Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4945

Experiment: copper (II) chloride 3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4944 and Pf6N2E2_4945 overlap by 14 nucleotidesPf6N2E2_4945 and Pf6N2E2_4946 are separated by 15 nucleotidesPf6N2E2_4946 and Pf6N2E2_4947 are separated by 19 nucleotides Pf6N2E2_4944 - Putative potassium channel protein, at 5,700,770 to 5,701,804 _4944 Pf6N2E2_4945 - FIG00955711: hypothetical protein, at 5,701,791 to 5,702,453 _4945 Pf6N2E2_4946 - Membrane protein with DUF350 domain, at 5,702,469 to 5,702,897 _4946 Pf6N2E2_4947 - FIG00954030: hypothetical protein, at 5,702,917 to 5,703,618 _4947 Position (kb) 5701 5702 5703Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5700.798 kb on - strandat 5700.798 kb on - strandat 5700.798 kb on - strandat 5700.798 kb on - strandat 5700.798 kb on - strandat 5700.798 kb on - strandat 5700.925 kb on + strand, within Pf6N2E2_4944at 5700.926 kb on - strand, within Pf6N2E2_4944at 5700.926 kb on - strand, within Pf6N2E2_4944at 5700.929 kb on + strand, within Pf6N2E2_4944at 5700.929 kb on + strand, within Pf6N2E2_4944at 5700.929 kb on + strand, within Pf6N2E2_4944at 5700.929 kb on + strand, within Pf6N2E2_4944at 5700.929 kb on + strand, within Pf6N2E2_4944at 5700.930 kb on - strand, within Pf6N2E2_4944at 5700.930 kb on - strand, within Pf6N2E2_4944at 5700.930 kb on - strand, within Pf6N2E2_4944at 5700.935 kb on + strand, within Pf6N2E2_4944at 5700.935 kb on + strand, within Pf6N2E2_4944at 5700.936 kb on - strand, within Pf6N2E2_4944at 5700.936 kb on - strand, within Pf6N2E2_4944at 5701.030 kb on + strand, within Pf6N2E2_4944at 5701.083 kb on + strand, within Pf6N2E2_4944at 5701.083 kb on + strand, within Pf6N2E2_4944at 5701.083 kb on + strand, within Pf6N2E2_4944at 5701.083 kb on + strand, within Pf6N2E2_4944at 5701.084 kb on - strand, within Pf6N2E2_4944at 5701.084 kb on - strand, within Pf6N2E2_4944at 5701.606 kb on - strand, within Pf6N2E2_4944at 5701.640 kb on + strand, within Pf6N2E2_4944at 5701.640 kb on + strand, within Pf6N2E2_4944at 5701.640 kb on + strand, within Pf6N2E2_4944at 5701.641 kb on - strand, within Pf6N2E2_4944at 5701.669 kb on + strand, within Pf6N2E2_4944at 5701.670 kb on - strand, within Pf6N2E2_4944at 5701.670 kb on - strand, within Pf6N2E2_4944at 5701.757 kb on + strandat 5701.757 kb on + strandat 5701.757 kb on + strandat 5701.757 kb on + strandat 5701.757 kb on + strandat 5701.757 kb on + strandat 5701.757 kb on + strandat 5701.758 kb on - strandat 5701.758 kb on - strandat 5701.758 kb on - strandat 5701.758 kb on - strandat 5701.802 kb on + strandat 5702.025 kb on + strand, within Pf6N2E2_4945at 5702.025 kb on + strand, within Pf6N2E2_4945at 5702.026 kb on - strand, within Pf6N2E2_4945at 5702.026 kb on - strand, within Pf6N2E2_4945at 5702.026 kb on - strand, within Pf6N2E2_4945at 5702.044 kb on - strand, within Pf6N2E2_4945at 5702.044 kb on - strand, within Pf6N2E2_4945at 5702.044 kb on - strand, within Pf6N2E2_4945at 5702.109 kb on + strand, within Pf6N2E2_4945at 5702.110 kb on - strand, within Pf6N2E2_4945at 5702.110 kb on - strand, within Pf6N2E2_4945at 5702.118 kb on + strand, within Pf6N2E2_4945at 5702.118 kb on + strand, within Pf6N2E2_4945at 5702.119 kb on - strand, within Pf6N2E2_4945at 5702.119 kb on - strand, within Pf6N2E2_4945at 5702.119 kb on - strand, within Pf6N2E2_4945at 5702.119 kb on - strand, within Pf6N2E2_4945at 5702.190 kb on + strand, within Pf6N2E2_4945at 5702.212 kb on - strand, within Pf6N2E2_4945at 5702.292 kb on + strand, within Pf6N2E2_4945at 5702.319 kb on + strand, within Pf6N2E2_4945at 5702.320 kb on - strand, within Pf6N2E2_4945at 5702.427 kb on + strandat 5702.427 kb on + strandat 5702.428 kb on - strandat 5702.428 kb on - strandat 5702.428 kb on - strandat 5702.428 kb on - strandat 5702.456 kb on - strandat 5702.526 kb on + strand, within Pf6N2E2_4946at 5702.526 kb on + strand, within Pf6N2E2_4946at 5702.527 kb on - strand, within Pf6N2E2_4946at 5702.527 kb on - strand, within Pf6N2E2_4946at 5702.527 kb on - strand, within Pf6N2E2_4946at 5702.527 kb on - strand, within Pf6N2E2_4946at 5702.527 kb on - strand, within Pf6N2E2_4946at 5702.571 kb on + strand, within Pf6N2E2_4946at 5702.571 kb on + strand, within Pf6N2E2_4946at 5702.571 kb on + strand, within Pf6N2E2_4946at 5702.571 kb on + strand, within Pf6N2E2_4946at 5702.572 kb on - strand, within Pf6N2E2_4946at 5702.572 kb on - strand, within Pf6N2E2_4946at 5702.572 kb on - strand, within Pf6N2E2_4946at 5702.572 kb on - strand, within Pf6N2E2_4946at 5702.825 kb on + strand, within Pf6N2E2_4946at 5702.829 kb on + strand, within Pf6N2E2_4946at 5702.829 kb on + strand, within Pf6N2E2_4946at 5702.829 kb on + strand, within Pf6N2E2_4946at 5702.829 kb on + strand, within Pf6N2E2_4946at 5702.829 kb on + strand, within Pf6N2E2_4946at 5702.829 kb on + strand, within Pf6N2E2_4946at 5702.829 kb on + strand, within Pf6N2E2_4946at 5702.830 kb on - strand, within Pf6N2E2_4946at 5702.830 kb on - strand, within Pf6N2E2_4946at 5702.830 kb on - strand, within Pf6N2E2_4946at 5702.830 kb on - strand, within Pf6N2E2_4946at 5702.830 kb on - strand, within Pf6N2E2_4946at 5702.830 kb on - strand, within Pf6N2E2_4946at 5702.830 kb on - strand, within Pf6N2E2_4946at 5702.830 kb on - strand, within Pf6N2E2_4946at 5702.830 kb on - strand, within Pf6N2E2_4946at 5702.830 kb on - strand, within Pf6N2E2_4946at 5702.830 kb on - strand, within Pf6N2E2_4946at 5702.830 kb on - strand, within Pf6N2E2_4946at 5702.830 kb on - strand, within Pf6N2E2_4946at 5702.830 kb on - strand, within Pf6N2E2_4946at 5702.830 kb on - strand, within Pf6N2E2_4946at 5702.932 kb on + strandat 5702.932 kb on + strandat 5702.933 kb on - strandat 5702.933 kb on - strandat 5702.933 kb on - strandat 5702.933 kb on - strandat 5702.933 kb on - strandat 5702.933 kb on - strandat 5703.019 kb on + strand, within Pf6N2E2_4947at 5703.020 kb on - strand, within Pf6N2E2_4947at 5703.020 kb on - strand, within Pf6N2E2_4947at 5703.020 kb on - strand, within Pf6N2E2_4947at 5703.020 kb on - strand, within Pf6N2E2_4947at 5703.065 kb on + strand, within Pf6N2E2_4947at 5703.069 kb on + strand, within Pf6N2E2_4947at 5703.069 kb on + strand, within Pf6N2E2_4947at 5703.069 kb on + strand, within Pf6N2E2_4947at 5703.069 kb on + strand, within Pf6N2E2_4947at 5703.070 kb on - strand, within Pf6N2E2_4947at 5703.070 kb on - strand, within Pf6N2E2_4947at 5703.085 kb on + strand, within Pf6N2E2_4947at 5703.085 kb on + strand, within Pf6N2E2_4947at 5703.085 kb on + strand, within Pf6N2E2_4947at 5703.086 kb on - strand, within Pf6N2E2_4947at 5703.127 kb on + strand, within Pf6N2E2_4947at 5703.127 kb on + strand, within Pf6N2E2_4947at 5703.373 kb on + strand, within Pf6N2E2_4947at 5703.374 kb on - strand, within Pf6N2E2_4947at 5703.374 kb on - strand, within Pf6N2E2_4947at 5703.391 kb on + strand, within Pf6N2E2_4947at 5703.391 kb on + strand, within Pf6N2E2_4947

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 3 mM
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5,700,798 - -0.9
5,700,798 - -1.2
5,700,798 - -1.7
5,700,798 - +0.2
5,700,798 - -0.9
5,700,798 - -0.0
5,700,925 + Pf6N2E2_4944 0.15 -0.5
5,700,926 - Pf6N2E2_4944 0.15 -1.1
5,700,926 - Pf6N2E2_4944 0.15 -0.5
5,700,929 + Pf6N2E2_4944 0.15 -0.0
5,700,929 + Pf6N2E2_4944 0.15 -0.6
5,700,929 + Pf6N2E2_4944 0.15 -0.4
5,700,929 + Pf6N2E2_4944 0.15 -3.3
5,700,929 + Pf6N2E2_4944 0.15 -0.8
5,700,930 - Pf6N2E2_4944 0.15 -1.0
5,700,930 - Pf6N2E2_4944 0.15 -1.1
5,700,930 - Pf6N2E2_4944 0.15 -0.1
5,700,935 + Pf6N2E2_4944 0.16 -2.0
5,700,935 + Pf6N2E2_4944 0.16 -2.2
5,700,936 - Pf6N2E2_4944 0.16 -2.0
5,700,936 - Pf6N2E2_4944 0.16 +0.7
5,701,030 + Pf6N2E2_4944 0.25 -3.7
5,701,083 + Pf6N2E2_4944 0.30 -0.9
5,701,083 + Pf6N2E2_4944 0.30 -2.7
5,701,083 + Pf6N2E2_4944 0.30 -0.5
5,701,083 + Pf6N2E2_4944 0.30 +0.2
5,701,084 - Pf6N2E2_4944 0.30 +0.3
5,701,084 - Pf6N2E2_4944 0.30 +1.8
5,701,606 - Pf6N2E2_4944 0.81 -1.6
5,701,640 + Pf6N2E2_4944 0.84 +0.3
5,701,640 + Pf6N2E2_4944 0.84 -2.3
5,701,640 + Pf6N2E2_4944 0.84 -1.5
5,701,641 - Pf6N2E2_4944 0.84 -0.9
5,701,669 + Pf6N2E2_4944 0.87 -1.2
5,701,670 - Pf6N2E2_4944 0.87 -0.8
5,701,670 - Pf6N2E2_4944 0.87 -2.7
5,701,757 + +0.7
5,701,757 + +0.9
5,701,757 + -1.7
5,701,757 + -2.0
5,701,757 + +0.6
5,701,757 + -1.3
5,701,757 + -0.3
5,701,758 - +0.7
5,701,758 - +0.4
5,701,758 - +0.1
5,701,758 - -0.8
5,701,802 + -1.0
5,702,025 + Pf6N2E2_4945 0.35 -3.3
5,702,025 + Pf6N2E2_4945 0.35 -1.8
5,702,026 - Pf6N2E2_4945 0.35 -2.8
5,702,026 - Pf6N2E2_4945 0.35 -3.4
5,702,026 - Pf6N2E2_4945 0.35 +1.1
5,702,044 - Pf6N2E2_4945 0.38 -1.6
5,702,044 - Pf6N2E2_4945 0.38 +0.3
5,702,044 - Pf6N2E2_4945 0.38 -0.4
5,702,109 + Pf6N2E2_4945 0.48 -3.5
5,702,110 - Pf6N2E2_4945 0.48 -0.6
5,702,110 - Pf6N2E2_4945 0.48 -0.7
5,702,118 + Pf6N2E2_4945 0.49 -2.6
5,702,118 + Pf6N2E2_4945 0.49 -2.2
5,702,119 - Pf6N2E2_4945 0.49 -0.3
5,702,119 - Pf6N2E2_4945 0.49 -1.2
5,702,119 - Pf6N2E2_4945 0.49 +1.0
5,702,119 - Pf6N2E2_4945 0.49 -1.5
5,702,190 + Pf6N2E2_4945 0.60 -1.4
5,702,212 - Pf6N2E2_4945 0.63 -0.6
5,702,292 + Pf6N2E2_4945 0.76 -0.1
5,702,319 + Pf6N2E2_4945 0.80 -1.3
5,702,320 - Pf6N2E2_4945 0.80 -1.2
5,702,427 + -3.5
5,702,427 + -2.9
5,702,428 - -0.6
5,702,428 - -1.9
5,702,428 - -2.5
5,702,428 - -0.5
5,702,456 - -2.0
5,702,526 + Pf6N2E2_4946 0.13 -1.0
5,702,526 + Pf6N2E2_4946 0.13 +0.3
5,702,527 - Pf6N2E2_4946 0.14 -0.0
5,702,527 - Pf6N2E2_4946 0.14 +0.9
5,702,527 - Pf6N2E2_4946 0.14 -0.2
5,702,527 - Pf6N2E2_4946 0.14 +0.2
5,702,527 - Pf6N2E2_4946 0.14 +0.4
5,702,571 + Pf6N2E2_4946 0.24 -0.5
5,702,571 + Pf6N2E2_4946 0.24 -0.5
5,702,571 + Pf6N2E2_4946 0.24 -3.1
5,702,571 + Pf6N2E2_4946 0.24 +0.4
5,702,572 - Pf6N2E2_4946 0.24 +0.9
5,702,572 - Pf6N2E2_4946 0.24 -0.3
5,702,572 - Pf6N2E2_4946 0.24 -1.0
5,702,572 - Pf6N2E2_4946 0.24 +0.7
5,702,825 + Pf6N2E2_4946 0.83 -2.8
5,702,829 + Pf6N2E2_4946 0.84 -3.0
5,702,829 + Pf6N2E2_4946 0.84 +0.5
5,702,829 + Pf6N2E2_4946 0.84 -3.6
5,702,829 + Pf6N2E2_4946 0.84 -1.4
5,702,829 + Pf6N2E2_4946 0.84 -0.4
5,702,829 + Pf6N2E2_4946 0.84 +0.8
5,702,829 + Pf6N2E2_4946 0.84 -0.6
5,702,830 - Pf6N2E2_4946 0.84 -0.4
5,702,830 - Pf6N2E2_4946 0.84 -0.5
5,702,830 - Pf6N2E2_4946 0.84 -1.2
5,702,830 - Pf6N2E2_4946 0.84 -0.4
5,702,830 - Pf6N2E2_4946 0.84 +0.6
5,702,830 - Pf6N2E2_4946 0.84 -0.4
5,702,830 - Pf6N2E2_4946 0.84 -1.5
5,702,830 - Pf6N2E2_4946 0.84 +0.4
5,702,830 - Pf6N2E2_4946 0.84 +0.8
5,702,830 - Pf6N2E2_4946 0.84 +0.5
5,702,830 - Pf6N2E2_4946 0.84 +0.0
5,702,830 - Pf6N2E2_4946 0.84 -0.4
5,702,830 - Pf6N2E2_4946 0.84 +0.7
5,702,830 - Pf6N2E2_4946 0.84 +0.5
5,702,830 - Pf6N2E2_4946 0.84 -2.6
5,702,932 + -0.6
5,702,932 + -1.5
5,702,933 - +0.0
5,702,933 - +0.8
5,702,933 - +0.6
5,702,933 - +0.6
5,702,933 - -0.2
5,702,933 - -2.5
5,703,019 + Pf6N2E2_4947 0.15 -1.2
5,703,020 - Pf6N2E2_4947 0.15 -0.1
5,703,020 - Pf6N2E2_4947 0.15 -0.3
5,703,020 - Pf6N2E2_4947 0.15 -2.7
5,703,020 - Pf6N2E2_4947 0.15 +1.1
5,703,065 + Pf6N2E2_4947 0.21 +0.2
5,703,069 + Pf6N2E2_4947 0.22 -0.8
5,703,069 + Pf6N2E2_4947 0.22 -2.7
5,703,069 + Pf6N2E2_4947 0.22 -0.9
5,703,069 + Pf6N2E2_4947 0.22 -0.5
5,703,070 - Pf6N2E2_4947 0.22 -0.0
5,703,070 - Pf6N2E2_4947 0.22 +0.4
5,703,085 + Pf6N2E2_4947 0.24 -0.7
5,703,085 + Pf6N2E2_4947 0.24 -2.6
5,703,085 + Pf6N2E2_4947 0.24 +0.4
5,703,086 - Pf6N2E2_4947 0.24 -0.9
5,703,127 + Pf6N2E2_4947 0.30 -0.9
5,703,127 + Pf6N2E2_4947 0.30 +0.7
5,703,373 + Pf6N2E2_4947 0.65 -0.4
5,703,374 - Pf6N2E2_4947 0.65 +1.0
5,703,374 - Pf6N2E2_4947 0.65 +0.2
5,703,391 + Pf6N2E2_4947 0.68 -1.2
5,703,391 + Pf6N2E2_4947 0.68 +0.1

Or see this region's nucleotide sequence