Experiment: copper (II) chloride 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4639 and Pf6N2E2_4640 are separated by 176 nucleotides Pf6N2E2_4640 and Pf6N2E2_4641 are separated by 23 nucleotides Pf6N2E2_4641 and Pf6N2E2_4642 are separated by 87 nucleotides
Pf6N2E2_4639 - Adenosylhomocysteinase (EC 3.3.1.1), at 5,368,863 to 5,370,272
_4639
Pf6N2E2_4640 - hypothetical protein, at 5,370,449 to 5,370,571
_4640
Pf6N2E2_4641 - cytosolic long-chain acyl-CoA thioester hydrolase family protein, at 5,370,595 to 5,370,996
_4641
Pf6N2E2_4642 - Putative transport, at 5,371,084 to 5,371,965
_4642
Position (kb) 5370
5371 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5370.290 kb on - strand at 5370.290 kb on - strand at 5370.290 kb on - strand at 5370.295 kb on - strand at 5370.295 kb on - strand at 5370.295 kb on - strand at 5370.295 kb on - strand at 5370.451 kb on - strand at 5370.453 kb on - strand at 5370.453 kb on - strand at 5370.517 kb on + strand, within Pf6N2E2_4640 at 5370.532 kb on - strand, within Pf6N2E2_4640 at 5370.700 kb on + strand, within Pf6N2E2_4641 at 5370.700 kb on + strand, within Pf6N2E2_4641 at 5370.701 kb on - strand, within Pf6N2E2_4641 at 5370.701 kb on - strand, within Pf6N2E2_4641 at 5370.701 kb on - strand, within Pf6N2E2_4641 at 5370.701 kb on - strand, within Pf6N2E2_4641 at 5370.701 kb on - strand, within Pf6N2E2_4641 at 5370.701 kb on - strand, within Pf6N2E2_4641 at 5370.701 kb on - strand, within Pf6N2E2_4641 at 5370.742 kb on + strand, within Pf6N2E2_4641 at 5370.742 kb on + strand, within Pf6N2E2_4641 at 5370.742 kb on + strand, within Pf6N2E2_4641 at 5370.742 kb on + strand, within Pf6N2E2_4641 at 5370.742 kb on + strand, within Pf6N2E2_4641 at 5370.742 kb on + strand, within Pf6N2E2_4641 at 5370.742 kb on + strand, within Pf6N2E2_4641 at 5370.743 kb on - strand, within Pf6N2E2_4641 at 5370.743 kb on - strand, within Pf6N2E2_4641 at 5370.743 kb on - strand, within Pf6N2E2_4641 at 5370.743 kb on - strand, within Pf6N2E2_4641 at 5370.743 kb on - strand, within Pf6N2E2_4641 at 5370.825 kb on + strand, within Pf6N2E2_4641 at 5370.958 kb on + strand at 5370.958 kb on + strand at 5370.959 kb on - strand at 5370.959 kb on - strand at 5370.959 kb on - strand at 5371.052 kb on + strand at 5371.052 kb on + strand at 5371.052 kb on + strand at 5371.052 kb on + strand at 5371.052 kb on + strand at 5371.052 kb on + strand at 5371.052 kb on + strand at 5371.053 kb on - strand at 5371.053 kb on - strand at 5371.053 kb on - strand at 5371.056 kb on + strand at 5371.056 kb on + strand at 5371.056 kb on + strand at 5371.056 kb on + strand at 5371.056 kb on + strand at 5371.057 kb on - strand at 5371.057 kb on - strand at 5371.057 kb on - strand at 5371.083 kb on + strand at 5371.083 kb on + strand at 5371.084 kb on - strand at 5371.200 kb on + strand, within Pf6N2E2_4642 at 5371.201 kb on - strand, within Pf6N2E2_4642 at 5371.522 kb on + strand, within Pf6N2E2_4642 at 5371.522 kb on + strand, within Pf6N2E2_4642 at 5371.522 kb on + strand, within Pf6N2E2_4642 at 5371.522 kb on + strand, within Pf6N2E2_4642 at 5371.523 kb on - strand, within Pf6N2E2_4642 at 5371.523 kb on - strand, within Pf6N2E2_4642 at 5371.523 kb on - strand, within Pf6N2E2_4642 at 5371.523 kb on - strand, within Pf6N2E2_4642
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 3 mM remove 5,370,290 - +0.6 5,370,290 - -0.9 5,370,290 - +0.3 5,370,295 - +0.2 5,370,295 - +0.3 5,370,295 - +0.1 5,370,295 - +0.1 5,370,451 - -0.9 5,370,453 - +2.5 5,370,453 - +0.3 5,370,517 + Pf6N2E2_4640 0.55 -0.2 5,370,532 - Pf6N2E2_4640 0.67 +1.2 5,370,700 + Pf6N2E2_4641 0.26 -2.1 5,370,700 + Pf6N2E2_4641 0.26 -4.2 5,370,701 - Pf6N2E2_4641 0.26 -2.5 5,370,701 - Pf6N2E2_4641 0.26 -2.4 5,370,701 - Pf6N2E2_4641 0.26 -0.5 5,370,701 - Pf6N2E2_4641 0.26 -1.5 5,370,701 - Pf6N2E2_4641 0.26 -2.2 5,370,701 - Pf6N2E2_4641 0.26 -2.0 5,370,701 - Pf6N2E2_4641 0.26 -1.1 5,370,742 + Pf6N2E2_4641 0.37 -3.1 5,370,742 + Pf6N2E2_4641 0.37 +0.1 5,370,742 + Pf6N2E2_4641 0.37 -2.4 5,370,742 + Pf6N2E2_4641 0.37 -3.8 5,370,742 + Pf6N2E2_4641 0.37 -3.5 5,370,742 + Pf6N2E2_4641 0.37 -3.0 5,370,742 + Pf6N2E2_4641 0.37 -1.9 5,370,743 - Pf6N2E2_4641 0.37 -0.6 5,370,743 - Pf6N2E2_4641 0.37 +0.3 5,370,743 - Pf6N2E2_4641 0.37 -2.1 5,370,743 - Pf6N2E2_4641 0.37 -2.6 5,370,743 - Pf6N2E2_4641 0.37 -1.3 5,370,825 + Pf6N2E2_4641 0.57 -1.4 5,370,958 + +0.4 5,370,958 + -1.7 5,370,959 - -0.6 5,370,959 - -1.2 5,370,959 - +0.9 5,371,052 + -0.0 5,371,052 + +0.1 5,371,052 + -0.5 5,371,052 + +0.1 5,371,052 + +0.2 5,371,052 + -1.0 5,371,052 + +1.9 5,371,053 - +1.9 5,371,053 - +0.6 5,371,053 - -2.4 5,371,056 + -0.9 5,371,056 + +0.2 5,371,056 + -0.4 5,371,056 + +0.1 5,371,056 + +0.6 5,371,057 - +0.4 5,371,057 - +1.0 5,371,057 - +1.8 5,371,083 + -2.1 5,371,083 + +0.6 5,371,084 - +0.2 5,371,200 + Pf6N2E2_4642 0.13 +0.6 5,371,201 - Pf6N2E2_4642 0.13 +1.8 5,371,522 + Pf6N2E2_4642 0.50 -2.1 5,371,522 + Pf6N2E2_4642 0.50 +0.3 5,371,522 + Pf6N2E2_4642 0.50 +0.1 5,371,522 + Pf6N2E2_4642 0.50 +0.6 5,371,523 - Pf6N2E2_4642 0.50 +0.4 5,371,523 - Pf6N2E2_4642 0.50 +0.3 5,371,523 - Pf6N2E2_4642 0.50 -0.6 5,371,523 - Pf6N2E2_4642 0.50 -0.3
Or see this region's nucleotide sequence