Experiment: copper (II) chloride 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4362 and Pf6N2E2_4363 are separated by 167 nucleotides Pf6N2E2_4363 and Pf6N2E2_4364 are separated by 10 nucleotides Pf6N2E2_4364 and Pf6N2E2_4365 are separated by 271 nucleotides
Pf6N2E2_4362 - DNA-directed RNA polymerase omega subunit (EC 2.7.7.6), at 5,093,118 to 5,093,381
_4362
Pf6N2E2_4363 - Guanylate kinase (EC 2.7.4.8), at 5,093,549 to 5,094,169
_4363
Pf6N2E2_4364 - Protein YicC, at 5,094,180 to 5,095,043
_4364
Pf6N2E2_4365 - Ribonuclease PH (EC 2.7.7.56), at 5,095,315 to 5,096,037
_4365
Position (kb)
5094
5095
5096 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 5093.201 kb on - strand, within Pf6N2E2_4362 at 5093.236 kb on - strand, within Pf6N2E2_4362 at 5093.239 kb on - strand, within Pf6N2E2_4362 at 5093.244 kb on - strand, within Pf6N2E2_4362 at 5093.244 kb on - strand, within Pf6N2E2_4362 at 5093.244 kb on - strand, within Pf6N2E2_4362 at 5093.244 kb on - strand, within Pf6N2E2_4362 at 5093.244 kb on - strand, within Pf6N2E2_4362 at 5093.385 kb on - strand at 5093.385 kb on - strand at 5093.508 kb on + strand at 5093.508 kb on + strand at 5093.516 kb on + strand at 5093.516 kb on + strand at 5093.516 kb on + strand at 5093.516 kb on + strand at 5093.516 kb on + strand at 5093.517 kb on - strand at 5093.517 kb on - strand at 5093.517 kb on - strand at 5093.517 kb on - strand at 5093.517 kb on - strand at 5093.570 kb on + strand at 5093.571 kb on - strand at 5093.571 kb on - strand at 5093.571 kb on - strand at 5093.571 kb on - strand at 5094.182 kb on - strand at 5094.182 kb on - strand at 5094.282 kb on - strand, within Pf6N2E2_4364 at 5094.282 kb on - strand, within Pf6N2E2_4364 at 5094.282 kb on - strand, within Pf6N2E2_4364 at 5094.282 kb on - strand, within Pf6N2E2_4364 at 5095.134 kb on + strand at 5095.135 kb on - strand at 5095.254 kb on + strand at 5095.272 kb on + strand at 5095.272 kb on + strand at 5095.272 kb on + strand at 5095.273 kb on - strand at 5095.273 kb on - strand at 5095.273 kb on - strand at 5095.273 kb on - strand at 5095.274 kb on + strand at 5095.274 kb on + strand at 5095.274 kb on + strand at 5095.274 kb on + strand at 5095.307 kb on + strand at 5095.307 kb on + strand at 5095.366 kb on - strand at 5095.375 kb on + strand at 5095.376 kb on - strand at 5095.376 kb on - strand at 5095.401 kb on - strand, within Pf6N2E2_4365 at 5095.401 kb on - strand, within Pf6N2E2_4365 at 5095.420 kb on - strand, within Pf6N2E2_4365 at 5095.420 kb on - strand, within Pf6N2E2_4365 at 5095.654 kb on + strand, within Pf6N2E2_4365 at 5095.654 kb on + strand, within Pf6N2E2_4365 at 5095.654 kb on + strand, within Pf6N2E2_4365 at 5095.655 kb on - strand, within Pf6N2E2_4365 at 5095.655 kb on - strand, within Pf6N2E2_4365 at 5095.655 kb on - strand, within Pf6N2E2_4365 at 5095.819 kb on + strand, within Pf6N2E2_4365 at 5095.819 kb on + strand, within Pf6N2E2_4365 at 5095.819 kb on + strand, within Pf6N2E2_4365 at 5095.820 kb on - strand, within Pf6N2E2_4365 at 5095.820 kb on - strand, within Pf6N2E2_4365 at 5095.820 kb on - strand, within Pf6N2E2_4365 at 5095.820 kb on - strand, within Pf6N2E2_4365 at 5095.820 kb on - strand, within Pf6N2E2_4365 at 5095.820 kb on - strand, within Pf6N2E2_4365 at 5095.849 kb on + strand, within Pf6N2E2_4365 at 5095.849 kb on + strand, within Pf6N2E2_4365 at 5095.849 kb on + strand, within Pf6N2E2_4365 at 5095.850 kb on - strand, within Pf6N2E2_4365 at 5095.850 kb on - strand, within Pf6N2E2_4365 at 5095.850 kb on - strand, within Pf6N2E2_4365 at 5095.886 kb on + strand, within Pf6N2E2_4365 at 5095.886 kb on + strand, within Pf6N2E2_4365 at 5095.887 kb on - strand, within Pf6N2E2_4365 at 5095.887 kb on - strand, within Pf6N2E2_4365 at 5095.969 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 3 mM remove 5,093,201 - Pf6N2E2_4362 0.31 -1.3 5,093,236 - Pf6N2E2_4362 0.45 +0.9 5,093,239 - Pf6N2E2_4362 0.46 -0.0 5,093,244 - Pf6N2E2_4362 0.48 -0.4 5,093,244 - Pf6N2E2_4362 0.48 +1.3 5,093,244 - Pf6N2E2_4362 0.48 -0.4 5,093,244 - Pf6N2E2_4362 0.48 -1.0 5,093,244 - Pf6N2E2_4362 0.48 +0.3 5,093,385 - -0.8 5,093,385 - +1.1 5,093,508 + +2.0 5,093,508 + +1.1 5,093,516 + +0.4 5,093,516 + +1.3 5,093,516 + +0.4 5,093,516 + +1.7 5,093,516 + +1.3 5,093,517 - -0.3 5,093,517 - +0.5 5,093,517 - +0.9 5,093,517 - -0.0 5,093,517 - +1.0 5,093,570 + +1.9 5,093,571 - -0.6 5,093,571 - -0.3 5,093,571 - -2.4 5,093,571 - -2.8 5,094,182 - -0.9 5,094,182 - -0.3 5,094,282 - Pf6N2E2_4364 0.12 +0.4 5,094,282 - Pf6N2E2_4364 0.12 -3.2 5,094,282 - Pf6N2E2_4364 0.12 -1.3 5,094,282 - Pf6N2E2_4364 0.12 -2.6 5,095,134 + -1.1 5,095,135 - +0.8 5,095,254 + +1.1 5,095,272 + -0.1 5,095,272 + -0.1 5,095,272 + -0.3 5,095,273 - +1.8 5,095,273 - +0.2 5,095,273 - +1.5 5,095,273 - +1.6 5,095,274 + +1.7 5,095,274 + +1.4 5,095,274 + +0.4 5,095,274 + +0.8 5,095,307 + +3.5 5,095,307 + +0.5 5,095,366 - +3.4 5,095,375 + +4.0 5,095,376 - +2.5 5,095,376 - +2.8 5,095,401 - Pf6N2E2_4365 0.12 +2.2 5,095,401 - Pf6N2E2_4365 0.12 +3.8 5,095,420 - Pf6N2E2_4365 0.15 +2.7 5,095,420 - Pf6N2E2_4365 0.15 +2.3 5,095,654 + Pf6N2E2_4365 0.47 +1.7 5,095,654 + Pf6N2E2_4365 0.47 +0.6 5,095,654 + Pf6N2E2_4365 0.47 +3.2 5,095,655 - Pf6N2E2_4365 0.47 +1.2 5,095,655 - Pf6N2E2_4365 0.47 +2.2 5,095,655 - Pf6N2E2_4365 0.47 +2.9 5,095,819 + Pf6N2E2_4365 0.70 +2.5 5,095,819 + Pf6N2E2_4365 0.70 +2.3 5,095,819 + Pf6N2E2_4365 0.70 +1.9 5,095,820 - Pf6N2E2_4365 0.70 +1.0 5,095,820 - Pf6N2E2_4365 0.70 +3.1 5,095,820 - Pf6N2E2_4365 0.70 +3.2 5,095,820 - Pf6N2E2_4365 0.70 +3.9 5,095,820 - Pf6N2E2_4365 0.70 +2.5 5,095,820 - Pf6N2E2_4365 0.70 +2.6 5,095,849 + Pf6N2E2_4365 0.74 +2.0 5,095,849 + Pf6N2E2_4365 0.74 +2.3 5,095,849 + Pf6N2E2_4365 0.74 +1.6 5,095,850 - Pf6N2E2_4365 0.74 +1.2 5,095,850 - Pf6N2E2_4365 0.74 +1.9 5,095,850 - Pf6N2E2_4365 0.74 +3.1 5,095,886 + Pf6N2E2_4365 0.79 +3.5 5,095,886 + Pf6N2E2_4365 0.79 -1.8 5,095,887 - Pf6N2E2_4365 0.79 +2.8 5,095,887 - Pf6N2E2_4365 0.79 +2.6 5,095,969 - +2.4
Or see this region's nucleotide sequence