Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_37

Experiment: copper (II) chloride 3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_36 and Pf6N2E2_37 are separated by 233 nucleotidesPf6N2E2_37 and Pf6N2E2_38 are separated by 83 nucleotides Pf6N2E2_36 - Possible oxidoreductase, at 75,774 to 76,604 _36 Pf6N2E2_37 - 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I, at 76,838 to 77,194 _37 Pf6N2E2_38 - FIG00954456: hypothetical protein, at 77,278 to 78,357 _38 Position (kb) 76 77 78Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 76.003 kb on + strand, within Pf6N2E2_36at 76.003 kb on + strand, within Pf6N2E2_36at 76.003 kb on + strand, within Pf6N2E2_36at 76.075 kb on + strand, within Pf6N2E2_36at 76.076 kb on - strand, within Pf6N2E2_36at 76.076 kb on - strand, within Pf6N2E2_36at 76.126 kb on + strand, within Pf6N2E2_36at 76.126 kb on + strand, within Pf6N2E2_36at 76.126 kb on + strand, within Pf6N2E2_36at 76.126 kb on + strand, within Pf6N2E2_36at 76.126 kb on + strand, within Pf6N2E2_36at 76.126 kb on + strand, within Pf6N2E2_36at 76.126 kb on + strand, within Pf6N2E2_36at 76.127 kb on - strand, within Pf6N2E2_36at 76.127 kb on - strand, within Pf6N2E2_36at 76.127 kb on - strand, within Pf6N2E2_36at 76.127 kb on - strand, within Pf6N2E2_36at 76.127 kb on - strand, within Pf6N2E2_36at 76.127 kb on - strand, within Pf6N2E2_36at 76.127 kb on - strand, within Pf6N2E2_36at 76.127 kb on - strand, within Pf6N2E2_36at 76.153 kb on + strand, within Pf6N2E2_36at 76.153 kb on + strand, within Pf6N2E2_36at 76.153 kb on + strand, within Pf6N2E2_36at 76.154 kb on - strand, within Pf6N2E2_36at 76.154 kb on - strand, within Pf6N2E2_36at 76.154 kb on - strand, within Pf6N2E2_36at 76.272 kb on + strand, within Pf6N2E2_36at 76.438 kb on + strand, within Pf6N2E2_36at 76.438 kb on + strand, within Pf6N2E2_36at 76.438 kb on + strand, within Pf6N2E2_36at 76.438 kb on + strand, within Pf6N2E2_36at 76.438 kb on + strand, within Pf6N2E2_36at 76.438 kb on + strand, within Pf6N2E2_36at 76.438 kb on + strand, within Pf6N2E2_36at 76.438 kb on + strand, within Pf6N2E2_36at 76.439 kb on - strand, within Pf6N2E2_36at 76.439 kb on - strand, within Pf6N2E2_36at 76.439 kb on - strand, within Pf6N2E2_36at 76.439 kb on - strand, within Pf6N2E2_36at 76.439 kb on - strand, within Pf6N2E2_36at 76.439 kb on - strand, within Pf6N2E2_36at 76.439 kb on - strand, within Pf6N2E2_36at 76.439 kb on - strand, within Pf6N2E2_36at 76.489 kb on + strand, within Pf6N2E2_36at 76.489 kb on + strand, within Pf6N2E2_36at 76.489 kb on + strand, within Pf6N2E2_36at 76.490 kb on - strand, within Pf6N2E2_36at 76.490 kb on - strand, within Pf6N2E2_36at 76.576 kb on + strandat 76.577 kb on - strandat 76.577 kb on - strandat 76.644 kb on + strandat 76.645 kb on - strandat 76.645 kb on - strandat 76.739 kb on + strandat 76.739 kb on + strandat 76.740 kb on - strandat 76.851 kb on + strandat 76.851 kb on + strandat 76.852 kb on - strandat 76.852 kb on - strandat 76.852 kb on - strandat 76.852 kb on - strandat 76.852 kb on - strandat 76.986 kb on + strand, within Pf6N2E2_37at 76.986 kb on + strand, within Pf6N2E2_37at 76.986 kb on + strand, within Pf6N2E2_37at 76.986 kb on + strand, within Pf6N2E2_37at 76.987 kb on - strand, within Pf6N2E2_37at 76.987 kb on - strand, within Pf6N2E2_37at 76.987 kb on - strand, within Pf6N2E2_37at 77.007 kb on + strand, within Pf6N2E2_37at 77.209 kb on + strandat 77.209 kb on + strandat 77.210 kb on - strandat 77.242 kb on + strandat 77.243 kb on - strandat 77.280 kb on - strandat 77.376 kb on - strandat 77.422 kb on - strand, within Pf6N2E2_38at 77.459 kb on + strand, within Pf6N2E2_38at 77.460 kb on - strand, within Pf6N2E2_38at 77.597 kb on + strand, within Pf6N2E2_38at 77.598 kb on - strand, within Pf6N2E2_38at 77.616 kb on - strand, within Pf6N2E2_38at 77.639 kb on + strand, within Pf6N2E2_38at 78.065 kb on + strand, within Pf6N2E2_38at 78.065 kb on + strand, within Pf6N2E2_38at 78.065 kb on + strand, within Pf6N2E2_38at 78.065 kb on + strand, within Pf6N2E2_38at 78.065 kb on + strand, within Pf6N2E2_38at 78.065 kb on + strand, within Pf6N2E2_38at 78.065 kb on + strand, within Pf6N2E2_38at 78.066 kb on - strand, within Pf6N2E2_38at 78.066 kb on - strand, within Pf6N2E2_38at 78.066 kb on - strand, within Pf6N2E2_38

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 3 mM
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76,003 + Pf6N2E2_36 0.28 +0.1
76,003 + Pf6N2E2_36 0.28 -0.6
76,003 + Pf6N2E2_36 0.28 -0.9
76,075 + Pf6N2E2_36 0.36 -1.2
76,076 - Pf6N2E2_36 0.36 +0.8
76,076 - Pf6N2E2_36 0.36 +1.0
76,126 + Pf6N2E2_36 0.42 +0.2
76,126 + Pf6N2E2_36 0.42 -3.0
76,126 + Pf6N2E2_36 0.42 +0.4
76,126 + Pf6N2E2_36 0.42 -1.8
76,126 + Pf6N2E2_36 0.42 -0.8
76,126 + Pf6N2E2_36 0.42 +0.6
76,126 + Pf6N2E2_36 0.42 +0.2
76,127 - Pf6N2E2_36 0.42 -0.7
76,127 - Pf6N2E2_36 0.42 -0.8
76,127 - Pf6N2E2_36 0.42 +0.2
76,127 - Pf6N2E2_36 0.42 +1.1
76,127 - Pf6N2E2_36 0.42 -1.3
76,127 - Pf6N2E2_36 0.42 +1.9
76,127 - Pf6N2E2_36 0.42 +1.0
76,127 - Pf6N2E2_36 0.42 +0.7
76,153 + Pf6N2E2_36 0.46 -2.1
76,153 + Pf6N2E2_36 0.46 +0.1
76,153 + Pf6N2E2_36 0.46 +0.6
76,154 - Pf6N2E2_36 0.46 +0.2
76,154 - Pf6N2E2_36 0.46 +0.4
76,154 - Pf6N2E2_36 0.46 -0.4
76,272 + Pf6N2E2_36 0.60 -2.1
76,438 + Pf6N2E2_36 0.80 -2.3
76,438 + Pf6N2E2_36 0.80 -0.4
76,438 + Pf6N2E2_36 0.80 +0.4
76,438 + Pf6N2E2_36 0.80 +0.0
76,438 + Pf6N2E2_36 0.80 -0.1
76,438 + Pf6N2E2_36 0.80 +0.6
76,438 + Pf6N2E2_36 0.80 +0.3
76,438 + Pf6N2E2_36 0.80 -1.7
76,439 - Pf6N2E2_36 0.80 +0.4
76,439 - Pf6N2E2_36 0.80 -1.1
76,439 - Pf6N2E2_36 0.80 +0.1
76,439 - Pf6N2E2_36 0.80 -0.5
76,439 - Pf6N2E2_36 0.80 -1.6
76,439 - Pf6N2E2_36 0.80 +0.3
76,439 - Pf6N2E2_36 0.80 -0.4
76,439 - Pf6N2E2_36 0.80 +1.3
76,489 + Pf6N2E2_36 0.86 +1.5
76,489 + Pf6N2E2_36 0.86 -0.6
76,489 + Pf6N2E2_36 0.86 -0.0
76,490 - Pf6N2E2_36 0.86 -0.2
76,490 - Pf6N2E2_36 0.86 -0.8
76,576 + -0.2
76,577 - +0.1
76,577 - -1.1
76,644 + -0.9
76,645 - -0.4
76,645 - +1.5
76,739 + +1.0
76,739 + -0.7
76,740 - -0.6
76,851 + -2.9
76,851 + -1.0
76,852 - -0.3
76,852 - -1.2
76,852 - -1.6
76,852 - +0.5
76,852 - -1.4
76,986 + Pf6N2E2_37 0.41 -3.7
76,986 + Pf6N2E2_37 0.41 -0.4
76,986 + Pf6N2E2_37 0.41 -2.3
76,986 + Pf6N2E2_37 0.41 +0.7
76,987 - Pf6N2E2_37 0.42 -0.0
76,987 - Pf6N2E2_37 0.42 -3.5
76,987 - Pf6N2E2_37 0.42 -1.0
77,007 + Pf6N2E2_37 0.47 -0.4
77,209 + -0.3
77,209 + -1.4
77,210 - -0.2
77,242 + -0.6
77,243 - -0.1
77,280 - +0.5
77,376 - -0.6
77,422 - Pf6N2E2_38 0.13 +0.1
77,459 + Pf6N2E2_38 0.17 -1.4
77,460 - Pf6N2E2_38 0.17 +0.3
77,597 + Pf6N2E2_38 0.30 -0.1
77,598 - Pf6N2E2_38 0.30 +0.6
77,616 - Pf6N2E2_38 0.31 +1.1
77,639 + Pf6N2E2_38 0.33 +0.7
78,065 + Pf6N2E2_38 0.73 -1.4
78,065 + Pf6N2E2_38 0.73 +0.8
78,065 + Pf6N2E2_38 0.73 +1.0
78,065 + Pf6N2E2_38 0.73 -0.1
78,065 + Pf6N2E2_38 0.73 -0.9
78,065 + Pf6N2E2_38 0.73 +0.2
78,065 + Pf6N2E2_38 0.73 +0.7
78,066 - Pf6N2E2_38 0.73 +0.5
78,066 - Pf6N2E2_38 0.73 +0.6
78,066 - Pf6N2E2_38 0.73 +1.1

Or see this region's nucleotide sequence