.4020.1 0.31 +1.8
3,891,346 - Xcc-8004.4020.1 0.31 -0.0
3,891,346 - Xcc-8004.4020.1 0.31 -0.3
3,891,346 - Xcc-8004.4020.1 0.31 -0.6
3,891,346 - Xcc-8004.4020.1 0.31 +0.6
3,891,895 + Xcc-8004.4021.1 0.53 +0.1
3,891,895 + Xcc-8004.4021.1 0.53 +0.5
3,891,895 + Xcc-8004.4021.1 0.53 +0.5
3,891,896 - Xcc-8004.4021.1 0.53 -0.5
3,891,949 + Xcc-8004.4021.1 0.68 +0.2
3,891,949 + Xcc-8004.4021.1 0.68 -0.5
3,891,949 + Xcc-8004.4021.1 0.68 -0.9
3,891,949 + Xcc-8004.4021.1 0.68 -0.3
3,891,949 + Xcc-8004.4021.1 0.68 -2.0
3,891,949 + Xcc-8004.4021.1 0.68 -0.1
3,891,950 - Xcc-8004.4021.1 0.68 -0.8
3,891,950 - Xcc-8004.4021.1 0.68 -0.0
3,891,950 - Xcc-8004.4021.1 0.68 +0.2
3,892,023 + Xcc-8004.4021.1 0.89 +0.2
3,892,023 + Xcc-8004.4021.1 0.89 +0.5
3,892,023 + Xcc-8004.4021.1 0.89 -1.4
3,892,023 + Xcc-8004.4021.1 0.89 -0.7
3,892,023 + Xcc-8004.4021.1 0.89 +0.7
3,892,023 + Xcc-8004.4021.1 0.89 +0.5
3,892,024 - Xcc-8004.4021.1 0.89 -0.0
3,892,024 - Xcc-8004.4021.1 0.89 +1.6
3,892,024 - Xcc-8004.4021.1 0.89 +0.9
3,892,024 - Xcc-8004.4021.1 0.89 -0.7
3,892,024 - Xcc-8004.4021.1 0.89 -1.3
3,892,024 - Xcc-8004.4021.1 0.89 -0.1
3,892,143 - -0.4
3,892,143 - +0.0
3,892,143 - -0.1
3,892,143 - -1.4
3,892,144 + +0.0
3,892,144 + +1.0
3,892,145 - -0.8
3,892,255 + Xcc-8004.4022.1 0.17 -0.6
3,892,255 + Xcc-8004.4022.1 0.17 +0.2
3,892,255 + Xcc-8004.4022.1 0.17 +0.2
3,892,255 + Xcc-8004.4022.1 0.17 -0.2
3,892,255 + Xcc-8004.4022.1 0.17 -0.1
3,892,255 + Xcc-8004.4022.1 0.17 +0.2
3,892,255 + Xcc-8004.4022.1 0.17 +1.6
3,892,255 + Xcc-8004.4022.1 0.17 -0.8
3,892,255 + Xcc-8004.4022.1 0.17 -1.1
3,892,255 + Xcc-8004.4022.1 0.17 +0.5
3,892,255 + Xcc-8004.4022.1 0.17 +0.8
3,892,255 + Xcc-8004.4022.1 0.17 +0.6
3,892,255 + Xcc-8004.4022.1 0.17 +0.2
3,892,256 - Xcc-8004.4022.1 0.17 -1.1
3,892,256 - Xcc-8004.4022.1 0.17 +0.6
3,892,256 - Xcc-8004.4022.1 0.17 -1.1
3,892,256 - Xcc-8004.4022.1 0.17 -0.3
3,892,256 - Xcc-8004.4022.1 0.17 +1.2
3,892,256 - Xcc-8004.4022.1 0.17 +0.5
3,892,256 - Xcc-8004.4022.1 0.17 +0.1
3,892,256 - Xcc-8004.4022.1 0.17 -0.3
3,892,256 - Xcc-8004.4022.1 0.17 +0.8
3,892,256 - Xcc-8004.4022.1 0.17 +0.6
3,892,384 + Xcc-8004.4022.1 0.30 -0.1
3,892,384 + Xcc-8004.4022.1 0.30 +0.1
3,892,384 + Xcc-8004.4022.1 0.30 -0.7
3,892,384 + Xcc-8004.4022.1 0.30 -0.3
3,892,384 + Xcc-8004.4022.1 0.30 +0.3
3,892,384 + Xcc-8004.4022.1 0.30 -0.1
3,892,384 + Xcc-8004.4022.1 0.30 +0.2
3,892,384 + Xcc-8004.4022.1 0.30 -0.2
3,892,384 + Xcc-8004.4022.1 0.30 -1.7
3,892,385 - Xcc-8004.4022.1 0.30 -1.1
3,892,385 - Xcc-8004.4022.1 0.30 +1.5
3,892,385 - Xcc-8004.4022.1 0.30 +0.5
3,892,385 - Xcc-8004.4022.1 0.30 -0.1
3,892,385 - Xcc-8004.4022.1 0.30 +1.8
3,892,385 - Xcc-8004.4022.1 0.30 -1.1
3,892,385 - Xcc-8004.4022.1 0.30 -0.4
3,892,385 - Xcc-8004.4022.1 0.30 +0.8
3,892,385 - Xcc-8004.4022.1 0.30 -1.0
3,892,961 - Xcc-8004.4022.1 0.86 +0.4
3,892,993 + Xcc-8004.4022.1 0.89 -0.1
3,893,864 + +0.7
3,893,865 - -0.4
3,893,889 - +0.1
3,893,909 + -0.1
3,893,909 + -0.9
3,893,910 - -1.0
3,894,010 - Xcc-8004.4024.1 0.20 +0.2

Or see this region's nucleotide sequence