Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.193.1

Experiment: Clovis xylem sap

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.189.1 and Xcc-8004.192.1 are separated by 381 nucleotidesXcc-8004.192.1 and Xcc-8004.193.1 overlap by 11 nucleotidesXcc-8004.193.1 and Xcc-8004.194.1 overlap by 4 nucleotides Xcc-8004.189.1: Xcc-8004.189.1 - Mobile element protein, at 184,341 to 184,532 Xcc-8004.189.1 Xcc-8004.192.1: Xcc-8004.192.1 - putative; ORF located using Glimmer/Genemark, at 184,914 to 185,408 Xcc-8004.192.1 Xcc-8004.193.1: Xcc-8004.193.1 - putative; ORF located using Glimmer/Genemark, at 185,398 to 185,670 Xcc-8004.193.1 Xcc-8004.194.1: Xcc-8004.194.1 - putative iron-regulated membrane protein, at 185,667 to 187,202 Xcc-8004.194.1 Position (kb) 185 186Strain fitness (log2 ratio) -2 -1 0 1 2 3at 184.427 kb on - strand, within Xcc-8004.189.1at 184.603 kb on + strandat 184.616 kb on - strandat 184.622 kb on + strandat 184.623 kb on - strandat 184.623 kb on - strandat 184.670 kb on + strandat 184.670 kb on + strandat 184.671 kb on - strandat 184.671 kb on - strandat 184.671 kb on - strandat 184.678 kb on + strandat 184.678 kb on + strandat 184.678 kb on + strandat 184.678 kb on + strandat 184.679 kb on - strandat 184.890 kb on + strandat 185.066 kb on + strand, within Xcc-8004.192.1at 185.066 kb on + strand, within Xcc-8004.192.1at 185.066 kb on + strand, within Xcc-8004.192.1at 185.066 kb on + strand, within Xcc-8004.192.1at 185.066 kb on + strand, within Xcc-8004.192.1at 185.067 kb on - strand, within Xcc-8004.192.1at 185.067 kb on - strand, within Xcc-8004.192.1at 185.067 kb on - strand, within Xcc-8004.192.1at 185.067 kb on - strand, within Xcc-8004.192.1at 185.074 kb on + strand, within Xcc-8004.192.1at 185.075 kb on - strand, within Xcc-8004.192.1at 185.114 kb on + strand, within Xcc-8004.192.1at 185.114 kb on + strand, within Xcc-8004.192.1at 185.114 kb on + strand, within Xcc-8004.192.1at 185.114 kb on + strand, within Xcc-8004.192.1at 185.133 kb on + strand, within Xcc-8004.192.1at 185.170 kb on - strand, within Xcc-8004.192.1at 185.170 kb on - strand, within Xcc-8004.192.1at 185.288 kb on + strand, within Xcc-8004.192.1at 185.406 kb on + strandat 185.406 kb on + strandat 185.406 kb on + strandat 185.406 kb on + strandat 185.493 kb on + strand, within Xcc-8004.193.1at 185.493 kb on + strand, within Xcc-8004.193.1at 185.493 kb on + strand, within Xcc-8004.193.1at 185.493 kb on + strand, within Xcc-8004.193.1at 185.493 kb on + strand, within Xcc-8004.193.1at 185.493 kb on + strand, within Xcc-8004.193.1at 185.497 kb on + strand, within Xcc-8004.193.1at 185.497 kb on + strand, within Xcc-8004.193.1at 185.497 kb on + strand, within Xcc-8004.193.1at 185.497 kb on + strand, within Xcc-8004.193.1at 185.497 kb on + strand, within Xcc-8004.193.1at 185.497 kb on + strand, within Xcc-8004.193.1at 185.497 kb on + strand, within Xcc-8004.193.1at 185.498 kb on - strand, within Xcc-8004.193.1at 185.498 kb on - strand, within Xcc-8004.193.1at 185.498 kb on - strand, within Xcc-8004.193.1at 185.498 kb on - strand, within Xcc-8004.193.1at 185.498 kb on - strand, within Xcc-8004.193.1at 185.499 kb on + strand, within Xcc-8004.193.1at 185.499 kb on + strand, within Xcc-8004.193.1at 185.499 kb on + strand, within Xcc-8004.193.1at 185.500 kb on - strand, within Xcc-8004.193.1at 185.500 kb on - strand, within Xcc-8004.193.1at 185.500 kb on - strand, within Xcc-8004.193.1at 185.617 kb on + strand, within Xcc-8004.193.1at 185.618 kb on - strand, within Xcc-8004.193.1at 185.618 kb on - strand, within Xcc-8004.193.1at 185.751 kb on + strandat 185.751 kb on + strandat 185.751 kb on + strandat 185.752 kb on - strandat 185.946 kb on + strand, within Xcc-8004.194.1at 185.946 kb on + strand, within Xcc-8004.194.1at 185.947 kb on - strand, within Xcc-8004.194.1at 185.947 kb on - strand, within Xcc-8004.194.1at 185.947 kb on - strand, within Xcc-8004.194.1at 185.991 kb on + strand, within Xcc-8004.194.1at 186.057 kb on + strand, within Xcc-8004.194.1at 186.102 kb on + strand, within Xcc-8004.194.1at 186.102 kb on + strand, within Xcc-8004.194.1at 186.102 kb on + strand, within Xcc-8004.194.1at 186.102 kb on + strand, within Xcc-8004.194.1at 186.102 kb on + strand, within Xcc-8004.194.1at 186.103 kb on - strand, within Xcc-8004.194.1at 186.103 kb on - strand, within Xcc-8004.194.1at 186.103 kb on - strand, within Xcc-8004.194.1at 186.103 kb on - strand, within Xcc-8004.194.1at 186.499 kb on - strand, within Xcc-8004.194.1at 186.499 kb on - strand, within Xcc-8004.194.1at 186.537 kb on + strand, within Xcc-8004.194.1at 186.537 kb on + strand, within Xcc-8004.194.1at 186.538 kb on - strand, within Xcc-8004.194.1at 186.538 kb on - strand, within Xcc-8004.194.1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Clovis xylem sap
remove
184,427 - Xcc-8004.189.1 0.45 +0.8
184,603 + +1.6
184,616 - +2.9
184,622 + -0.5
184,623 - -0.6
184,623 - -0.2
184,670 + +0.3
184,670 + -0.5
184,671 - -1.2
184,671 - -0.4
184,671 - -1.3
184,678 + -0.4
184,678 + -1.3
184,678 + +0.6
184,678 + +0.8
184,679 - +0.6
184,890 + +0.6
185,066 + Xcc-8004.192.1 0.31 +0.0
185,066 + Xcc-8004.192.1 0.31 -0.2
185,066 + Xcc-8004.192.1 0.31 +0.2
185,066 + Xcc-8004.192.1 0.31 -0.6
185,066 + Xcc-8004.192.1 0.31 -0.5
185,067 - Xcc-8004.192.1 0.31 -0.2
185,067 - Xcc-8004.192.1 0.31 +0.2
185,067 - Xcc-8004.192.1 0.31 -0.2
185,067 - Xcc-8004.192.1 0.31 +0.2
185,074 + Xcc-8004.192.1 0.32 +0.8
185,075 - Xcc-8004.192.1 0.33 -0.0
185,114 + Xcc-8004.192.1 0.40 +0.6
185,114 + Xcc-8004.192.1 0.40 -0.2
185,114 + Xcc-8004.192.1 0.40 +0.4
185,114 + Xcc-8004.192.1 0.40 -0.2
185,133 + Xcc-8004.192.1 0.44 -0.4
185,170 - Xcc-8004.192.1 0.52 +0.3
185,170 - Xcc-8004.192.1 0.52 +0.4
185,288 + Xcc-8004.192.1 0.76 +0.1
185,406 + +0.4
185,406 + -0.2
185,406 + -0.2
185,406 + +0.6
185,493 + Xcc-8004.193.1 0.35 -0.8
185,493 + Xcc-8004.193.1 0.35 +0.9
185,493 + Xcc-8004.193.1 0.35 +0.4
185,493 + Xcc-8004.193.1 0.35 -0.5
185,493 + Xcc-8004.193.1 0.35 -0.6
185,493 + Xcc-8004.193.1 0.35 -0.2
185,497 + Xcc-8004.193.1 0.36 -0.8
185,497 + Xcc-8004.193.1 0.36 -0.3
185,497 + Xcc-8004.193.1 0.36 -0.8
185,497 + Xcc-8004.193.1 0.36 -0.1
185,497 + Xcc-8004.193.1 0.36 -1.2
185,497 + Xcc-8004.193.1 0.36 -0.9
185,497 + Xcc-8004.193.1 0.36 +0.2
185,498 - Xcc-8004.193.1 0.37 +0.3
185,498 - Xcc-8004.193.1 0.37 -1.3
185,498 - Xcc-8004.193.1 0.37 +0.3
185,498 - Xcc-8004.193.1 0.37 +0.4
185,498 - Xcc-8004.193.1 0.37 -0.7
185,499 + Xcc-8004.193.1 0.37 +0.4
185,499 + Xcc-8004.193.1 0.37 -0.7
185,499 + Xcc-8004.193.1 0.37 -0.5
185,500 - Xcc-8004.193.1 0.37 -0.6
185,500 - Xcc-8004.193.1 0.37 +0.8
185,500 - Xcc-8004.193.1 0.37 -0.1
185,617 + Xcc-8004.193.1 0.80 -0.5
185,618 - Xcc-8004.193.1 0.81 -0.5
185,618 - Xcc-8004.193.1 0.81 +0.1
185,751 + -0.4
185,751 + +0.4
185,751 + +0.6
185,752 - -0.4
185,946 + Xcc-8004.194.1 0.18 -0.9
185,946 + Xcc-8004.194.1 0.18 -0.9
185,947 - Xcc-8004.194.1 0.18 -0.6
185,947 - Xcc-8004.194.1 0.18 -0.5
185,947 - Xcc-8004.194.1 0.18 -1.2
185,991 + Xcc-8004.194.1 0.21 -0.4
186,057 + Xcc-8004.194.1 0.25 +1.7
186,102 + Xcc-8004.194.1 0.28 -1.2
186,102 + Xcc-8004.194.1 0.28 -0.9
186,102 + Xcc-8004.194.1 0.28 +1.9
186,102 + Xcc-8004.194.1 0.28 -0.3
186,102 + Xcc-8004.194.1 0.28 +0.7
186,103 - Xcc-8004.194.1 0.28 -0.2
186,103 - Xcc-8004.194.1 0.28 -1.1
186,103 - Xcc-8004.194.1 0.28 -0.6
186,103 - Xcc-8004.194.1 0.28 -0.4
186,499 - Xcc-8004.194.1 0.54 +0.0
186,499 - Xcc-8004.194.1 0.54 -1.8
186,537 + Xcc-8004.194.1 0.57 +1.6
186,537 + Xcc-8004.194.1 0.57 -0.2
186,538 - Xcc-8004.194.1 0.57 -1.2
186,538 - Xcc-8004.194.1 0.57 -1.0

Or see this region's nucleotide sequence