Experiment: copper (II) chloride 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1532 and Pf6N2E2_1533 are separated by 28 nucleotides Pf6N2E2_1533 and Pf6N2E2_1534 are separated by 19 nucleotides Pf6N2E2_1534 and Pf6N2E2_1535 overlap by 4 nucleotides Pf6N2E2_1535 and Pf6N2E2_1536 are separated by 13 nucleotides Pf6N2E2_1536 and Pf6N2E2_1537 are separated by 95 nucleotides
Pf6N2E2_1532 - FIG003847: Oxidoreductase (flavoprotein), at 1,792,255 to 1,793,925
_1532
Pf6N2E2_1533 - membrane protein, putative, at 1,793,954 to 1,794,757
_1533
Pf6N2E2_1534 - Probable transmembrane protein, at 1,794,777 to 1,795,235
_1534
Pf6N2E2_1535 - GENE II AND X PROTEINS, at 1,795,232 to 1,795,657
_1535
Pf6N2E2_1536 - Permeases of the major facilitator superfamily, at 1,795,671 to 1,795,859
_1536
Pf6N2E2_1537 - monooxygenase, putative, at 1,795,955 to 1,797,046
_1537
Position (kb) 1794
1795
1796 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1793.808 kb on + strand at 1793.838 kb on + strand at 1793.838 kb on + strand at 1793.838 kb on + strand at 1793.838 kb on + strand at 1793.838 kb on + strand at 1793.839 kb on - strand at 1793.839 kb on - strand at 1793.839 kb on - strand at 1793.863 kb on + strand at 1793.921 kb on + strand at 1793.921 kb on + strand at 1793.921 kb on + strand at 1793.922 kb on - strand at 1793.922 kb on - strand at 1794.024 kb on + strand at 1794.155 kb on + strand, within Pf6N2E2_1533 at 1794.272 kb on + strand, within Pf6N2E2_1533 at 1794.272 kb on + strand, within Pf6N2E2_1533 at 1794.272 kb on + strand, within Pf6N2E2_1533 at 1794.272 kb on + strand, within Pf6N2E2_1533 at 1794.272 kb on + strand, within Pf6N2E2_1533 at 1794.273 kb on - strand at 1794.273 kb on - strand, within Pf6N2E2_1533 at 1794.273 kb on - strand, within Pf6N2E2_1533 at 1794.273 kb on - strand, within Pf6N2E2_1533 at 1794.615 kb on + strand, within Pf6N2E2_1533 at 1794.686 kb on + strand at 1794.687 kb on - strand at 1794.741 kb on + strand at 1794.741 kb on + strand at 1794.772 kb on + strand at 1794.772 kb on + strand at 1794.825 kb on - strand, within Pf6N2E2_1534 at 1794.825 kb on - strand, within Pf6N2E2_1534 at 1795.204 kb on + strand at 1795.204 kb on + strand at 1795.204 kb on + strand at 1795.205 kb on - strand at 1795.709 kb on + strand, within Pf6N2E2_1536 at 1795.709 kb on + strand, within Pf6N2E2_1536 at 1795.710 kb on - strand, within Pf6N2E2_1536 at 1795.710 kb on - strand, within Pf6N2E2_1536 at 1795.730 kb on + strand, within Pf6N2E2_1536 at 1795.730 kb on + strand, within Pf6N2E2_1536 at 1795.732 kb on + strand, within Pf6N2E2_1536 at 1795.732 kb on + strand, within Pf6N2E2_1536 at 1795.733 kb on - strand, within Pf6N2E2_1536 at 1795.799 kb on + strand, within Pf6N2E2_1536 at 1795.821 kb on + strand, within Pf6N2E2_1536 at 1795.821 kb on + strand, within Pf6N2E2_1536 at 1795.821 kb on + strand, within Pf6N2E2_1536 at 1795.864 kb on + strand at 1795.865 kb on - strand at 1795.986 kb on + strand at 1795.986 kb on + strand at 1795.986 kb on + strand at 1795.987 kb on - strand at 1795.987 kb on - strand at 1795.987 kb on - strand at 1796.028 kb on - strand at 1796.050 kb on - strand at 1796.223 kb on - strand, within Pf6N2E2_1537 at 1796.223 kb on - strand, within Pf6N2E2_1537
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 3 mM remove 1,793,808 + +1.0 1,793,838 + +0.3 1,793,838 + -1.0 1,793,838 + +0.5 1,793,838 + -1.3 1,793,838 + +0.6 1,793,839 - -0.1 1,793,839 - +1.3 1,793,839 - -1.0 1,793,863 + +0.9 1,793,921 + +0.0 1,793,921 + -0.9 1,793,921 + -0.3 1,793,922 - +0.4 1,793,922 - +1.1 1,794,024 + -0.2 1,794,155 + Pf6N2E2_1533 0.25 -0.4 1,794,272 + Pf6N2E2_1533 0.40 -1.7 1,794,272 + Pf6N2E2_1533 0.40 +0.6 1,794,272 + Pf6N2E2_1533 0.40 -2.4 1,794,272 + Pf6N2E2_1533 0.40 +1.3 1,794,272 + Pf6N2E2_1533 0.40 -2.6 1,794,273 - +2.8 1,794,273 - Pf6N2E2_1533 0.40 +0.1 1,794,273 - Pf6N2E2_1533 0.40 +1.2 1,794,273 - Pf6N2E2_1533 0.40 +0.0 1,794,615 + Pf6N2E2_1533 0.82 +0.8 1,794,686 + -0.7 1,794,687 - -1.1 1,794,741 + -0.4 1,794,741 + +0.6 1,794,772 + +0.9 1,794,772 + -0.1 1,794,825 - Pf6N2E2_1534 0.10 -1.0 1,794,825 - Pf6N2E2_1534 0.10 -0.7 1,795,204 + +0.1 1,795,204 + -0.4 1,795,204 + -0.3 1,795,205 - +1.6 1,795,709 + Pf6N2E2_1536 0.20 -0.3 1,795,709 + Pf6N2E2_1536 0.20 -1.9 1,795,710 - Pf6N2E2_1536 0.21 -0.5 1,795,710 - Pf6N2E2_1536 0.21 +0.3 1,795,730 + Pf6N2E2_1536 0.31 -2.9 1,795,730 + Pf6N2E2_1536 0.31 -0.1 1,795,732 + Pf6N2E2_1536 0.32 -0.1 1,795,732 + Pf6N2E2_1536 0.32 +1.2 1,795,733 - Pf6N2E2_1536 0.33 +0.7 1,795,799 + Pf6N2E2_1536 0.68 -0.0 1,795,821 + Pf6N2E2_1536 0.79 +0.8 1,795,821 + Pf6N2E2_1536 0.79 +2.1 1,795,821 + Pf6N2E2_1536 0.79 -1.4 1,795,864 + +0.4 1,795,865 - -0.8 1,795,986 + -0.3 1,795,986 + +0.7 1,795,986 + +0.0 1,795,987 - -0.9 1,795,987 - -1.7 1,795,987 - -0.7 1,796,028 - -2.2 1,796,050 - -0.2 1,796,223 - Pf6N2E2_1537 0.25 +1.4 1,796,223 - Pf6N2E2_1537 0.25 +1.1
Or see this region's nucleotide sequence