Experiment: copper (II) chloride 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4944 and Pf6N2E2_4945 overlap by 14 nucleotides Pf6N2E2_4945 and Pf6N2E2_4946 are separated by 15 nucleotides Pf6N2E2_4946 and Pf6N2E2_4947 are separated by 19 nucleotides
Pf6N2E2_4944 - Putative potassium channel protein, at 5,700,770 to 5,701,804
_4944
Pf6N2E2_4945 - FIG00955711: hypothetical protein, at 5,701,791 to 5,702,453
_4945
Pf6N2E2_4946 - Membrane protein with DUF350 domain, at 5,702,469 to 5,702,897
_4946
Pf6N2E2_4947 - FIG00954030: hypothetical protein, at 5,702,917 to 5,703,618
_4947
Position (kb)
5701
5702
5703 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 5700.798 kb on - strand at 5700.798 kb on - strand at 5700.798 kb on - strand at 5700.798 kb on - strand at 5700.798 kb on - strand at 5700.798 kb on - strand at 5700.925 kb on + strand, within Pf6N2E2_4944 at 5700.926 kb on - strand, within Pf6N2E2_4944 at 5700.926 kb on - strand, within Pf6N2E2_4944 at 5700.929 kb on + strand, within Pf6N2E2_4944 at 5700.929 kb on + strand, within Pf6N2E2_4944 at 5700.929 kb on + strand, within Pf6N2E2_4944 at 5700.929 kb on + strand, within Pf6N2E2_4944 at 5700.929 kb on + strand, within Pf6N2E2_4944 at 5700.930 kb on - strand, within Pf6N2E2_4944 at 5700.930 kb on - strand, within Pf6N2E2_4944 at 5700.930 kb on - strand, within Pf6N2E2_4944 at 5700.935 kb on + strand, within Pf6N2E2_4944 at 5700.935 kb on + strand, within Pf6N2E2_4944 at 5700.936 kb on - strand, within Pf6N2E2_4944 at 5700.936 kb on - strand, within Pf6N2E2_4944 at 5701.030 kb on + strand, within Pf6N2E2_4944 at 5701.083 kb on + strand, within Pf6N2E2_4944 at 5701.083 kb on + strand, within Pf6N2E2_4944 at 5701.083 kb on + strand, within Pf6N2E2_4944 at 5701.083 kb on + strand, within Pf6N2E2_4944 at 5701.084 kb on - strand, within Pf6N2E2_4944 at 5701.084 kb on - strand, within Pf6N2E2_4944 at 5701.606 kb on - strand, within Pf6N2E2_4944 at 5701.640 kb on + strand, within Pf6N2E2_4944 at 5701.640 kb on + strand, within Pf6N2E2_4944 at 5701.640 kb on + strand, within Pf6N2E2_4944 at 5701.641 kb on - strand, within Pf6N2E2_4944 at 5701.669 kb on + strand, within Pf6N2E2_4944 at 5701.670 kb on - strand, within Pf6N2E2_4944 at 5701.670 kb on - strand, within Pf6N2E2_4944 at 5701.757 kb on + strand at 5701.757 kb on + strand at 5701.757 kb on + strand at 5701.757 kb on + strand at 5701.757 kb on + strand at 5701.757 kb on + strand at 5701.757 kb on + strand at 5701.758 kb on - strand at 5701.758 kb on - strand at 5701.758 kb on - strand at 5701.758 kb on - strand at 5701.802 kb on + strand at 5702.025 kb on + strand, within Pf6N2E2_4945 at 5702.025 kb on + strand, within Pf6N2E2_4945 at 5702.026 kb on - strand, within Pf6N2E2_4945 at 5702.026 kb on - strand, within Pf6N2E2_4945 at 5702.026 kb on - strand, within Pf6N2E2_4945 at 5702.044 kb on - strand, within Pf6N2E2_4945 at 5702.044 kb on - strand, within Pf6N2E2_4945 at 5702.044 kb on - strand, within Pf6N2E2_4945 at 5702.109 kb on + strand, within Pf6N2E2_4945 at 5702.110 kb on - strand, within Pf6N2E2_4945 at 5702.110 kb on - strand, within Pf6N2E2_4945 at 5702.118 kb on + strand, within Pf6N2E2_4945 at 5702.118 kb on + strand, within Pf6N2E2_4945 at 5702.119 kb on - strand, within Pf6N2E2_4945 at 5702.119 kb on - strand, within Pf6N2E2_4945 at 5702.119 kb on - strand, within Pf6N2E2_4945 at 5702.119 kb on - strand, within Pf6N2E2_4945 at 5702.190 kb on + strand, within Pf6N2E2_4945 at 5702.212 kb on - strand, within Pf6N2E2_4945 at 5702.292 kb on + strand, within Pf6N2E2_4945 at 5702.319 kb on + strand, within Pf6N2E2_4945 at 5702.320 kb on - strand, within Pf6N2E2_4945 at 5702.427 kb on + strand at 5702.427 kb on + strand at 5702.428 kb on - strand at 5702.428 kb on - strand at 5702.428 kb on - strand at 5702.428 kb on - strand at 5702.456 kb on - strand at 5702.526 kb on + strand, within Pf6N2E2_4946 at 5702.526 kb on + strand, within Pf6N2E2_4946 at 5702.527 kb on - strand, within Pf6N2E2_4946 at 5702.527 kb on - strand, within Pf6N2E2_4946 at 5702.527 kb on - strand, within Pf6N2E2_4946 at 5702.527 kb on - strand, within Pf6N2E2_4946 at 5702.527 kb on - strand, within Pf6N2E2_4946 at 5702.571 kb on + strand, within Pf6N2E2_4946 at 5702.571 kb on + strand, within Pf6N2E2_4946 at 5702.571 kb on + strand, within Pf6N2E2_4946 at 5702.571 kb on + strand, within Pf6N2E2_4946 at 5702.572 kb on - strand, within Pf6N2E2_4946 at 5702.572 kb on - strand, within Pf6N2E2_4946 at 5702.572 kb on - strand, within Pf6N2E2_4946 at 5702.572 kb on - strand, within Pf6N2E2_4946 at 5702.825 kb on + strand, within Pf6N2E2_4946 at 5702.829 kb on + strand, within Pf6N2E2_4946 at 5702.829 kb on + strand, within Pf6N2E2_4946 at 5702.829 kb on + strand, within Pf6N2E2_4946 at 5702.829 kb on + strand, within Pf6N2E2_4946 at 5702.829 kb on + strand, within Pf6N2E2_4946 at 5702.829 kb on + strand, within Pf6N2E2_4946 at 5702.829 kb on + strand, within Pf6N2E2_4946 at 5702.830 kb on - strand, within Pf6N2E2_4946 at 5702.830 kb on - strand, within Pf6N2E2_4946 at 5702.830 kb on - strand, within Pf6N2E2_4946 at 5702.830 kb on - strand, within Pf6N2E2_4946 at 5702.830 kb on - strand, within Pf6N2E2_4946 at 5702.830 kb on - strand, within Pf6N2E2_4946 at 5702.830 kb on - strand, within Pf6N2E2_4946 at 5702.830 kb on - strand, within Pf6N2E2_4946 at 5702.830 kb on - strand, within Pf6N2E2_4946 at 5702.830 kb on - strand, within Pf6N2E2_4946 at 5702.830 kb on - strand, within Pf6N2E2_4946 at 5702.830 kb on - strand, within Pf6N2E2_4946 at 5702.830 kb on - strand, within Pf6N2E2_4946 at 5702.830 kb on - strand, within Pf6N2E2_4946 at 5702.830 kb on - strand, within Pf6N2E2_4946 at 5702.932 kb on + strand at 5702.932 kb on + strand at 5702.933 kb on - strand at 5702.933 kb on - strand at 5702.933 kb on - strand at 5702.933 kb on - strand at 5702.933 kb on - strand at 5702.933 kb on - strand at 5703.019 kb on + strand, within Pf6N2E2_4947 at 5703.020 kb on - strand, within Pf6N2E2_4947 at 5703.020 kb on - strand, within Pf6N2E2_4947 at 5703.020 kb on - strand, within Pf6N2E2_4947 at 5703.020 kb on - strand, within Pf6N2E2_4947 at 5703.065 kb on + strand, within Pf6N2E2_4947 at 5703.069 kb on + strand, within Pf6N2E2_4947 at 5703.069 kb on + strand, within Pf6N2E2_4947 at 5703.069 kb on + strand, within Pf6N2E2_4947 at 5703.069 kb on + strand, within Pf6N2E2_4947 at 5703.070 kb on - strand, within Pf6N2E2_4947 at 5703.070 kb on - strand, within Pf6N2E2_4947 at 5703.085 kb on + strand, within Pf6N2E2_4947 at 5703.085 kb on + strand, within Pf6N2E2_4947 at 5703.085 kb on + strand, within Pf6N2E2_4947 at 5703.086 kb on - strand, within Pf6N2E2_4947 at 5703.127 kb on + strand, within Pf6N2E2_4947 at 5703.127 kb on + strand, within Pf6N2E2_4947 at 5703.373 kb on + strand, within Pf6N2E2_4947 at 5703.374 kb on - strand, within Pf6N2E2_4947 at 5703.374 kb on - strand, within Pf6N2E2_4947 at 5703.391 kb on + strand, within Pf6N2E2_4947 at 5703.391 kb on + strand, within Pf6N2E2_4947
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 3 mM remove 5,700,798 - -0.9 5,700,798 - -1.2 5,700,798 - -1.7 5,700,798 - +0.2 5,700,798 - -0.9 5,700,798 - -0.0 5,700,925 + Pf6N2E2_4944 0.15 -0.5 5,700,926 - Pf6N2E2_4944 0.15 -1.1 5,700,926 - Pf6N2E2_4944 0.15 -0.5 5,700,929 + Pf6N2E2_4944 0.15 -0.0 5,700,929 + Pf6N2E2_4944 0.15 -0.6 5,700,929 + Pf6N2E2_4944 0.15 -0.4 5,700,929 + Pf6N2E2_4944 0.15 -3.3 5,700,929 + Pf6N2E2_4944 0.15 -0.8 5,700,930 - Pf6N2E2_4944 0.15 -1.0 5,700,930 - Pf6N2E2_4944 0.15 -1.1 5,700,930 - Pf6N2E2_4944 0.15 -0.1 5,700,935 + Pf6N2E2_4944 0.16 -2.0 5,700,935 + Pf6N2E2_4944 0.16 -2.2 5,700,936 - Pf6N2E2_4944 0.16 -2.0 5,700,936 - Pf6N2E2_4944 0.16 +0.7 5,701,030 + Pf6N2E2_4944 0.25 -3.7 5,701,083 + Pf6N2E2_4944 0.30 -0.9 5,701,083 + Pf6N2E2_4944 0.30 -2.7 5,701,083 + Pf6N2E2_4944 0.30 -0.5 5,701,083 + Pf6N2E2_4944 0.30 +0.2 5,701,084 - Pf6N2E2_4944 0.30 +0.3 5,701,084 - Pf6N2E2_4944 0.30 +1.8 5,701,606 - Pf6N2E2_4944 0.81 -1.6 5,701,640 + Pf6N2E2_4944 0.84 +0.3 5,701,640 + Pf6N2E2_4944 0.84 -2.3 5,701,640 + Pf6N2E2_4944 0.84 -1.5 5,701,641 - Pf6N2E2_4944 0.84 -0.9 5,701,669 + Pf6N2E2_4944 0.87 -1.2 5,701,670 - Pf6N2E2_4944 0.87 -0.8 5,701,670 - Pf6N2E2_4944 0.87 -2.7 5,701,757 + +0.7 5,701,757 + +0.9 5,701,757 + -1.7 5,701,757 + -2.0 5,701,757 + +0.6 5,701,757 + -1.3 5,701,757 + -0.3 5,701,758 - +0.7 5,701,758 - +0.4 5,701,758 - +0.1 5,701,758 - -0.8 5,701,802 + -1.0 5,702,025 + Pf6N2E2_4945 0.35 -3.3 5,702,025 + Pf6N2E2_4945 0.35 -1.8 5,702,026 - Pf6N2E2_4945 0.35 -2.8 5,702,026 - Pf6N2E2_4945 0.35 -3.4 5,702,026 - Pf6N2E2_4945 0.35 +1.1 5,702,044 - Pf6N2E2_4945 0.38 -1.6 5,702,044 - Pf6N2E2_4945 0.38 +0.3 5,702,044 - Pf6N2E2_4945 0.38 -0.4 5,702,109 + Pf6N2E2_4945 0.48 -3.5 5,702,110 - Pf6N2E2_4945 0.48 -0.6 5,702,110 - Pf6N2E2_4945 0.48 -0.7 5,702,118 + Pf6N2E2_4945 0.49 -2.6 5,702,118 + Pf6N2E2_4945 0.49 -2.2 5,702,119 - Pf6N2E2_4945 0.49 -0.3 5,702,119 - Pf6N2E2_4945 0.49 -1.2 5,702,119 - Pf6N2E2_4945 0.49 +1.0 5,702,119 - Pf6N2E2_4945 0.49 -1.5 5,702,190 + Pf6N2E2_4945 0.60 -1.4 5,702,212 - Pf6N2E2_4945 0.63 -0.6 5,702,292 + Pf6N2E2_4945 0.76 -0.1 5,702,319 + Pf6N2E2_4945 0.80 -1.3 5,702,320 - Pf6N2E2_4945 0.80 -1.2 5,702,427 + -3.5 5,702,427 + -2.9 5,702,428 - -0.6 5,702,428 - -1.9 5,702,428 - -2.5 5,702,428 - -0.5 5,702,456 - -2.0 5,702,526 + Pf6N2E2_4946 0.13 -1.0 5,702,526 + Pf6N2E2_4946 0.13 +0.3 5,702,527 - Pf6N2E2_4946 0.14 -0.0 5,702,527 - Pf6N2E2_4946 0.14 +0.9 5,702,527 - Pf6N2E2_4946 0.14 -0.2 5,702,527 - Pf6N2E2_4946 0.14 +0.2 5,702,527 - Pf6N2E2_4946 0.14 +0.4 5,702,571 + Pf6N2E2_4946 0.24 -0.5 5,702,571 + Pf6N2E2_4946 0.24 -0.5 5,702,571 + Pf6N2E2_4946 0.24 -3.1 5,702,571 + Pf6N2E2_4946 0.24 +0.4 5,702,572 - Pf6N2E2_4946 0.24 +0.9 5,702,572 - Pf6N2E2_4946 0.24 -0.3 5,702,572 - Pf6N2E2_4946 0.24 -1.0 5,702,572 - Pf6N2E2_4946 0.24 +0.7 5,702,825 + Pf6N2E2_4946 0.83 -2.8 5,702,829 + Pf6N2E2_4946 0.84 -3.0 5,702,829 + Pf6N2E2_4946 0.84 +0.5 5,702,829 + Pf6N2E2_4946 0.84 -3.6 5,702,829 + Pf6N2E2_4946 0.84 -1.4 5,702,829 + Pf6N2E2_4946 0.84 -0.4 5,702,829 + Pf6N2E2_4946 0.84 +0.8 5,702,829 + Pf6N2E2_4946 0.84 -0.6 5,702,830 - Pf6N2E2_4946 0.84 -0.4 5,702,830 - Pf6N2E2_4946 0.84 -0.5 5,702,830 - Pf6N2E2_4946 0.84 -1.2 5,702,830 - Pf6N2E2_4946 0.84 -0.4 5,702,830 - Pf6N2E2_4946 0.84 +0.6 5,702,830 - Pf6N2E2_4946 0.84 -0.4 5,702,830 - Pf6N2E2_4946 0.84 -1.5 5,702,830 - Pf6N2E2_4946 0.84 +0.4 5,702,830 - Pf6N2E2_4946 0.84 +0.8 5,702,830 - Pf6N2E2_4946 0.84 +0.5 5,702,830 - Pf6N2E2_4946 0.84 +0.0 5,702,830 - Pf6N2E2_4946 0.84 -0.4 5,702,830 - Pf6N2E2_4946 0.84 +0.7 5,702,830 - Pf6N2E2_4946 0.84 +0.5 5,702,830 - Pf6N2E2_4946 0.84 -2.6 5,702,932 + -0.6 5,702,932 + -1.5 5,702,933 - +0.0 5,702,933 - +0.8 5,702,933 - +0.6 5,702,933 - +0.6 5,702,933 - -0.2 5,702,933 - -2.5 5,703,019 + Pf6N2E2_4947 0.15 -1.2 5,703,020 - Pf6N2E2_4947 0.15 -0.1 5,703,020 - Pf6N2E2_4947 0.15 -0.3 5,703,020 - Pf6N2E2_4947 0.15 -2.7 5,703,020 - Pf6N2E2_4947 0.15 +1.1 5,703,065 + Pf6N2E2_4947 0.21 +0.2 5,703,069 + Pf6N2E2_4947 0.22 -0.8 5,703,069 + Pf6N2E2_4947 0.22 -2.7 5,703,069 + Pf6N2E2_4947 0.22 -0.9 5,703,069 + Pf6N2E2_4947 0.22 -0.5 5,703,070 - Pf6N2E2_4947 0.22 -0.0 5,703,070 - Pf6N2E2_4947 0.22 +0.4 5,703,085 + Pf6N2E2_4947 0.24 -0.7 5,703,085 + Pf6N2E2_4947 0.24 -2.6 5,703,085 + Pf6N2E2_4947 0.24 +0.4 5,703,086 - Pf6N2E2_4947 0.24 -0.9 5,703,127 + Pf6N2E2_4947 0.30 -0.9 5,703,127 + Pf6N2E2_4947 0.30 +0.7 5,703,373 + Pf6N2E2_4947 0.65 -0.4 5,703,374 - Pf6N2E2_4947 0.65 +1.0 5,703,374 - Pf6N2E2_4947 0.65 +0.2 5,703,391 + Pf6N2E2_4947 0.68 -1.2 5,703,391 + Pf6N2E2_4947 0.68 +0.1
Or see this region's nucleotide sequence