Experiment: copper (II) chloride 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_6033 and Pf6N2E2_6034 overlap by 4 nucleotides Pf6N2E2_6034 and Pf6N2E2_6035 are separated by 15 nucleotides Pf6N2E2_6035 and Pf6N2E2_6036 are separated by 97 nucleotides
Pf6N2E2_6033 - Sterol desaturase, at 6,849,429 to 6,850,526
_6033
Pf6N2E2_6034 - FIG00965471: hypothetical protein, at 6,850,523 to 6,851,338
_6034
Pf6N2E2_6035 - alpha/beta hydrolase fold, at 6,851,354 to 6,852,034
_6035
Pf6N2E2_6036 - hypothetical protein, at 6,852,132 to 6,852,755
_6036
Position (kb)
6850
6851
6852 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 6849.552 kb on + strand, within Pf6N2E2_6033 at 6849.553 kb on - strand, within Pf6N2E2_6033 at 6849.678 kb on + strand, within Pf6N2E2_6033 at 6849.678 kb on + strand, within Pf6N2E2_6033 at 6849.678 kb on + strand, within Pf6N2E2_6033 at 6849.678 kb on + strand, within Pf6N2E2_6033 at 6849.681 kb on + strand, within Pf6N2E2_6033 at 6849.681 kb on + strand, within Pf6N2E2_6033 at 6849.744 kb on + strand, within Pf6N2E2_6033 at 6849.744 kb on + strand, within Pf6N2E2_6033 at 6849.744 kb on + strand, within Pf6N2E2_6033 at 6849.744 kb on + strand, within Pf6N2E2_6033 at 6849.745 kb on - strand, within Pf6N2E2_6033 at 6849.745 kb on - strand, within Pf6N2E2_6033 at 6849.745 kb on - strand, within Pf6N2E2_6033 at 6849.766 kb on - strand, within Pf6N2E2_6033 at 6849.838 kb on - strand, within Pf6N2E2_6033 at 6849.877 kb on - strand, within Pf6N2E2_6033 at 6849.949 kb on + strand, within Pf6N2E2_6033 at 6850.047 kb on + strand, within Pf6N2E2_6033 at 6850.048 kb on - strand, within Pf6N2E2_6033 at 6850.048 kb on - strand, within Pf6N2E2_6033 at 6850.048 kb on - strand, within Pf6N2E2_6033 at 6850.095 kb on + strand, within Pf6N2E2_6033 at 6850.095 kb on + strand, within Pf6N2E2_6033 at 6850.096 kb on - strand, within Pf6N2E2_6033 at 6850.290 kb on + strand, within Pf6N2E2_6033 at 6850.290 kb on + strand, within Pf6N2E2_6033 at 6850.291 kb on - strand, within Pf6N2E2_6033 at 6850.291 kb on - strand, within Pf6N2E2_6033 at 6850.291 kb on - strand, within Pf6N2E2_6033 at 6850.365 kb on + strand, within Pf6N2E2_6033 at 6850.365 kb on + strand, within Pf6N2E2_6033 at 6850.365 kb on + strand, within Pf6N2E2_6033 at 6850.365 kb on + strand, within Pf6N2E2_6033 at 6850.366 kb on - strand, within Pf6N2E2_6033 at 6850.366 kb on - strand, within Pf6N2E2_6033 at 6850.366 kb on - strand, within Pf6N2E2_6033 at 6850.366 kb on - strand, within Pf6N2E2_6033 at 6850.366 kb on - strand, within Pf6N2E2_6033 at 6850.366 kb on - strand, within Pf6N2E2_6033 at 6850.366 kb on - strand, within Pf6N2E2_6033 at 6850.366 kb on - strand, within Pf6N2E2_6033 at 6850.367 kb on + strand, within Pf6N2E2_6033 at 6850.408 kb on - strand, within Pf6N2E2_6033 at 6850.426 kb on - strand at 6850.718 kb on + strand, within Pf6N2E2_6034 at 6850.718 kb on + strand, within Pf6N2E2_6034 at 6850.843 kb on + strand, within Pf6N2E2_6034 at 6850.897 kb on + strand, within Pf6N2E2_6034 at 6850.897 kb on + strand, within Pf6N2E2_6034 at 6850.914 kb on - strand, within Pf6N2E2_6034 at 6850.914 kb on - strand, within Pf6N2E2_6034 at 6850.914 kb on - strand, within Pf6N2E2_6034 at 6851.209 kb on - strand, within Pf6N2E2_6034 at 6851.234 kb on + strand, within Pf6N2E2_6034 at 6851.235 kb on - strand, within Pf6N2E2_6034 at 6851.235 kb on - strand, within Pf6N2E2_6034 at 6851.305 kb on + strand at 6851.912 kb on + strand, within Pf6N2E2_6035 at 6851.913 kb on - strand, within Pf6N2E2_6035 at 6851.913 kb on - strand, within Pf6N2E2_6035 at 6851.980 kb on + strand at 6852.115 kb on - strand at 6852.271 kb on - strand, within Pf6N2E2_6036 at 6852.279 kb on + strand, within Pf6N2E2_6036 at 6852.279 kb on + strand, within Pf6N2E2_6036 at 6852.280 kb on - strand, within Pf6N2E2_6036 at 6852.280 kb on - strand, within Pf6N2E2_6036 at 6852.319 kb on + strand, within Pf6N2E2_6036 at 6852.320 kb on - strand, within Pf6N2E2_6036 at 6852.336 kb on + strand, within Pf6N2E2_6036 at 6852.336 kb on + strand, within Pf6N2E2_6036
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 3 mM remove 6,849,552 + Pf6N2E2_6033 0.11 +0.7 6,849,553 - Pf6N2E2_6033 0.11 -0.7 6,849,678 + Pf6N2E2_6033 0.23 -0.4 6,849,678 + Pf6N2E2_6033 0.23 -1.1 6,849,678 + Pf6N2E2_6033 0.23 +1.5 6,849,678 + Pf6N2E2_6033 0.23 -0.6 6,849,681 + Pf6N2E2_6033 0.23 +0.2 6,849,681 + Pf6N2E2_6033 0.23 +0.4 6,849,744 + Pf6N2E2_6033 0.29 +2.2 6,849,744 + Pf6N2E2_6033 0.29 -1.0 6,849,744 + Pf6N2E2_6033 0.29 -0.2 6,849,744 + Pf6N2E2_6033 0.29 -0.9 6,849,745 - Pf6N2E2_6033 0.29 +0.2 6,849,745 - Pf6N2E2_6033 0.29 -0.1 6,849,745 - Pf6N2E2_6033 0.29 -0.9 6,849,766 - Pf6N2E2_6033 0.31 +0.5 6,849,838 - Pf6N2E2_6033 0.37 +0.3 6,849,877 - Pf6N2E2_6033 0.41 +1.7 6,849,949 + Pf6N2E2_6033 0.47 +0.6 6,850,047 + Pf6N2E2_6033 0.56 -1.7 6,850,048 - Pf6N2E2_6033 0.56 -0.8 6,850,048 - Pf6N2E2_6033 0.56 +0.5 6,850,048 - Pf6N2E2_6033 0.56 +0.9 6,850,095 + Pf6N2E2_6033 0.61 +1.1 6,850,095 + Pf6N2E2_6033 0.61 +1.9 6,850,096 - Pf6N2E2_6033 0.61 -1.2 6,850,290 + Pf6N2E2_6033 0.78 -3.3 6,850,290 + Pf6N2E2_6033 0.78 -0.0 6,850,291 - Pf6N2E2_6033 0.79 +0.3 6,850,291 - Pf6N2E2_6033 0.79 +1.4 6,850,291 - Pf6N2E2_6033 0.79 +1.7 6,850,365 + Pf6N2E2_6033 0.85 -2.8 6,850,365 + Pf6N2E2_6033 0.85 -1.4 6,850,365 + Pf6N2E2_6033 0.85 +1.2 6,850,365 + Pf6N2E2_6033 0.85 +0.4 6,850,366 - Pf6N2E2_6033 0.85 -1.7 6,850,366 - Pf6N2E2_6033 0.85 +1.5 6,850,366 - Pf6N2E2_6033 0.85 -0.7 6,850,366 - Pf6N2E2_6033 0.85 -3.2 6,850,366 - Pf6N2E2_6033 0.85 +0.1 6,850,366 - Pf6N2E2_6033 0.85 +0.6 6,850,366 - Pf6N2E2_6033 0.85 -0.7 6,850,366 - Pf6N2E2_6033 0.85 +0.1 6,850,367 + Pf6N2E2_6033 0.85 +0.3 6,850,408 - Pf6N2E2_6033 0.89 +1.4 6,850,426 - +0.2 6,850,718 + Pf6N2E2_6034 0.24 -1.0 6,850,718 + Pf6N2E2_6034 0.24 +0.0 6,850,843 + Pf6N2E2_6034 0.39 -1.4 6,850,897 + Pf6N2E2_6034 0.46 -0.9 6,850,897 + Pf6N2E2_6034 0.46 -1.0 6,850,914 - Pf6N2E2_6034 0.48 -2.5 6,850,914 - Pf6N2E2_6034 0.48 -2.1 6,850,914 - Pf6N2E2_6034 0.48 +0.4 6,851,209 - Pf6N2E2_6034 0.84 -0.7 6,851,234 + Pf6N2E2_6034 0.87 -0.7 6,851,235 - Pf6N2E2_6034 0.87 +0.8 6,851,235 - Pf6N2E2_6034 0.87 -2.9 6,851,305 + -0.7 6,851,912 + Pf6N2E2_6035 0.82 -0.7 6,851,913 - Pf6N2E2_6035 0.82 +0.6 6,851,913 - Pf6N2E2_6035 0.82 -2.7 6,851,980 + +0.9 6,852,115 - -0.4 6,852,271 - Pf6N2E2_6036 0.22 +2.2 6,852,279 + Pf6N2E2_6036 0.24 -1.4 6,852,279 + Pf6N2E2_6036 0.24 +1.0 6,852,280 - Pf6N2E2_6036 0.24 -1.3 6,852,280 - Pf6N2E2_6036 0.24 -0.1 6,852,319 + Pf6N2E2_6036 0.30 +1.0 6,852,320 - Pf6N2E2_6036 0.30 +0.5 6,852,336 + Pf6N2E2_6036 0.33 +0.6 6,852,336 + Pf6N2E2_6036 0.33 +0.5
Or see this region's nucleotide sequence