Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.217.1

Experiment: Clovis xylem sap

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.216.1 and Xcc-8004.217.1 are separated by 19 nucleotidesXcc-8004.217.1 and Xcc-8004.218.1 overlap by 11 nucleotidesXcc-8004.218.1 and Xcc-8004.219.1 are separated by 60 nucleotides Xcc-8004.216.1: Xcc-8004.216.1 - ABC transporter, ATP-binding protein, at 213,066 to 214,013 Xcc-8004.216.1 Xcc-8004.217.1: Xcc-8004.217.1 - Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1), at 214,033 to 215,262 Xcc-8004.217.1 Xcc-8004.218.1: Xcc-8004.218.1 - FIG01210778: hypothetical protein, at 215,252 to 215,644 Xcc-8004.218.1 Xcc-8004.219.1: Xcc-8004.219.1 - L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1), at 215,705 to 216,442 Xcc-8004.219.1 Position (kb) 214 215 216Strain fitness (log2 ratio) -2 -1 0 1 2at 213.067 kb on + strandat 213.393 kb on + strand, within Xcc-8004.216.1at 213.427 kb on + strand, within Xcc-8004.216.1at 213.427 kb on + strand, within Xcc-8004.216.1at 213.428 kb on - strand, within Xcc-8004.216.1at 213.526 kb on + strand, within Xcc-8004.216.1at 213.526 kb on + strand, within Xcc-8004.216.1at 213.526 kb on + strand, within Xcc-8004.216.1at 213.526 kb on + strand, within Xcc-8004.216.1at 213.526 kb on + strand, within Xcc-8004.216.1at 213.526 kb on + strand, within Xcc-8004.216.1at 213.526 kb on + strand, within Xcc-8004.216.1at 213.526 kb on + strand, within Xcc-8004.216.1at 213.527 kb on - strand, within Xcc-8004.216.1at 213.527 kb on - strand, within Xcc-8004.216.1at 213.527 kb on - strand, within Xcc-8004.216.1at 213.527 kb on - strand, within Xcc-8004.216.1at 213.527 kb on - strand, within Xcc-8004.216.1at 213.703 kb on + strand, within Xcc-8004.216.1at 213.704 kb on - strand, within Xcc-8004.216.1at 213.704 kb on - strand, within Xcc-8004.216.1at 213.951 kb on + strandat 213.951 kb on + strandat 213.951 kb on + strandat 213.952 kb on - strandat 213.952 kb on - strandat 213.952 kb on - strandat 213.959 kb on + strandat 213.959 kb on + strandat 213.959 kb on + strandat 213.959 kb on + strandat 213.959 kb on + strandat 213.959 kb on + strandat 213.960 kb on - strandat 213.960 kb on - strandat 213.960 kb on - strandat 213.960 kb on - strandat 213.960 kb on - strandat 213.960 kb on - strandat 213.971 kb on + strandat 213.971 kb on + strandat 213.972 kb on - strandat 213.972 kb on - strandat 213.972 kb on - strandat 213.972 kb on - strandat 214.019 kb on + strandat 214.174 kb on + strand, within Xcc-8004.217.1at 214.174 kb on + strand, within Xcc-8004.217.1at 214.174 kb on + strand, within Xcc-8004.217.1at 214.174 kb on + strand, within Xcc-8004.217.1at 214.174 kb on + strand, within Xcc-8004.217.1at 214.174 kb on + strand, within Xcc-8004.217.1at 214.174 kb on + strand, within Xcc-8004.217.1at 214.174 kb on + strand, within Xcc-8004.217.1at 214.174 kb on + strand, within Xcc-8004.217.1at 214.174 kb on + strand, within Xcc-8004.217.1at 214.174 kb on + strand, within Xcc-8004.217.1at 214.175 kb on - strand, within Xcc-8004.217.1at 214.175 kb on - strand, within Xcc-8004.217.1at 214.175 kb on - strand, within Xcc-8004.217.1at 214.175 kb on - strand, within Xcc-8004.217.1at 214.175 kb on - strand, within Xcc-8004.217.1at 214.175 kb on - strand, within Xcc-8004.217.1at 214.175 kb on - strand, within Xcc-8004.217.1at 214.175 kb on - strand, within Xcc-8004.217.1at 214.175 kb on - strand, within Xcc-8004.217.1at 214.388 kb on - strand, within Xcc-8004.217.1at 214.426 kb on + strand, within Xcc-8004.217.1at 214.426 kb on + strand, within Xcc-8004.217.1at 214.426 kb on + strand, within Xcc-8004.217.1at 214.468 kb on + strand, within Xcc-8004.217.1at 214.468 kb on + strand, within Xcc-8004.217.1at 214.468 kb on + strand, within Xcc-8004.217.1at 214.468 kb on + strand, within Xcc-8004.217.1at 214.469 kb on - strand, within Xcc-8004.217.1at 214.469 kb on - strand, within Xcc-8004.217.1at 214.539 kb on + strand, within Xcc-8004.217.1at 214.622 kb on - strand, within Xcc-8004.217.1at 214.912 kb on + strand, within Xcc-8004.217.1at 214.913 kb on - strand, within Xcc-8004.217.1at 215.102 kb on - strand, within Xcc-8004.217.1at 215.102 kb on - strand, within Xcc-8004.217.1at 215.221 kb on + strandat 215.222 kb on - strandat 215.222 kb on - strandat 215.222 kb on - strandat 215.242 kb on + strandat 215.243 kb on - strandat 215.260 kb on + strandat 215.390 kb on + strand, within Xcc-8004.218.1at 215.390 kb on + strand, within Xcc-8004.218.1at 215.390 kb on + strand, within Xcc-8004.218.1at 215.390 kb on + strand, within Xcc-8004.218.1at 215.390 kb on + strand, within Xcc-8004.218.1at 215.390 kb on + strand, within Xcc-8004.218.1at 215.390 kb on + strand, within Xcc-8004.218.1at 215.390 kb on + strand, within Xcc-8004.218.1at 215.390 kb on + strand, within Xcc-8004.218.1at 215.391 kb on - strand, within Xcc-8004.218.1at 215.391 kb on - strand, within Xcc-8004.218.1at 215.441 kb on + strand, within Xcc-8004.218.1at 215.441 kb on + strand, within Xcc-8004.218.1at 215.442 kb on - strand, within Xcc-8004.218.1at 215.442 kb on - strand, within Xcc-8004.218.1at 215.442 kb on - strand, within Xcc-8004.218.1at 215.442 kb on - strand, within Xcc-8004.218.1at 215.442 kb on - strand, within Xcc-8004.218.1at 215.442 kb on - strand, within Xcc-8004.218.1at 215.442 kb on - strand, within Xcc-8004.218.1at 215.459 kb on + strand, within Xcc-8004.218.1at 215.459 kb on + strand, within Xcc-8004.218.1at 215.459 kb on + strand, within Xcc-8004.218.1at 215.459 kb on + strand, within Xcc-8004.218.1at 215.460 kb on - strand, within Xcc-8004.218.1at 215.460 kb on - strand, within Xcc-8004.218.1at 215.460 kb on - strand, within Xcc-8004.218.1at 215.460 kb on - strand, within Xcc-8004.218.1at 215.460 kb on - strand, within Xcc-8004.218.1at 215.606 kb on + strandat 215.606 kb on + strandat 215.607 kb on - strandat 215.607 kb on - strandat 215.607 kb on - strandat 215.607 kb on - strandat 215.607 kb on - strandat 215.939 kb on + strand, within Xcc-8004.219.1at 215.939 kb on + strand, within Xcc-8004.219.1at 215.939 kb on + strand, within Xcc-8004.219.1at 215.940 kb on - strand, within Xcc-8004.219.1at 215.940 kb on - strand, within Xcc-8004.219.1at 215.940 kb on - strand, within Xcc-8004.219.1at 215.940 kb on - strand, within Xcc-8004.219.1at 215.940 kb on - strand, within Xcc-8004.219.1at 216.031 kb on + strand, within Xcc-8004.219.1at 216.032 kb on - strand, within Xcc-8004.219.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Clovis xylem sap
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213,067 + +0.0
213,393 + Xcc-8004.216.1 0.34 +0.8
213,427 + Xcc-8004.216.1 0.38 +1.0
213,427 + Xcc-8004.216.1 0.38 +0.2
213,428 - Xcc-8004.216.1 0.38 -0.2
213,526 + Xcc-8004.216.1 0.49 -0.9
213,526 + Xcc-8004.216.1 0.49 -2.0
213,526 + Xcc-8004.216.1 0.49 -0.7
213,526 + Xcc-8004.216.1 0.49 +0.6
213,526 + Xcc-8004.216.1 0.49 +1.4
213,526 + Xcc-8004.216.1 0.49 +0.5
213,526 + Xcc-8004.216.1 0.49 +0.3
213,526 + Xcc-8004.216.1 0.49 +1.5
213,527 - Xcc-8004.216.1 0.49 -1.2
213,527 - Xcc-8004.216.1 0.49 +0.9
213,527 - Xcc-8004.216.1 0.49 +0.9
213,527 - Xcc-8004.216.1 0.49 -0.1
213,527 - Xcc-8004.216.1 0.49 -0.9
213,703 + Xcc-8004.216.1 0.67 +0.2
213,704 - Xcc-8004.216.1 0.67 -1.2
213,704 - Xcc-8004.216.1 0.67 -0.1
213,951 + +0.2
213,951 + -0.9
213,951 + +0.2
213,952 - +1.6
213,952 - -1.5
213,952 - -1.6
213,959 + +2.2
213,959 + +0.2
213,959 + +0.3
213,959 + +0.9
213,959 + +0.8
213,959 + +0.2
213,960 - -0.2
213,960 - +0.4
213,960 - -0.1
213,960 - +0.2
213,960 - +0.1
213,960 - +1.8
213,971 + +0.2
213,971 + -0.1
213,972 - +0.4
213,972 - -1.7
213,972 - -0.2
213,972 - +0.7
214,019 + +0.1
214,174 + Xcc-8004.217.1 0.11 -0.7
214,174 + Xcc-8004.217.1 0.11 -1.8
214,174 + Xcc-8004.217.1 0.11 -0.2
214,174 + Xcc-8004.217.1 0.11 -1.2
214,174 + Xcc-8004.217.1 0.11 -1.0
214,174 + Xcc-8004.217.1 0.11 +0.1
214,174 + Xcc-8004.217.1 0.11 -0.2
214,174 + Xcc-8004.217.1 0.11 -0.1
214,174 + Xcc-8004.217.1 0.11 +0.2
214,174 + Xcc-8004.217.1 0.11 +0.4
214,174 + Xcc-8004.217.1 0.11 -0.8
214,175 - Xcc-8004.217.1 0.12 -0.6
214,175 - Xcc-8004.217.1 0.12 +0.0
214,175 - Xcc-8004.217.1 0.12 -0.5
214,175 - Xcc-8004.217.1 0.12 -0.6
214,175 - Xcc-8004.217.1 0.12 +0.5
214,175 - Xcc-8004.217.1 0.12 -0.2
214,175 - Xcc-8004.217.1 0.12 +1.0
214,175 - Xcc-8004.217.1 0.12 -0.2
214,175 - Xcc-8004.217.1 0.12 -1.6
214,388 - Xcc-8004.217.1 0.29 +1.2
214,426 + Xcc-8004.217.1 0.32 -1.2
214,426 + Xcc-8004.217.1 0.32 -1.3
214,426 + Xcc-8004.217.1 0.32 +0.2
214,468 + Xcc-8004.217.1 0.35 -0.5
214,468 + Xcc-8004.217.1 0.35 -0.2
214,468 + Xcc-8004.217.1 0.35 +0.2
214,468 + Xcc-8004.217.1 0.35 +0.3
214,469 - Xcc-8004.217.1 0.35 +0.6
214,469 - Xcc-8004.217.1 0.35 +0.2
214,539 + Xcc-8004.217.1 0.41 +0.6
214,622 - Xcc-8004.217.1 0.48 +1.6
214,912 + Xcc-8004.217.1 0.71 +0.2
214,913 - Xcc-8004.217.1 0.72 -1.6
215,102 - Xcc-8004.217.1 0.87 -1.8
215,102 - Xcc-8004.217.1 0.87 +0.2
215,221 + -1.1
215,222 - +0.2
215,222 - -0.9
215,222 - +0.9
215,242 + -0.5
215,243 - -0.2
215,260 + -1.3
215,390 + Xcc-8004.218.1 0.35 +0.4
215,390 + Xcc-8004.218.1 0.35 -0.6
215,390 + Xcc-8004.218.1 0.35 -0.1
215,390 + Xcc-8004.218.1 0.35 +0.5
215,390 + Xcc-8004.218.1 0.35 -0.9
215,390 + Xcc-8004.218.1 0.35 -1.0
215,390 + Xcc-8004.218.1 0.35 +1.4
215,390 + Xcc-8004.218.1 0.35 +0.2
215,390 + Xcc-8004.218.1 0.35 +0.1
215,391 - Xcc-8004.218.1 0.35 +0.6
215,391 - Xcc-8004.218.1 0.35 +0.0
215,441 + Xcc-8004.218.1 0.48 -1.2
215,441 + Xcc-8004.218.1 0.48 +1.9
215,442 - Xcc-8004.218.1 0.48 +0.1
215,442 - Xcc-8004.218.1 0.48 -1.2
215,442 - Xcc-8004.218.1 0.48 -0.1
215,442 - Xcc-8004.218.1 0.48 +0.2
215,442 - Xcc-8004.218.1 0.48 +0.8
215,442 - Xcc-8004.218.1 0.48 +0.9
215,442 - Xcc-8004.218.1 0.48 -0.4
215,459 + Xcc-8004.218.1 0.53 -1.2
215,459 + Xcc-8004.218.1 0.53 +0.3
215,459 + Xcc-8004.218.1 0.53 -0.2
215,459 + Xcc-8004.218.1 0.53 +0.6
215,460 - Xcc-8004.218.1 0.53 +0.1
215,460 - Xcc-8004.218.1 0.53 -0.6
215,460 - Xcc-8004.218.1 0.53 -0.6
215,460 - Xcc-8004.218.1 0.53 -0.8
215,460 - Xcc-8004.218.1 0.53 -0.1
215,606 + +0.8
215,606 + +0.1
215,607 - -0.6
215,607 - +0.6
215,607 - +0.1
215,607 - -0.9
215,607 - +0.2
215,939 + Xcc-8004.219.1 0.32 -0.6
215,939 + Xcc-8004.219.1 0.32 +1.6
215,939 + Xcc-8004.219.1 0.32 +0.0
215,940 - Xcc-8004.219.1 0.32 +1.9
215,940 - Xcc-8004.219.1 0.32 -0.2
215,940 - Xcc-8004.219.1 0.32 +0.6
215,940 - Xcc-8004.219.1 0.32 -1.4
215,940 - Xcc-8004.219.1 0.32 -0.7
216,031 + Xcc-8004.219.1 0.44 -0.0
216,032 - Xcc-8004.219.1 0.44 +1.6

Or see this region's nucleotide sequence