Experiment: PYE with copper (II) chloride 0.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00785 and CCNA_03938 are separated by 183 nucleotides CCNA_03938 and CCNA_00787 are separated by 111 nucleotides
CCNA_00785: CCNA_00785 - tRNA methyltransferase/FAD-dependent oxidoreductase MnmC, at 848,157 to 849,932
_00785
CCNA_03938: CCNA_03938 - hypothetical protein, at 850,116 to 850,442
_03938
CCNA_00787: CCNA_00787 - chemotaxis motA protein, at 850,554 to 851,420
_00787
Position (kb) 850
851 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 849.140 kb on - strand, within CCNA_00785 at 849.205 kb on + strand, within CCNA_00785 at 849.243 kb on - strand, within CCNA_00785 at 849.248 kb on + strand, within CCNA_00785 at 849.257 kb on - strand, within CCNA_00785 at 849.302 kb on - strand, within CCNA_00785 at 849.360 kb on + strand, within CCNA_00785 at 849.417 kb on + strand, within CCNA_00785 at 849.425 kb on - strand, within CCNA_00785 at 849.425 kb on - strand, within CCNA_00785 at 849.425 kb on - strand, within CCNA_00785 at 849.427 kb on + strand, within CCNA_00785 at 849.489 kb on - strand, within CCNA_00785 at 849.489 kb on - strand, within CCNA_00785 at 849.507 kb on + strand, within CCNA_00785 at 849.507 kb on + strand, within CCNA_00785 at 849.507 kb on + strand, within CCNA_00785 at 849.507 kb on + strand, within CCNA_00785 at 849.507 kb on + strand, within CCNA_00785 at 849.507 kb on + strand, within CCNA_00785 at 849.507 kb on + strand, within CCNA_00785 at 849.515 kb on - strand, within CCNA_00785 at 849.515 kb on - strand, within CCNA_00785 at 849.515 kb on - strand, within CCNA_00785 at 849.515 kb on - strand, within CCNA_00785 at 849.515 kb on - strand, within CCNA_00785 at 849.515 kb on - strand, within CCNA_00785 at 849.515 kb on - strand, within CCNA_00785 at 849.515 kb on - strand, within CCNA_00785 at 849.515 kb on - strand, within CCNA_00785 at 849.515 kb on - strand, within CCNA_00785 at 849.542 kb on + strand, within CCNA_00785 at 849.542 kb on + strand, within CCNA_00785 at 849.550 kb on - strand, within CCNA_00785 at 849.550 kb on - strand, within CCNA_00785 at 849.592 kb on - strand, within CCNA_00785 at 849.602 kb on + strand, within CCNA_00785 at 849.602 kb on + strand, within CCNA_00785 at 849.610 kb on - strand, within CCNA_00785 at 849.610 kb on - strand, within CCNA_00785 at 849.624 kb on - strand, within CCNA_00785 at 849.624 kb on - strand, within CCNA_00785 at 849.661 kb on + strand, within CCNA_00785 at 849.669 kb on + strand, within CCNA_00785 at 849.677 kb on - strand, within CCNA_00785 at 849.729 kb on + strand, within CCNA_00785 at 849.729 kb on + strand, within CCNA_00785 at 849.729 kb on + strand, within CCNA_00785 at 849.737 kb on - strand, within CCNA_00785 at 849.737 kb on - strand, within CCNA_00785 at 849.761 kb on + strand at 849.761 kb on + strand at 849.769 kb on - strand at 849.857 kb on - strand at 849.867 kb on + strand at 849.870 kb on - strand at 849.872 kb on - strand at 849.879 kb on - strand at 849.880 kb on - strand at 849.880 kb on - strand at 849.928 kb on + strand at 849.935 kb on + strand at 849.943 kb on - strand at 849.948 kb on + strand at 849.948 kb on + strand at 849.956 kb on - strand at 849.956 kb on - strand at 849.966 kb on - strand at 849.966 kb on - strand at 849.977 kb on + strand at 849.989 kb on + strand at 850.035 kb on - strand at 850.035 kb on - strand at 850.037 kb on + strand at 850.037 kb on + strand at 850.045 kb on - strand at 850.045 kb on - strand at 850.057 kb on - strand at 850.057 kb on - strand at 850.057 kb on - strand at 850.057 kb on - strand at 850.062 kb on - strand at 850.062 kb on - strand at 850.080 kb on + strand at 850.081 kb on + strand at 850.089 kb on - strand at 850.099 kb on - strand at 850.126 kb on + strand at 850.126 kb on + strand at 850.134 kb on - strand at 850.158 kb on - strand, within CCNA_03938 at 850.273 kb on + strand, within CCNA_03938 at 850.280 kb on - strand, within CCNA_03938 at 850.281 kb on - strand, within CCNA_03938 at 850.314 kb on - strand, within CCNA_03938 at 850.314 kb on - strand, within CCNA_03938 at 850.321 kb on + strand, within CCNA_03938 at 850.327 kb on + strand, within CCNA_03938 at 850.353 kb on + strand, within CCNA_03938 at 850.391 kb on - strand, within CCNA_03938 at 850.424 kb on + strand at 850.430 kb on + strand at 850.430 kb on + strand at 850.430 kb on + strand at 850.431 kb on + strand at 850.438 kb on + strand at 850.438 kb on - strand at 850.438 kb on - strand at 850.438 kb on - strand at 850.446 kb on - strand at 850.517 kb on - strand at 850.526 kb on + strand at 850.554 kb on - strand at 850.582 kb on + strand at 850.726 kb on + strand, within CCNA_00787 at 850.760 kb on + strand, within CCNA_00787 at 850.761 kb on + strand, within CCNA_00787 at 850.763 kb on - strand, within CCNA_00787 at 850.768 kb on - strand, within CCNA_00787 at 850.768 kb on - strand, within CCNA_00787 at 850.768 kb on - strand, within CCNA_00787 at 850.768 kb on - strand, within CCNA_00787 at 850.769 kb on - strand, within CCNA_00787 at 850.776 kb on - strand, within CCNA_00787 at 850.780 kb on + strand, within CCNA_00787 at 850.826 kb on - strand, within CCNA_00787 at 850.855 kb on - strand, within CCNA_00787 at 850.887 kb on + strand, within CCNA_00787 at 850.887 kb on + strand, within CCNA_00787 at 850.924 kb on - strand, within CCNA_00787 at 850.931 kb on - strand, within CCNA_00787 at 850.931 kb on - strand, within CCNA_00787 at 850.936 kb on - strand, within CCNA_00787 at 850.953 kb on - strand, within CCNA_00787 at 850.981 kb on + strand, within CCNA_00787 at 850.991 kb on + strand, within CCNA_00787 at 850.999 kb on - strand, within CCNA_00787 at 850.999 kb on - strand, within CCNA_00787 at 851.022 kb on - strand, within CCNA_00787 at 851.027 kb on + strand, within CCNA_00787 at 851.033 kb on + strand, within CCNA_00787 at 851.035 kb on - strand, within CCNA_00787 at 851.045 kb on - strand, within CCNA_00787 at 851.077 kb on - strand, within CCNA_00787 at 851.080 kb on + strand, within CCNA_00787 at 851.137 kb on + strand, within CCNA_00787 at 851.137 kb on + strand, within CCNA_00787 at 851.145 kb on - strand, within CCNA_00787 at 851.183 kb on + strand, within CCNA_00787 at 851.183 kb on - strand, within CCNA_00787 at 851.193 kb on + strand, within CCNA_00787 at 851.196 kb on - strand, within CCNA_00787 at 851.196 kb on - strand, within CCNA_00787 at 851.201 kb on + strand, within CCNA_00787 at 851.201 kb on - strand, within CCNA_00787 at 851.201 kb on - strand, within CCNA_00787 at 851.207 kb on + strand, within CCNA_00787 at 851.208 kb on - strand, within CCNA_00787 at 851.243 kb on + strand, within CCNA_00787 at 851.248 kb on + strand, within CCNA_00787 at 851.251 kb on - strand, within CCNA_00787 at 851.256 kb on - strand, within CCNA_00787 at 851.309 kb on + strand, within CCNA_00787 at 851.337 kb on - strand at 851.350 kb on - strand at 851.373 kb on + strand at 851.373 kb on + strand at 851.381 kb on - strand at 851.399 kb on - strand at 851.419 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with copper (II) chloride 0.25 mM remove 849,140 - CCNA_00785 0.55 +0.3 849,205 + CCNA_00785 0.59 -1.0 849,243 - CCNA_00785 0.61 +2.4 849,248 + CCNA_00785 0.61 +0.6 849,257 - CCNA_00785 0.62 -0.2 849,302 - CCNA_00785 0.64 +0.2 849,360 + CCNA_00785 0.68 -0.5 849,417 + CCNA_00785 0.71 +0.2 849,425 - CCNA_00785 0.71 -0.4 849,425 - CCNA_00785 0.71 +0.3 849,425 - CCNA_00785 0.71 +1.7 849,427 + CCNA_00785 0.72 +1.0 849,489 - CCNA_00785 0.75 +1.6 849,489 - CCNA_00785 0.75 +0.2 849,507 + CCNA_00785 0.76 -1.4 849,507 + CCNA_00785 0.76 +0.6 849,507 + CCNA_00785 0.76 -0.8 849,507 + CCNA_00785 0.76 +1.9 849,507 + CCNA_00785 0.76 +1.4 849,507 + CCNA_00785 0.76 +0.4 849,507 + CCNA_00785 0.76 +0.2 849,515 - CCNA_00785 0.76 +1.0 849,515 - CCNA_00785 0.76 +1.2 849,515 - CCNA_00785 0.76 +0.1 849,515 - CCNA_00785 0.76 -0.0 849,515 - CCNA_00785 0.76 +1.1 849,515 - CCNA_00785 0.76 -0.1 849,515 - CCNA_00785 0.76 -0.5 849,515 - CCNA_00785 0.76 +1.3 849,515 - CCNA_00785 0.76 -1.2 849,515 - CCNA_00785 0.76 +0.6 849,542 + CCNA_00785 0.78 +1.3 849,542 + CCNA_00785 0.78 +1.3 849,550 - CCNA_00785 0.78 +0.7 849,550 - CCNA_00785 0.78 -1.1 849,592 - CCNA_00785 0.81 +1.2 849,602 + CCNA_00785 0.81 -2.0 849,602 + CCNA_00785 0.81 +0.6 849,610 - CCNA_00785 0.82 +1.2 849,610 - CCNA_00785 0.82 +1.3 849,624 - CCNA_00785 0.83 +0.2 849,624 - CCNA_00785 0.83 +0.7 849,661 + CCNA_00785 0.85 -0.9 849,669 + CCNA_00785 0.85 -0.1 849,677 - CCNA_00785 0.86 +1.4 849,729 + CCNA_00785 0.89 -0.3 849,729 + CCNA_00785 0.89 +2.2 849,729 + CCNA_00785 0.89 -0.8 849,737 - CCNA_00785 0.89 -0.2 849,737 - CCNA_00785 0.89 -0.3 849,761 + -0.2 849,761 + +0.3 849,769 - -0.2 849,857 - +1.4 849,867 + -0.0 849,870 - +0.5 849,872 - +0.8 849,879 - +0.9 849,880 - -1.0 849,880 - +0.3 849,928 + -2.0 849,935 + -0.3 849,943 - -0.4 849,948 + -1.5 849,948 + +0.0 849,956 - +1.2 849,956 - +0.1 849,966 - +0.5 849,966 - +0.6 849,977 + +0.4 849,989 + -0.1 850,035 - +1.9 850,035 - +2.4 850,037 + +2.0 850,037 + +1.8 850,045 - +1.5 850,045 - +2.2 850,057 - +2.2 850,057 - +2.1 850,057 - +2.7 850,057 - +2.5 850,062 - +2.5 850,062 - +1.8 850,080 + +2.6 850,081 + +0.6 850,089 - +3.1 850,099 - +2.2 850,126 + +0.4 850,126 + -1.2 850,134 - +1.8 850,158 - CCNA_03938 0.13 +1.8 850,273 + CCNA_03938 0.48 -0.1 850,280 - CCNA_03938 0.50 +2.1 850,281 - CCNA_03938 0.50 +2.0 850,314 - CCNA_03938 0.61 +2.6 850,314 - CCNA_03938 0.61 +2.3 850,321 + CCNA_03938 0.63 +1.2 850,327 + CCNA_03938 0.65 -1.1 850,353 + CCNA_03938 0.72 -2.8 850,391 - CCNA_03938 0.84 +2.2 850,424 + +2.9 850,430 + -0.6 850,430 + +2.4 850,430 + -1.7 850,431 + -0.4 850,438 + +0.8 850,438 - +2.3 850,438 - +2.8 850,438 - +2.0 850,446 - +4.1 850,517 - +2.5 850,526 + +0.8 850,554 - +0.9 850,582 + -0.1 850,726 + CCNA_00787 0.20 +0.7 850,760 + CCNA_00787 0.24 +1.0 850,761 + CCNA_00787 0.24 -1.1 850,763 - CCNA_00787 0.24 +1.2 850,768 - CCNA_00787 0.25 +0.5 850,768 - CCNA_00787 0.25 +1.3 850,768 - CCNA_00787 0.25 +0.2 850,768 - CCNA_00787 0.25 +1.7 850,769 - CCNA_00787 0.25 +3.9 850,776 - CCNA_00787 0.26 +0.7 850,780 + CCNA_00787 0.26 +1.0 850,826 - CCNA_00787 0.31 +1.2 850,855 - CCNA_00787 0.35 +1.2 850,887 + CCNA_00787 0.38 +0.7 850,887 + CCNA_00787 0.38 +2.1 850,924 - CCNA_00787 0.43 +1.8 850,931 - CCNA_00787 0.43 +0.9 850,931 - CCNA_00787 0.43 +0.8 850,936 - CCNA_00787 0.44 +1.2 850,953 - CCNA_00787 0.46 +0.7 850,981 + CCNA_00787 0.49 +1.1 850,991 + CCNA_00787 0.50 -1.2 850,999 - CCNA_00787 0.51 +1.8 850,999 - CCNA_00787 0.51 +1.1 851,022 - CCNA_00787 0.54 +1.1 851,027 + CCNA_00787 0.55 -1.3 851,033 + CCNA_00787 0.55 +2.4 851,035 - CCNA_00787 0.55 +1.2 851,045 - CCNA_00787 0.57 +1.0 851,077 - CCNA_00787 0.60 +1.7 851,080 + CCNA_00787 0.61 -0.3 851,137 + CCNA_00787 0.67 +0.8 851,137 + CCNA_00787 0.67 +0.4 851,145 - CCNA_00787 0.68 -0.0 851,183 + CCNA_00787 0.73 +0.1 851,183 - CCNA_00787 0.73 -0.6 851,193 + CCNA_00787 0.74 +0.7 851,196 - CCNA_00787 0.74 +0.5 851,196 - CCNA_00787 0.74 +0.4 851,201 + CCNA_00787 0.75 +1.6 851,201 - CCNA_00787 0.75 +1.3 851,201 - CCNA_00787 0.75 +0.4 851,207 + CCNA_00787 0.75 +0.5 851,208 - CCNA_00787 0.75 +0.9 851,243 + CCNA_00787 0.79 +0.4 851,248 + CCNA_00787 0.80 -0.5 851,251 - CCNA_00787 0.80 +1.1 851,256 - CCNA_00787 0.81 +1.6 851,309 + CCNA_00787 0.87 -1.5 851,337 - +1.2 851,350 - +0.2 851,373 + -0.4 851,373 + +0.1 851,381 - -0.1 851,399 - +0.0 851,419 + +0.4
Or see this region's nucleotide sequence