Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1675

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1674 and Ga0059261_1675 overlap by 20 nucleotidesGa0059261_1675 and Ga0059261_1676 overlap by 4 nucleotidesGa0059261_1676 and Ga0059261_1677 are separated by 48 nucleotides Ga0059261_1674: Ga0059261_1674 - Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase], at 1,775,552 to 1,777,219 _1674 Ga0059261_1675: Ga0059261_1675 - acetylornithine deacetylase (ArgE), at 1,777,200 to 1,778,387 _1675 Ga0059261_1676: Ga0059261_1676 - transcriptional regulator, IclR family, at 1,778,384 to 1,779,151 _1676 Ga0059261_1677: Ga0059261_1677 - Catalytic LigB subunit of aromatic ring-opening dioxygenase, at 1,779,200 to 1,780,222 _1677 Position (kb) 1777 1778 1779Strain fitness (log2 ratio) -2 -1 0 1 2at 1776.277 kb on + strand, within Ga0059261_1674at 1776.278 kb on - strand, within Ga0059261_1674at 1776.278 kb on - strand, within Ga0059261_1674at 1776.278 kb on - strandat 1776.304 kb on + strand, within Ga0059261_1674at 1776.305 kb on - strand, within Ga0059261_1674at 1776.305 kb on - strand, within Ga0059261_1674at 1776.305 kb on - strand, within Ga0059261_1674at 1776.338 kb on + strand, within Ga0059261_1674at 1776.339 kb on - strand, within Ga0059261_1674at 1776.339 kb on - strand, within Ga0059261_1674at 1776.339 kb on - strand, within Ga0059261_1674at 1776.339 kb on - strand, within Ga0059261_1674at 1776.589 kb on + strand, within Ga0059261_1674at 1776.589 kb on + strand, within Ga0059261_1674at 1776.590 kb on - strand, within Ga0059261_1674at 1776.590 kb on - strand, within Ga0059261_1674at 1776.662 kb on + strand, within Ga0059261_1674at 1776.663 kb on - strand, within Ga0059261_1674at 1776.731 kb on + strand, within Ga0059261_1674at 1776.732 kb on - strand, within Ga0059261_1674at 1776.744 kb on - strand, within Ga0059261_1674at 1776.758 kb on + strandat 1776.758 kb on + strand, within Ga0059261_1674at 1776.758 kb on + strand, within Ga0059261_1674at 1776.759 kb on - strand, within Ga0059261_1674at 1776.773 kb on + strand, within Ga0059261_1674at 1776.773 kb on + strand, within Ga0059261_1674at 1776.773 kb on + strand, within Ga0059261_1674at 1776.773 kb on + strand, within Ga0059261_1674at 1776.773 kb on + strand, within Ga0059261_1674at 1776.773 kb on + strand, within Ga0059261_1674at 1776.773 kb on + strand, within Ga0059261_1674at 1776.773 kb on + strand, within Ga0059261_1674at 1776.773 kb on + strand, within Ga0059261_1674at 1776.773 kb on + strandat 1776.774 kb on - strand, within Ga0059261_1674at 1776.774 kb on - strand, within Ga0059261_1674at 1776.774 kb on - strand, within Ga0059261_1674at 1776.774 kb on - strand, within Ga0059261_1674at 1776.774 kb on - strand, within Ga0059261_1674at 1776.789 kb on - strand, within Ga0059261_1674at 1776.789 kb on - strand, within Ga0059261_1674at 1776.789 kb on - strand, within Ga0059261_1674at 1776.806 kb on + strand, within Ga0059261_1674at 1776.807 kb on - strand, within Ga0059261_1674at 1776.890 kb on + strand, within Ga0059261_1674at 1776.890 kb on + strand, within Ga0059261_1674at 1776.890 kb on + strand, within Ga0059261_1674at 1776.890 kb on + strand, within Ga0059261_1674at 1776.890 kb on + strand, within Ga0059261_1674at 1776.890 kb on + strand, within Ga0059261_1674at 1776.890 kb on + strand, within Ga0059261_1674at 1776.890 kb on + strand, within Ga0059261_1674at 1776.890 kb on + strand, within Ga0059261_1674at 1776.890 kb on + strand, within Ga0059261_1674at 1776.890 kb on + strand, within Ga0059261_1674at 1776.891 kb on - strand, within Ga0059261_1674at 1776.891 kb on - strand, within Ga0059261_1674at 1776.891 kb on - strand, within Ga0059261_1674at 1776.891 kb on - strand, within Ga0059261_1674at 1776.891 kb on - strand, within Ga0059261_1674at 1776.891 kb on - strand, within Ga0059261_1674at 1776.891 kb on - strand, within Ga0059261_1674at 1776.891 kb on - strand, within Ga0059261_1674at 1776.891 kb on - strand, within Ga0059261_1674at 1776.891 kb on - strand, within Ga0059261_1674at 1776.891 kb on - strand, within Ga0059261_1674at 1776.891 kb on - strand, within Ga0059261_1674at 1776.998 kb on + strand, within Ga0059261_1674at 1776.998 kb on + strand, within Ga0059261_1674at 1776.998 kb on + strand, within Ga0059261_1674at 1776.998 kb on + strand, within Ga0059261_1674at 1776.999 kb on - strand, within Ga0059261_1674at 1776.999 kb on - strand, within Ga0059261_1674at 1777.323 kb on + strand, within Ga0059261_1675at 1777.323 kb on + strand, within Ga0059261_1675at 1777.323 kb on + strand, within Ga0059261_1675at 1777.323 kb on + strand, within Ga0059261_1675at 1777.324 kb on - strand, within Ga0059261_1675at 1777.436 kb on + strand, within Ga0059261_1675at 1777.437 kb on - strand, within Ga0059261_1675at 1777.437 kb on - strand, within Ga0059261_1675at 1777.437 kb on - strand, within Ga0059261_1675at 1777.437 kb on - strand, within Ga0059261_1675at 1777.437 kb on - strand, within Ga0059261_1675at 1777.759 kb on - strand, within Ga0059261_1675at 1777.759 kb on - strand, within Ga0059261_1675at 1777.759 kb on - strand, within Ga0059261_1675at 1777.806 kb on + strand, within Ga0059261_1675at 1777.807 kb on - strand, within Ga0059261_1675at 1777.827 kb on + strand, within Ga0059261_1675at 1777.828 kb on - strand, within Ga0059261_1675at 1777.828 kb on - strand, within Ga0059261_1675at 1777.828 kb on - strand, within Ga0059261_1675at 1777.902 kb on + strand, within Ga0059261_1675at 1778.049 kb on + strand, within Ga0059261_1675at 1778.049 kb on + strand, within Ga0059261_1675at 1778.049 kb on + strand, within Ga0059261_1675at 1778.049 kb on + strand, within Ga0059261_1675at 1778.049 kb on + strandat 1778.049 kb on + strand, within Ga0059261_1675at 1778.049 kb on + strand, within Ga0059261_1675at 1778.049 kb on + strandat 1778.049 kb on + strand, within Ga0059261_1675at 1778.050 kb on - strand, within Ga0059261_1675at 1778.050 kb on - strand, within Ga0059261_1675at 1778.050 kb on - strand, within Ga0059261_1675at 1778.050 kb on - strand, within Ga0059261_1675at 1778.052 kb on - strand, within Ga0059261_1675at 1778.436 kb on + strandat 1778.436 kb on + strandat 1778.436 kb on + strandat 1778.436 kb on + strandat 1778.437 kb on - strandat 1778.461 kb on + strand, within Ga0059261_1676at 1778.461 kb on + strand, within Ga0059261_1676at 1778.462 kb on - strand, within Ga0059261_1676at 1778.463 kb on + strand, within Ga0059261_1676at 1778.463 kb on + strand, within Ga0059261_1676at 1778.464 kb on - strand, within Ga0059261_1676at 1778.464 kb on - strand, within Ga0059261_1676at 1778.464 kb on - strand, within Ga0059261_1676at 1778.464 kb on - strand, within Ga0059261_1676at 1778.464 kb on - strand, within Ga0059261_1676at 1778.536 kb on + strand, within Ga0059261_1676at 1778.536 kb on + strand, within Ga0059261_1676at 1778.625 kb on + strand, within Ga0059261_1676at 1778.625 kb on + strand, within Ga0059261_1676at 1778.626 kb on - strand, within Ga0059261_1676at 1778.626 kb on - strand, within Ga0059261_1676at 1778.626 kb on - strand, within Ga0059261_1676at 1778.626 kb on - strand, within Ga0059261_1676at 1778.626 kb on - strand, within Ga0059261_1676at 1778.626 kb on - strand, within Ga0059261_1676at 1778.679 kb on + strand, within Ga0059261_1676at 1778.682 kb on + strand, within Ga0059261_1676at 1778.682 kb on + strand, within Ga0059261_1676at 1778.683 kb on - strand, within Ga0059261_1676at 1778.683 kb on - strand, within Ga0059261_1676at 1778.683 kb on - strand, within Ga0059261_1676at 1778.683 kb on - strand, within Ga0059261_1676at 1778.883 kb on + strand, within Ga0059261_1676at 1778.884 kb on - strand, within Ga0059261_1676at 1778.928 kb on + strand, within Ga0059261_1676at 1778.928 kb on + strand, within Ga0059261_1676at 1778.928 kb on + strand, within Ga0059261_1676at 1778.928 kb on + strand, within Ga0059261_1676at 1778.929 kb on - strand, within Ga0059261_1676at 1778.929 kb on - strand, within Ga0059261_1676at 1778.929 kb on - strand, within Ga0059261_1676at 1778.929 kb on - strand, within Ga0059261_1676at 1778.929 kb on - strand, within Ga0059261_1676at 1779.162 kb on + strandat 1779.163 kb on - strandat 1779.198 kb on + strandat 1779.198 kb on + strandat 1779.199 kb on - strandat 1779.199 kb on - strandat 1779.252 kb on + strandat 1779.264 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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1,776,277 + Ga0059261_1674 0.43 -0.2
1,776,278 - Ga0059261_1674 0.44 -1.7
1,776,278 - Ga0059261_1674 0.44 +0.2
1,776,278 - -0.0
1,776,304 + Ga0059261_1674 0.45 -0.7
1,776,305 - Ga0059261_1674 0.45 -0.2
1,776,305 - Ga0059261_1674 0.45 -2.7
1,776,305 - Ga0059261_1674 0.45 -0.0
1,776,338 + Ga0059261_1674 0.47 -2.2
1,776,339 - Ga0059261_1674 0.47 +0.7
1,776,339 - Ga0059261_1674 0.47 +1.3
1,776,339 - Ga0059261_1674 0.47 +0.4
1,776,339 - Ga0059261_1674 0.47 -1.0
1,776,589 + Ga0059261_1674 0.62 -0.8
1,776,589 + Ga0059261_1674 0.62 +0.2
1,776,590 - Ga0059261_1674 0.62 -0.1
1,776,590 - Ga0059261_1674 0.62 -0.4
1,776,662 + Ga0059261_1674 0.67 -0.0
1,776,663 - Ga0059261_1674 0.67 +0.5
1,776,731 + Ga0059261_1674 0.71 -1.8
1,776,732 - Ga0059261_1674 0.71 +0.6
1,776,744 - Ga0059261_1674 0.71 -0.7
1,776,758 + +1.4
1,776,758 + Ga0059261_1674 0.72 +0.1
1,776,758 + Ga0059261_1674 0.72 +0.2
1,776,759 - Ga0059261_1674 0.72 +1.7
1,776,773 + Ga0059261_1674 0.73 -0.0
1,776,773 + Ga0059261_1674 0.73 +0.5
1,776,773 + Ga0059261_1674 0.73 +0.4
1,776,773 + Ga0059261_1674 0.73 -1.0
1,776,773 + Ga0059261_1674 0.73 -0.2
1,776,773 + Ga0059261_1674 0.73 -0.5
1,776,773 + Ga0059261_1674 0.73 -0.2
1,776,773 + Ga0059261_1674 0.73 +0.1
1,776,773 + Ga0059261_1674 0.73 +0.1
1,776,773 + -0.4
1,776,774 - Ga0059261_1674 0.73 -1.0
1,776,774 - Ga0059261_1674 0.73 +0.4
1,776,774 - Ga0059261_1674 0.73 +0.7
1,776,774 - Ga0059261_1674 0.73 +0.5
1,776,774 - Ga0059261_1674 0.73 -0.2
1,776,789 - Ga0059261_1674 0.74 +0.8
1,776,789 - Ga0059261_1674 0.74 -0.2
1,776,789 - Ga0059261_1674 0.74 +0.7
1,776,806 + Ga0059261_1674 0.75 +1.1
1,776,807 - Ga0059261_1674 0.75 +1.2
1,776,890 + Ga0059261_1674 0.80 +0.9
1,776,890 + Ga0059261_1674 0.80 -1.0
1,776,890 + Ga0059261_1674 0.80 +0.3
1,776,890 + Ga0059261_1674 0.80 +0.6
1,776,890 + Ga0059261_1674 0.80 -0.4
1,776,890 + Ga0059261_1674 0.80 +0.7
1,776,890 + Ga0059261_1674 0.80 +0.3
1,776,890 + Ga0059261_1674 0.80 +1.4
1,776,890 + Ga0059261_1674 0.80 +0.1
1,776,890 + Ga0059261_1674 0.80 -0.6
1,776,890 + Ga0059261_1674 0.80 +0.4
1,776,891 - Ga0059261_1674 0.80 -0.5
1,776,891 - Ga0059261_1674 0.80 +0.8
1,776,891 - Ga0059261_1674 0.80 -0.3
1,776,891 - Ga0059261_1674 0.80 -1.6
1,776,891 - Ga0059261_1674 0.80 +0.2
1,776,891 - Ga0059261_1674 0.80 +0.4
1,776,891 - Ga0059261_1674 0.80 +0.3
1,776,891 - Ga0059261_1674 0.80 +0.1
1,776,891 - Ga0059261_1674 0.80 +0.1
1,776,891 - Ga0059261_1674 0.80 -0.2
1,776,891 - Ga0059261_1674 0.80 -0.0
1,776,891 - Ga0059261_1674 0.80 +0.5
1,776,998 + Ga0059261_1674 0.87 -1.5
1,776,998 + Ga0059261_1674 0.87 -1.6
1,776,998 + Ga0059261_1674 0.87 +0.4
1,776,998 + Ga0059261_1674 0.87 -0.5
1,776,999 - Ga0059261_1674 0.87 +1.4
1,776,999 - Ga0059261_1674 0.87 +0.8
1,777,323 + Ga0059261_1675 0.10 -0.1
1,777,323 + Ga0059261_1675 0.10 -0.2
1,777,323 + Ga0059261_1675 0.10 -0.1
1,777,323 + Ga0059261_1675 0.10 -0.4
1,777,324 - Ga0059261_1675 0.10 -0.1
1,777,436 + Ga0059261_1675 0.20 -0.1
1,777,437 - Ga0059261_1675 0.20 +0.7
1,777,437 - Ga0059261_1675 0.20 -0.6
1,777,437 - Ga0059261_1675 0.20 -1.0
1,777,437 - Ga0059261_1675 0.20 -0.3
1,777,437 - Ga0059261_1675 0.20 +0.1
1,777,759 - Ga0059261_1675 0.47 -1.0
1,777,759 - Ga0059261_1675 0.47 +0.1
1,777,759 - Ga0059261_1675 0.47 +0.3
1,777,806 + Ga0059261_1675 0.51 +1.5
1,777,807 - Ga0059261_1675 0.51 -0.4
1,777,827 + Ga0059261_1675 0.53 +0.1
1,777,828 - Ga0059261_1675 0.53 -0.4
1,777,828 - Ga0059261_1675 0.53 +1.0
1,777,828 - Ga0059261_1675 0.53 +1.1
1,777,902 + Ga0059261_1675 0.59 +0.3
1,778,049 + Ga0059261_1675 0.71 -0.2
1,778,049 + Ga0059261_1675 0.71 -0.7
1,778,049 + Ga0059261_1675 0.71 -0.8
1,778,049 + Ga0059261_1675 0.71 -0.2
1,778,049 + +0.6
1,778,049 + Ga0059261_1675 0.71 -1.7
1,778,049 + Ga0059261_1675 0.71 -0.1
1,778,049 + -0.0
1,778,049 + Ga0059261_1675 0.71 -0.6
1,778,050 - Ga0059261_1675 0.72 -0.5
1,778,050 - Ga0059261_1675 0.72 -0.4
1,778,050 - Ga0059261_1675 0.72 +0.4
1,778,050 - Ga0059261_1675 0.72 -1.0
1,778,052 - Ga0059261_1675 0.72 -0.3
1,778,436 + -1.2
1,778,436 + -0.6
1,778,436 + -0.6
1,778,436 + +0.4
1,778,437 - +0.6
1,778,461 + Ga0059261_1676 0.10 +1.4
1,778,461 + Ga0059261_1676 0.10 -0.0
1,778,462 - Ga0059261_1676 0.10 +0.2
1,778,463 + Ga0059261_1676 0.10 +1.1
1,778,463 + Ga0059261_1676 0.10 -0.5
1,778,464 - Ga0059261_1676 0.10 -0.0
1,778,464 - Ga0059261_1676 0.10 +1.0
1,778,464 - Ga0059261_1676 0.10 -0.1
1,778,464 - Ga0059261_1676 0.10 +1.0
1,778,464 - Ga0059261_1676 0.10 -0.8
1,778,536 + Ga0059261_1676 0.20 -0.1
1,778,536 + Ga0059261_1676 0.20 -0.1
1,778,625 + Ga0059261_1676 0.31 -0.8
1,778,625 + Ga0059261_1676 0.31 +0.9
1,778,626 - Ga0059261_1676 0.32 -0.4
1,778,626 - Ga0059261_1676 0.32 -1.3
1,778,626 - Ga0059261_1676 0.32 +0.5
1,778,626 - Ga0059261_1676 0.32 -0.5
1,778,626 - Ga0059261_1676 0.32 -0.3
1,778,626 - Ga0059261_1676 0.32 -0.3
1,778,679 + Ga0059261_1676 0.38 +0.0
1,778,682 + Ga0059261_1676 0.39 -0.6
1,778,682 + Ga0059261_1676 0.39 -0.0
1,778,683 - Ga0059261_1676 0.39 +0.7
1,778,683 - Ga0059261_1676 0.39 -0.5
1,778,683 - Ga0059261_1676 0.39 -1.1
1,778,683 - Ga0059261_1676 0.39 +1.0
1,778,883 + Ga0059261_1676 0.65 -0.4
1,778,884 - Ga0059261_1676 0.65 +0.6
1,778,928 + Ga0059261_1676 0.71 -1.5
1,778,928 + Ga0059261_1676 0.71 -1.4
1,778,928 + Ga0059261_1676 0.71 -2.7
1,778,928 + Ga0059261_1676 0.71 -0.4
1,778,929 - Ga0059261_1676 0.71 -0.1
1,778,929 - Ga0059261_1676 0.71 -0.9
1,778,929 - Ga0059261_1676 0.71 -0.9
1,778,929 - Ga0059261_1676 0.71 -0.1
1,778,929 - Ga0059261_1676 0.71 +1.2
1,779,162 + +2.7
1,779,163 - +0.2
1,779,198 + +0.0
1,779,198 + -0.4
1,779,199 - +0.2
1,779,199 - -0.4
1,779,252 + -0.7
1,779,264 + -1.1

Or see this region's nucleotide sequence