Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5027

Experiment: copper (II) chloride 3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5026 and Pf6N2E2_5027 are separated by 128 nucleotidesPf6N2E2_5027 and Pf6N2E2_5028 are separated by 138 nucleotidesPf6N2E2_5028 and Pf6N2E2_5029 overlap by 6 nucleotides Pf6N2E2_5026 - Acyl-CoA dehydrogenase (EC 1.3.8.7), at 5,793,018 to 5,794,667 _5026 Pf6N2E2_5027 - AMP nucleosidase (EC 3.2.2.4), at 5,794,796 to 5,796,259 _5027 Pf6N2E2_5028 - Ribosomal large subunit pseudouridine synthase E (EC 4.2.1.70), at 5,796,398 to 5,796,964 _5028 Pf6N2E2_5029 - FIG00954142: hypothetical protein, at 5,796,959 to 5,797,168 _5029 Position (kb) 5794 5795 5796 5797Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 5794.179 kb on + strand, within Pf6N2E2_5026at 5794.179 kb on + strand, within Pf6N2E2_5026at 5794.179 kb on + strand, within Pf6N2E2_5026at 5794.179 kb on + strand, within Pf6N2E2_5026at 5794.180 kb on - strand, within Pf6N2E2_5026at 5794.180 kb on - strand, within Pf6N2E2_5026at 5794.275 kb on + strand, within Pf6N2E2_5026at 5794.375 kb on + strand, within Pf6N2E2_5026at 5794.375 kb on + strand, within Pf6N2E2_5026at 5794.375 kb on + strand, within Pf6N2E2_5026at 5794.473 kb on + strand, within Pf6N2E2_5026at 5794.599 kb on + strandat 5794.599 kb on + strandat 5794.599 kb on + strandat 5794.599 kb on + strandat 5794.599 kb on + strandat 5794.600 kb on - strandat 5794.600 kb on - strandat 5794.600 kb on - strandat 5794.665 kb on + strandat 5794.678 kb on + strandat 5794.678 kb on + strandat 5794.678 kb on + strandat 5794.678 kb on + strandat 5794.678 kb on + strandat 5794.679 kb on - strandat 5794.679 kb on - strandat 5794.679 kb on - strandat 5794.679 kb on - strandat 5794.679 kb on - strandat 5794.679 kb on - strandat 5794.973 kb on + strand, within Pf6N2E2_5027at 5795.013 kb on - strand, within Pf6N2E2_5027at 5795.039 kb on + strand, within Pf6N2E2_5027at 5795.039 kb on + strand, within Pf6N2E2_5027at 5795.039 kb on + strand, within Pf6N2E2_5027at 5795.040 kb on - strand, within Pf6N2E2_5027at 5795.040 kb on - strand, within Pf6N2E2_5027at 5795.040 kb on - strand, within Pf6N2E2_5027at 5795.040 kb on - strand, within Pf6N2E2_5027at 5795.040 kb on - strand, within Pf6N2E2_5027at 5795.074 kb on + strand, within Pf6N2E2_5027at 5795.074 kb on + strand, within Pf6N2E2_5027at 5795.075 kb on - strand, within Pf6N2E2_5027at 5795.075 kb on - strand, within Pf6N2E2_5027at 5795.075 kb on - strand, within Pf6N2E2_5027at 5795.075 kb on - strand, within Pf6N2E2_5027at 5795.078 kb on + strand, within Pf6N2E2_5027at 5795.078 kb on + strand, within Pf6N2E2_5027at 5795.079 kb on - strand, within Pf6N2E2_5027at 5795.079 kb on - strand, within Pf6N2E2_5027at 5795.165 kb on + strand, within Pf6N2E2_5027at 5795.165 kb on + strand, within Pf6N2E2_5027at 5795.166 kb on - strand, within Pf6N2E2_5027at 5795.282 kb on + strand, within Pf6N2E2_5027at 5795.282 kb on + strand, within Pf6N2E2_5027at 5795.283 kb on - strand, within Pf6N2E2_5027at 5795.366 kb on + strand, within Pf6N2E2_5027at 5795.367 kb on - strand, within Pf6N2E2_5027at 5795.367 kb on - strand, within Pf6N2E2_5027at 5795.417 kb on + strand, within Pf6N2E2_5027at 5795.417 kb on + strand, within Pf6N2E2_5027at 5795.417 kb on + strand, within Pf6N2E2_5027at 5795.417 kb on + strand, within Pf6N2E2_5027at 5795.417 kb on + strand, within Pf6N2E2_5027at 5795.418 kb on - strand, within Pf6N2E2_5027at 5795.418 kb on - strand, within Pf6N2E2_5027at 5795.418 kb on - strand, within Pf6N2E2_5027at 5795.426 kb on + strand, within Pf6N2E2_5027at 5795.427 kb on - strand, within Pf6N2E2_5027at 5795.592 kb on - strand, within Pf6N2E2_5027at 5795.592 kb on - strand, within Pf6N2E2_5027at 5795.756 kb on + strand, within Pf6N2E2_5027at 5795.756 kb on + strand, within Pf6N2E2_5027at 5795.757 kb on - strand, within Pf6N2E2_5027at 5795.774 kb on + strand, within Pf6N2E2_5027at 5795.774 kb on + strand, within Pf6N2E2_5027at 5795.774 kb on + strand, within Pf6N2E2_5027at 5795.775 kb on - strand, within Pf6N2E2_5027at 5795.775 kb on - strand, within Pf6N2E2_5027at 5795.775 kb on - strand, within Pf6N2E2_5027at 5795.775 kb on - strand, within Pf6N2E2_5027at 5795.775 kb on - strand, within Pf6N2E2_5027at 5795.936 kb on + strand, within Pf6N2E2_5027at 5795.936 kb on + strand, within Pf6N2E2_5027at 5796.062 kb on + strand, within Pf6N2E2_5027at 5796.137 kb on + strandat 5796.137 kb on + strandat 5796.138 kb on - strandat 5796.138 kb on - strandat 5796.273 kb on - strandat 5796.273 kb on - strandat 5796.273 kb on - strandat 5796.273 kb on - strandat 5796.273 kb on - strandat 5796.276 kb on + strandat 5796.313 kb on + strandat 5796.313 kb on + strandat 5796.314 kb on - strandat 5796.314 kb on - strandat 5796.314 kb on - strandat 5796.514 kb on - strand, within Pf6N2E2_5028at 5796.524 kb on + strand, within Pf6N2E2_5028at 5796.570 kb on + strand, within Pf6N2E2_5028at 5796.632 kb on + strand, within Pf6N2E2_5028at 5796.633 kb on - strand, within Pf6N2E2_5028at 5796.633 kb on - strand, within Pf6N2E2_5028at 5796.633 kb on - strand, within Pf6N2E2_5028at 5796.784 kb on + strand, within Pf6N2E2_5028at 5796.960 kb on + strandat 5796.960 kb on + strandat 5796.960 kb on + strandat 5796.960 kb on + strandat 5796.960 kb on + strandat 5796.960 kb on + strandat 5796.961 kb on - strandat 5796.961 kb on - strandat 5796.962 kb on + strandat 5796.962 kb on + strandat 5796.962 kb on + strandat 5796.963 kb on - strandat 5796.963 kb on - strandat 5797.211 kb on + strandat 5797.212 kb on - strandat 5797.213 kb on + strandat 5797.213 kb on + strandat 5797.213 kb on + strandat 5797.214 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 3 mM
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5,794,179 + Pf6N2E2_5026 0.70 +0.1
5,794,179 + Pf6N2E2_5026 0.70 +0.8
5,794,179 + Pf6N2E2_5026 0.70 +0.5
5,794,179 + Pf6N2E2_5026 0.70 +0.5
5,794,180 - Pf6N2E2_5026 0.70 +0.1
5,794,180 - Pf6N2E2_5026 0.70 +1.0
5,794,275 + Pf6N2E2_5026 0.76 +0.9
5,794,375 + Pf6N2E2_5026 0.82 -0.5
5,794,375 + Pf6N2E2_5026 0.82 +0.8
5,794,375 + Pf6N2E2_5026 0.82 +0.1
5,794,473 + Pf6N2E2_5026 0.88 -0.1
5,794,599 + +2.0
5,794,599 + -1.4
5,794,599 + +1.6
5,794,599 + +1.5
5,794,599 + -1.5
5,794,600 - +1.0
5,794,600 - +0.9
5,794,600 - +0.5
5,794,665 + +1.2
5,794,678 + +0.3
5,794,678 + +0.6
5,794,678 + -0.2
5,794,678 + +0.6
5,794,678 + -0.7
5,794,679 - -2.2
5,794,679 - -0.8
5,794,679 - -0.1
5,794,679 - +1.4
5,794,679 - +0.3
5,794,679 - +1.0
5,794,973 + Pf6N2E2_5027 0.12 -0.9
5,795,013 - Pf6N2E2_5027 0.15 -3.1
5,795,039 + Pf6N2E2_5027 0.17 -2.8
5,795,039 + Pf6N2E2_5027 0.17 -4.3
5,795,039 + Pf6N2E2_5027 0.17 -3.4
5,795,040 - Pf6N2E2_5027 0.17 -4.9
5,795,040 - Pf6N2E2_5027 0.17 -2.6
5,795,040 - Pf6N2E2_5027 0.17 -3.2
5,795,040 - Pf6N2E2_5027 0.17 -4.0
5,795,040 - Pf6N2E2_5027 0.17 -3.2
5,795,074 + Pf6N2E2_5027 0.19 -3.5
5,795,074 + Pf6N2E2_5027 0.19 -4.5
5,795,075 - Pf6N2E2_5027 0.19 -4.6
5,795,075 - Pf6N2E2_5027 0.19 -3.5
5,795,075 - Pf6N2E2_5027 0.19 -4.5
5,795,075 - Pf6N2E2_5027 0.19 +0.3
5,795,078 + Pf6N2E2_5027 0.19 -4.5
5,795,078 + Pf6N2E2_5027 0.19 -3.2
5,795,079 - Pf6N2E2_5027 0.19 -4.0
5,795,079 - Pf6N2E2_5027 0.19 -3.6
5,795,165 + Pf6N2E2_5027 0.25 -3.6
5,795,165 + Pf6N2E2_5027 0.25 -1.7
5,795,166 - Pf6N2E2_5027 0.25 -4.5
5,795,282 + Pf6N2E2_5027 0.33 -1.9
5,795,282 + Pf6N2E2_5027 0.33 -3.7
5,795,283 - Pf6N2E2_5027 0.33 -4.1
5,795,366 + Pf6N2E2_5027 0.39 -2.5
5,795,367 - Pf6N2E2_5027 0.39 -2.8
5,795,367 - Pf6N2E2_5027 0.39 -4.5
5,795,417 + Pf6N2E2_5027 0.42 -3.6
5,795,417 + Pf6N2E2_5027 0.42 -3.4
5,795,417 + Pf6N2E2_5027 0.42 -3.6
5,795,417 + Pf6N2E2_5027 0.42 -3.2
5,795,417 + Pf6N2E2_5027 0.42 -3.8
5,795,418 - Pf6N2E2_5027 0.42 -4.3
5,795,418 - Pf6N2E2_5027 0.42 -3.6
5,795,418 - Pf6N2E2_5027 0.42 -4.3
5,795,426 + Pf6N2E2_5027 0.43 -4.4
5,795,427 - Pf6N2E2_5027 0.43 -3.0
5,795,592 - Pf6N2E2_5027 0.54 -4.6
5,795,592 - Pf6N2E2_5027 0.54 -4.5
5,795,756 + Pf6N2E2_5027 0.66 -4.0
5,795,756 + Pf6N2E2_5027 0.66 -3.9
5,795,757 - Pf6N2E2_5027 0.66 -3.8
5,795,774 + Pf6N2E2_5027 0.67 -0.6
5,795,774 + Pf6N2E2_5027 0.67 +0.4
5,795,774 + Pf6N2E2_5027 0.67 -3.4
5,795,775 - Pf6N2E2_5027 0.67 -4.3
5,795,775 - Pf6N2E2_5027 0.67 -3.0
5,795,775 - Pf6N2E2_5027 0.67 -2.2
5,795,775 - Pf6N2E2_5027 0.67 -1.2
5,795,775 - Pf6N2E2_5027 0.67 -3.5
5,795,936 + Pf6N2E2_5027 0.78 -2.9
5,795,936 + Pf6N2E2_5027 0.78 -2.2
5,796,062 + Pf6N2E2_5027 0.86 -2.5
5,796,137 + -3.1
5,796,137 + +2.0
5,796,138 - -3.7
5,796,138 - -3.9
5,796,273 - +0.4
5,796,273 - -0.8
5,796,273 - +0.2
5,796,273 - +0.2
5,796,273 - -1.1
5,796,276 + +1.1
5,796,313 + -3.0
5,796,313 + -0.8
5,796,314 - -1.0
5,796,314 - -2.1
5,796,314 - +0.7
5,796,514 - Pf6N2E2_5028 0.20 +0.4
5,796,524 + Pf6N2E2_5028 0.22 +0.1
5,796,570 + Pf6N2E2_5028 0.30 -1.0
5,796,632 + Pf6N2E2_5028 0.41 -1.7
5,796,633 - Pf6N2E2_5028 0.41 -0.9
5,796,633 - Pf6N2E2_5028 0.41 +0.3
5,796,633 - Pf6N2E2_5028 0.41 -1.3
5,796,784 + Pf6N2E2_5028 0.68 -0.4
5,796,960 + -1.6
5,796,960 + +1.0
5,796,960 + -0.6
5,796,960 + -1.2
5,796,960 + -1.7
5,796,960 + +0.5
5,796,961 - -0.2
5,796,961 - -0.5
5,796,962 + +0.1
5,796,962 + +0.5
5,796,962 + -0.5
5,796,963 - +0.8
5,796,963 - +0.6
5,797,211 + -0.1
5,797,212 - +0.5
5,797,213 + +0.2
5,797,213 + +1.1
5,797,213 + +0.2
5,797,214 - +3.0

Or see this region's nucleotide sequence