Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_761

Experiment: copper (II) chloride 3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_760 and Pf6N2E2_761 are separated by 95 nucleotidesPf6N2E2_761 and Pf6N2E2_762 are separated by 183 nucleotidesPf6N2E2_762 and Pf6N2E2_763 are separated by 341 nucleotides Pf6N2E2_760 - Na+/H+ antiporter NhaB, at 870,439 to 871,941 _760 Pf6N2E2_761 - Hemolysin-type calcium-binding region, at 872,037 to 873,326 _761 Pf6N2E2_762 - FIG00960186: hypothetical protein, at 873,510 to 873,776 _762 Pf6N2E2_763 - Sigma-54 dependent transcriptional regulator, at 874,118 to 875,443 _763 Position (kb) 872 873 874Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 871.085 kb on + strand, within Pf6N2E2_760at 871.085 kb on + strand, within Pf6N2E2_760at 871.106 kb on - strand, within Pf6N2E2_760at 871.106 kb on - strand, within Pf6N2E2_760at 871.106 kb on - strand, within Pf6N2E2_760at 871.106 kb on - strand, within Pf6N2E2_760at 871.106 kb on - strand, within Pf6N2E2_760at 871.106 kb on - strand, within Pf6N2E2_760at 871.106 kb on - strand, within Pf6N2E2_760at 871.106 kb on - strand, within Pf6N2E2_760at 871.106 kb on - strand, within Pf6N2E2_760at 871.336 kb on + strand, within Pf6N2E2_760at 871.337 kb on - strand, within Pf6N2E2_760at 871.446 kb on - strand, within Pf6N2E2_760at 871.454 kb on + strand, within Pf6N2E2_760at 871.454 kb on + strand, within Pf6N2E2_760at 871.454 kb on + strand, within Pf6N2E2_760at 871.454 kb on + strand, within Pf6N2E2_760at 871.455 kb on - strand, within Pf6N2E2_760at 871.455 kb on - strand, within Pf6N2E2_760at 871.455 kb on - strand, within Pf6N2E2_760at 871.619 kb on + strand, within Pf6N2E2_760at 871.619 kb on + strand, within Pf6N2E2_760at 871.619 kb on + strand, within Pf6N2E2_760at 871.620 kb on - strand, within Pf6N2E2_760at 871.620 kb on - strand, within Pf6N2E2_760at 871.682 kb on + strand, within Pf6N2E2_760at 871.683 kb on - strand, within Pf6N2E2_760at 871.683 kb on - strand, within Pf6N2E2_760at 871.683 kb on - strand, within Pf6N2E2_760at 871.683 kb on - strand, within Pf6N2E2_760at 871.683 kb on - strand, within Pf6N2E2_760at 871.683 kb on - strand, within Pf6N2E2_760at 871.761 kb on + strand, within Pf6N2E2_760at 871.762 kb on - strand, within Pf6N2E2_760at 871.762 kb on - strand, within Pf6N2E2_760at 871.762 kb on - strand, within Pf6N2E2_760at 871.762 kb on - strand, within Pf6N2E2_760at 871.762 kb on - strand, within Pf6N2E2_760at 871.762 kb on - strand, within Pf6N2E2_760at 871.880 kb on + strandat 871.880 kb on + strandat 871.881 kb on - strandat 871.881 kb on - strandat 871.881 kb on - strandat 871.881 kb on - strandat 871.908 kb on + strandat 871.908 kb on + strandat 871.955 kb on + strandat 871.993 kb on + strandat 872.008 kb on + strandat 872.008 kb on + strandat 872.012 kb on + strandat 872.012 kb on + strandat 872.012 kb on + strandat 872.012 kb on + strandat 872.120 kb on + strandat 872.214 kb on + strand, within Pf6N2E2_761at 872.215 kb on - strand, within Pf6N2E2_761at 872.406 kb on - strand, within Pf6N2E2_761at 872.606 kb on + strand, within Pf6N2E2_761at 872.606 kb on + strand, within Pf6N2E2_761at 872.606 kb on + strand, within Pf6N2E2_761at 872.606 kb on + strand, within Pf6N2E2_761at 872.606 kb on + strand, within Pf6N2E2_761at 872.606 kb on + strand, within Pf6N2E2_761at 872.606 kb on + strand, within Pf6N2E2_761at 872.607 kb on - strand, within Pf6N2E2_761at 872.607 kb on - strand, within Pf6N2E2_761at 872.607 kb on - strand, within Pf6N2E2_761at 872.646 kb on - strand, within Pf6N2E2_761at 872.646 kb on - strand, within Pf6N2E2_761at 872.756 kb on - strand, within Pf6N2E2_761at 872.796 kb on + strand, within Pf6N2E2_761at 872.978 kb on - strand, within Pf6N2E2_761at 873.070 kb on + strand, within Pf6N2E2_761at 873.212 kb on + strandat 873.218 kb on + strandat 873.218 kb on + strandat 873.218 kb on + strandat 873.218 kb on + strandat 873.218 kb on + strandat 873.218 kb on + strandat 873.218 kb on + strandat 873.218 kb on + strandat 873.218 kb on + strandat 873.219 kb on - strandat 873.219 kb on - strandat 873.219 kb on - strandat 873.452 kb on - strandat 873.452 kb on - strandat 873.463 kb on + strandat 873.463 kb on + strandat 873.464 kb on - strandat 873.464 kb on - strandat 873.464 kb on - strandat 873.539 kb on + strand, within Pf6N2E2_762at 873.539 kb on + strand, within Pf6N2E2_762at 873.539 kb on + strand, within Pf6N2E2_762at 873.540 kb on - strand, within Pf6N2E2_762at 873.540 kb on - strand, within Pf6N2E2_762at 873.540 kb on - strand, within Pf6N2E2_762at 873.540 kb on - strand, within Pf6N2E2_762at 873.540 kb on - strand, within Pf6N2E2_762at 873.540 kb on - strand, within Pf6N2E2_762at 873.540 kb on - strand, within Pf6N2E2_762at 873.540 kb on - strand, within Pf6N2E2_762at 873.540 kb on - strand, within Pf6N2E2_762at 873.540 kb on - strand, within Pf6N2E2_762at 873.540 kb on - strand, within Pf6N2E2_762at 873.541 kb on + strand, within Pf6N2E2_762at 873.542 kb on - strand, within Pf6N2E2_762at 873.542 kb on - strand, within Pf6N2E2_762at 873.606 kb on - strand, within Pf6N2E2_762at 873.608 kb on - strand, within Pf6N2E2_762at 873.608 kb on - strand, within Pf6N2E2_762at 873.672 kb on - strand, within Pf6N2E2_762at 873.672 kb on - strand, within Pf6N2E2_762at 873.789 kb on + strandat 873.790 kb on - strandat 873.844 kb on - strandat 873.849 kb on + strandat 873.849 kb on + strandat 873.849 kb on + strandat 873.849 kb on + strandat 873.849 kb on + strandat 873.849 kb on + strandat 873.849 kb on + strandat 873.850 kb on - strandat 873.850 kb on - strandat 873.850 kb on - strandat 873.850 kb on - strandat 873.850 kb on - strandat 873.850 kb on - strandat 873.884 kb on + strandat 873.885 kb on - strandat 873.885 kb on - strandat 873.885 kb on - strandat 873.885 kb on - strandat 873.967 kb on - strandat 873.987 kb on - strandat 874.022 kb on + strandat 874.023 kb on - strandat 874.023 kb on - strandat 874.132 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 3 mM
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871,085 + Pf6N2E2_760 0.43 -1.9
871,085 + Pf6N2E2_760 0.43 -2.3
871,106 - Pf6N2E2_760 0.44 -3.0
871,106 - Pf6N2E2_760 0.44 -3.6
871,106 - Pf6N2E2_760 0.44 -2.8
871,106 - Pf6N2E2_760 0.44 -1.8
871,106 - Pf6N2E2_760 0.44 -1.8
871,106 - Pf6N2E2_760 0.44 -3.1
871,106 - Pf6N2E2_760 0.44 -3.2
871,106 - Pf6N2E2_760 0.44 -2.7
871,106 - Pf6N2E2_760 0.44 -3.5
871,336 + Pf6N2E2_760 0.60 -5.3
871,337 - Pf6N2E2_760 0.60 -5.3
871,446 - Pf6N2E2_760 0.67 -4.3
871,454 + Pf6N2E2_760 0.68 -4.2
871,454 + Pf6N2E2_760 0.68 -3.4
871,454 + Pf6N2E2_760 0.68 -3.8
871,454 + Pf6N2E2_760 0.68 -4.4
871,455 - Pf6N2E2_760 0.68 -3.4
871,455 - Pf6N2E2_760 0.68 -1.9
871,455 - Pf6N2E2_760 0.68 -3.4
871,619 + Pf6N2E2_760 0.79 -2.5
871,619 + Pf6N2E2_760 0.79 -2.5
871,619 + Pf6N2E2_760 0.79 -3.5
871,620 - Pf6N2E2_760 0.79 -3.5
871,620 - Pf6N2E2_760 0.79 -1.1
871,682 + Pf6N2E2_760 0.83 -2.7
871,683 - Pf6N2E2_760 0.83 -2.7
871,683 - Pf6N2E2_760 0.83 -4.1
871,683 - Pf6N2E2_760 0.83 -4.2
871,683 - Pf6N2E2_760 0.83 -4.6
871,683 - Pf6N2E2_760 0.83 -3.2
871,683 - Pf6N2E2_760 0.83 -5.3
871,761 + Pf6N2E2_760 0.88 -2.1
871,762 - Pf6N2E2_760 0.88 -3.9
871,762 - Pf6N2E2_760 0.88 -1.7
871,762 - Pf6N2E2_760 0.88 -3.1
871,762 - Pf6N2E2_760 0.88 -3.8
871,762 - Pf6N2E2_760 0.88 -1.4
871,762 - Pf6N2E2_760 0.88 -3.7
871,880 + -4.7
871,880 + -1.6
871,881 - -2.8
871,881 - -2.3
871,881 - -2.1
871,881 - -3.5
871,908 + -4.8
871,908 + -2.5
871,955 + -2.8
871,993 + -0.6
872,008 + -3.0
872,008 + -4.1
872,012 + -3.6
872,012 + -2.6
872,012 + -2.6
872,012 + -0.8
872,120 + -3.7
872,214 + Pf6N2E2_761 0.14 -0.7
872,215 - Pf6N2E2_761 0.14 +1.2
872,406 - Pf6N2E2_761 0.29 -0.1
872,606 + Pf6N2E2_761 0.44 -2.7
872,606 + Pf6N2E2_761 0.44 +0.2
872,606 + Pf6N2E2_761 0.44 -0.5
872,606 + Pf6N2E2_761 0.44 +0.0
872,606 + Pf6N2E2_761 0.44 +0.9
872,606 + Pf6N2E2_761 0.44 -0.1
872,606 + Pf6N2E2_761 0.44 -2.5
872,607 - Pf6N2E2_761 0.44 +0.7
872,607 - Pf6N2E2_761 0.44 -1.8
872,607 - Pf6N2E2_761 0.44 +0.9
872,646 - Pf6N2E2_761 0.47 -1.3
872,646 - Pf6N2E2_761 0.47 +0.5
872,756 - Pf6N2E2_761 0.56 +1.7
872,796 + Pf6N2E2_761 0.59 +0.8
872,978 - Pf6N2E2_761 0.73 -0.7
873,070 + Pf6N2E2_761 0.80 -1.2
873,212 + +0.8
873,218 + +0.6
873,218 + -0.8
873,218 + +0.0
873,218 + -0.0
873,218 + +1.0
873,218 + +0.2
873,218 + -0.0
873,218 + -0.2
873,218 + -0.1
873,219 - -1.4
873,219 - +0.2
873,219 - +0.1
873,452 - -1.0
873,452 - -0.2
873,463 + +1.7
873,463 + -0.0
873,464 - -3.0
873,464 - -0.5
873,464 - +0.7
873,539 + Pf6N2E2_762 0.11 +0.2
873,539 + Pf6N2E2_762 0.11 -0.3
873,539 + Pf6N2E2_762 0.11 +2.0
873,540 - Pf6N2E2_762 0.11 -2.1
873,540 - Pf6N2E2_762 0.11 -0.4
873,540 - Pf6N2E2_762 0.11 +0.2
873,540 - Pf6N2E2_762 0.11 -0.0
873,540 - Pf6N2E2_762 0.11 +0.4
873,540 - Pf6N2E2_762 0.11 -0.4
873,540 - Pf6N2E2_762 0.11 -0.9
873,540 - Pf6N2E2_762 0.11 +0.2
873,540 - Pf6N2E2_762 0.11 -0.4
873,540 - Pf6N2E2_762 0.11 -0.9
873,540 - Pf6N2E2_762 0.11 +0.5
873,541 + Pf6N2E2_762 0.12 -0.3
873,542 - Pf6N2E2_762 0.12 -0.7
873,542 - Pf6N2E2_762 0.12 -1.8
873,606 - Pf6N2E2_762 0.36 +0.2
873,608 - Pf6N2E2_762 0.37 +0.0
873,608 - Pf6N2E2_762 0.37 -1.2
873,672 - Pf6N2E2_762 0.61 -0.2
873,672 - Pf6N2E2_762 0.61 -2.0
873,789 + +1.5
873,790 - +0.1
873,844 - -0.4
873,849 + +0.5
873,849 + +1.2
873,849 + +0.8
873,849 + +0.2
873,849 + -0.4
873,849 + -1.1
873,849 + +1.4
873,850 - +1.4
873,850 - +1.6
873,850 - +0.8
873,850 - +0.8
873,850 - -0.1
873,850 - +1.0
873,884 + -0.6
873,885 - +0.7
873,885 - +1.4
873,885 - -1.1
873,885 - +0.2
873,967 - +0.8
873,987 - +0.3
874,022 + -0.5
874,023 - +1.1
874,023 - -0.2
874,132 + -1.5

Or see this region's nucleotide sequence