Experiment: copper (II) chloride 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2350 and Pf6N2E2_2351 overlap by 29 nucleotides Pf6N2E2_2351 and Pf6N2E2_2352 are separated by 4 nucleotides Pf6N2E2_2352 and Pf6N2E2_2353 overlap by 4 nucleotides Pf6N2E2_2353 and Pf6N2E2_2354 are separated by 59 nucleotides Pf6N2E2_2354 and Pf6N2E2_2355 are separated by 3 nucleotides
Pf6N2E2_2350 - Oxygen-regulated invasion protein OrgB, at 2,785,994 to 2,786,704
_2350
Pf6N2E2_2351 - Oxygen-regulated invasion protein OrgA, at 2,786,676 to 2,787,224
_2351
Pf6N2E2_2352 - Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ), at 2,787,229 to 2,787,948
_2352
Pf6N2E2_2353 - cell invasion protein - cytoplasmic, at 2,787,945 to 2,788,253
_2353
Pf6N2E2_2354 - MxiH protein; Type III secretion cytoplasmic protein (YscF), at 2,788,313 to 2,788,576
_2354
Pf6N2E2_2355 - MxiG protein; Pathogenicity 1 island effector protein, at 2,788,580 to 2,789,719
_2355
Position (kb)
2787
2788 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2786.920 kb on - strand, within Pf6N2E2_2351 at 2787.023 kb on + strand, within Pf6N2E2_2351 at 2787.023 kb on + strand, within Pf6N2E2_2351 at 2787.024 kb on - strand, within Pf6N2E2_2351 at 2787.024 kb on - strand, within Pf6N2E2_2351 at 2787.026 kb on - strand, within Pf6N2E2_2351 at 2787.026 kb on - strand, within Pf6N2E2_2351 at 2787.026 kb on - strand, within Pf6N2E2_2351 at 2787.132 kb on + strand, within Pf6N2E2_2351 at 2787.133 kb on - strand, within Pf6N2E2_2351 at 2787.133 kb on - strand, within Pf6N2E2_2351 at 2787.193 kb on + strand at 2787.194 kb on - strand at 2787.269 kb on + strand at 2787.413 kb on + strand, within Pf6N2E2_2352 at 2787.557 kb on + strand, within Pf6N2E2_2352 at 2787.558 kb on - strand, within Pf6N2E2_2352 at 2787.635 kb on + strand, within Pf6N2E2_2352 at 2787.636 kb on - strand, within Pf6N2E2_2352 at 2788.024 kb on + strand, within Pf6N2E2_2353 at 2788.024 kb on + strand, within Pf6N2E2_2353 at 2788.024 kb on + strand, within Pf6N2E2_2353 at 2788.025 kb on - strand, within Pf6N2E2_2353 at 2788.025 kb on - strand, within Pf6N2E2_2353 at 2788.056 kb on + strand, within Pf6N2E2_2353 at 2788.056 kb on + strand, within Pf6N2E2_2353 at 2788.056 kb on + strand, within Pf6N2E2_2353 at 2788.056 kb on + strand, within Pf6N2E2_2353 at 2788.057 kb on - strand, within Pf6N2E2_2353 at 2788.057 kb on - strand, within Pf6N2E2_2353 at 2788.253 kb on + strand at 2788.253 kb on + strand at 2788.253 kb on + strand at 2788.253 kb on + strand at 2788.253 kb on + strand at 2788.253 kb on + strand at 2788.253 kb on + strand at 2788.254 kb on - strand at 2788.254 kb on - strand at 2788.254 kb on - strand at 2788.388 kb on + strand, within Pf6N2E2_2354 at 2788.388 kb on + strand, within Pf6N2E2_2354 at 2788.388 kb on + strand, within Pf6N2E2_2354 at 2788.388 kb on + strand, within Pf6N2E2_2354 at 2788.395 kb on + strand, within Pf6N2E2_2354 at 2788.395 kb on + strand, within Pf6N2E2_2354 at 2788.396 kb on - strand, within Pf6N2E2_2354 at 2788.417 kb on - strand, within Pf6N2E2_2354 at 2788.568 kb on - strand at 2788.576 kb on + strand at 2788.576 kb on + strand at 2788.576 kb on + strand at 2788.576 kb on + strand at 2788.576 kb on + strand at 2788.576 kb on + strand at 2788.576 kb on + strand at 2788.577 kb on - strand at 2788.577 kb on - strand at 2788.577 kb on - strand at 2788.577 kb on - strand at 2788.577 kb on - strand at 2788.577 kb on - strand at 2788.577 kb on - strand at 2788.577 kb on - strand at 2788.586 kb on - strand at 2788.586 kb on - strand at 2788.586 kb on - strand at 2788.632 kb on + strand at 2788.632 kb on + strand at 2788.633 kb on - strand at 2788.633 kb on - strand at 2788.704 kb on + strand, within Pf6N2E2_2355 at 2788.704 kb on + strand, within Pf6N2E2_2355 at 2788.705 kb on - strand, within Pf6N2E2_2355 at 2788.740 kb on + strand, within Pf6N2E2_2355 at 2788.741 kb on - strand, within Pf6N2E2_2355 at 2788.741 kb on - strand, within Pf6N2E2_2355
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 3 mM remove 2,786,920 - Pf6N2E2_2351 0.44 -0.9 2,787,023 + Pf6N2E2_2351 0.63 +1.2 2,787,023 + Pf6N2E2_2351 0.63 -0.3 2,787,024 - Pf6N2E2_2351 0.63 -0.0 2,787,024 - Pf6N2E2_2351 0.63 -4.0 2,787,026 - Pf6N2E2_2351 0.64 +2.7 2,787,026 - Pf6N2E2_2351 0.64 +0.2 2,787,026 - Pf6N2E2_2351 0.64 +0.9 2,787,132 + Pf6N2E2_2351 0.83 -1.6 2,787,133 - Pf6N2E2_2351 0.83 -1.0 2,787,133 - Pf6N2E2_2351 0.83 +0.1 2,787,193 + +0.3 2,787,194 - -1.1 2,787,269 + +1.0 2,787,413 + Pf6N2E2_2352 0.26 -0.5 2,787,557 + Pf6N2E2_2352 0.46 -0.0 2,787,558 - Pf6N2E2_2352 0.46 -1.0 2,787,635 + Pf6N2E2_2352 0.56 -3.2 2,787,636 - Pf6N2E2_2352 0.57 -1.3 2,788,024 + Pf6N2E2_2353 0.26 +0.1 2,788,024 + Pf6N2E2_2353 0.26 +0.6 2,788,024 + Pf6N2E2_2353 0.26 -0.9 2,788,025 - Pf6N2E2_2353 0.26 -1.1 2,788,025 - Pf6N2E2_2353 0.26 -0.1 2,788,056 + Pf6N2E2_2353 0.36 -0.6 2,788,056 + Pf6N2E2_2353 0.36 -0.0 2,788,056 + Pf6N2E2_2353 0.36 +1.2 2,788,056 + Pf6N2E2_2353 0.36 -0.3 2,788,057 - Pf6N2E2_2353 0.36 -1.8 2,788,057 - Pf6N2E2_2353 0.36 +0.2 2,788,253 + +0.4 2,788,253 + +0.6 2,788,253 + -0.5 2,788,253 + +1.3 2,788,253 + +0.5 2,788,253 + -1.8 2,788,253 + +0.9 2,788,254 - +0.1 2,788,254 - +1.1 2,788,254 - +0.7 2,788,388 + Pf6N2E2_2354 0.28 -1.5 2,788,388 + Pf6N2E2_2354 0.28 -0.6 2,788,388 + Pf6N2E2_2354 0.28 +0.7 2,788,388 + Pf6N2E2_2354 0.28 -0.7 2,788,395 + Pf6N2E2_2354 0.31 -0.6 2,788,395 + Pf6N2E2_2354 0.31 +0.2 2,788,396 - Pf6N2E2_2354 0.31 -0.5 2,788,417 - Pf6N2E2_2354 0.39 -1.1 2,788,568 - -3.0 2,788,576 + -0.6 2,788,576 + -0.0 2,788,576 + +1.8 2,788,576 + +0.5 2,788,576 + +0.5 2,788,576 + +1.4 2,788,576 + -1.4 2,788,577 - -0.1 2,788,577 - +0.4 2,788,577 - +0.2 2,788,577 - +0.8 2,788,577 - -0.9 2,788,577 - -0.5 2,788,577 - -0.1 2,788,577 - +0.1 2,788,586 - -0.2 2,788,586 - +0.9 2,788,586 - -0.5 2,788,632 + +0.7 2,788,632 + +0.3 2,788,633 - +1.1 2,788,633 - +0.7 2,788,704 + Pf6N2E2_2355 0.11 -0.0 2,788,704 + Pf6N2E2_2355 0.11 -3.6 2,788,705 - Pf6N2E2_2355 0.11 -1.2 2,788,740 + Pf6N2E2_2355 0.14 +0.0 2,788,741 - Pf6N2E2_2355 0.14 -0.0 2,788,741 - Pf6N2E2_2355 0.14 -1.6
Or see this region's nucleotide sequence