Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03158

Experiment: PYE with copper (II) chloride 0.25 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with copper (II) chloride 0.25 mM
3,312,515	-				-0.4
3,312,542	+		CCNA_03157	0.10	-3.4
3,312,550	-		CCNA_03157	0.11	+2.4
3,312,560	-		CCNA_03157	0.12	+0.1
3,312,583	+		CCNA_03157	0.15	-2.0
3,312,623	+		CCNA_03157	0.20	-2.9
3,312,623	+		CCNA_03157	0.20	-2.7
3,312,623	+		CCNA_03157	0.20	-0.3
3,312,623	+		CCNA_03157	0.20	+0.2
3,312,623	+		CCNA_03157	0.20	-2.3
3,312,623	+		CCNA_03157	0.20	-3.0
3,312,623	+		CCNA_03157	0.20	-1.2
3,312,626	-		CCNA_03157	0.20	-0.1
3,312,631	-		CCNA_03157	0.20	-0.4
3,312,631	-		CCNA_03157	0.20	-1.1
3,312,631	-		CCNA_03157	0.20	-0.1
3,312,631	-		CCNA_03157	0.20	+0.1
3,312,631	-		CCNA_03157	0.20	-1.3
3,312,631	-		CCNA_03157	0.20	-1.7
3,312,631	-		CCNA_03157	0.20	-0.3
3,312,666	-		CCNA_03157	0.24	-0.5
3,312,668	-		CCNA_03157	0.25	-1.9
3,312,714	+		CCNA_03157	0.30	-2.6
3,312,714	+		CCNA_03157	0.30	-2.0
3,312,714	+		CCNA_03157	0.30	-0.9
3,312,714	+		CCNA_03157	0.30	-1.6
3,312,714	+		CCNA_03157	0.30	-1.2
3,312,722	-		CCNA_03157	0.31	+0.1
3,312,722	-		CCNA_03157	0.31	-1.3
3,312,722	-		CCNA_03157	0.31	-0.7
3,312,722	-		CCNA_03157	0.31	-1.7
3,312,722	-		CCNA_03157	0.31	-0.4
3,312,722	-		CCNA_03157	0.31	-1.9
3,312,722	-		CCNA_03157	0.31	-0.7
3,312,722	-		CCNA_03157	0.31	-1.7
3,312,722	-		CCNA_03157	0.31	-0.8
3,312,760	+		CCNA_03157	0.35	-0.4
3,312,777	+		CCNA_03157	0.37	-1.0
3,312,804	+		CCNA_03157	0.40	-2.1
3,312,818	+		CCNA_03157	0.42	-0.6
3,312,840	+		CCNA_03157	0.44	+0.8
3,312,840	+		CCNA_03157	0.44	-1.1
3,312,848	-		CCNA_03157	0.45	+0.6
3,312,881	+		CCNA_03157	0.49	-3.0
3,312,881	+		CCNA_03157	0.49	-2.0
3,312,948	-		CCNA_03157	0.56	+0.6
3,312,963	+		CCNA_03157	0.58	-2.7
3,312,970	+		CCNA_03157	0.59	-1.1
3,312,970	+		CCNA_03157	0.59	-3.4
3,312,970	+		CCNA_03157	0.59	-1.7
3,312,970	+		CCNA_03157	0.59	-2.1
3,312,978	-		CCNA_03157	0.60	-2.2
3,312,978	-		CCNA_03157	0.60	-0.9
3,312,978	-		CCNA_03157	0.60	-2.2
3,312,993	+		CCNA_03157	0.61	-3.2
3,313,090	+		CCNA_03157	0.72	-2.5
3,313,108	+		CCNA_03157	0.74	-1.7
3,313,111	-		CCNA_03157	0.75	-1.4
3,313,126	-		CCNA_03157	0.76	-0.8
3,313,153	+		CCNA_03157	0.79	-1.1
3,313,153	+		CCNA_03157	0.79	-1.5
3,313,153	+		CCNA_03157	0.79	-1.9
3,313,161	-		CCNA_03157	0.80	+0.6
3,313,171	-		CCNA_03157	0.81	+0.4
3,313,173	+		CCNA_03157	0.82	-3.0
3,313,173	+		CCNA_03157	0.82	-2.8
3,313,181	-		CCNA_03157	0.83	-1.7
3,313,184	+		CCNA_03157	0.83	-2.5
3,313,252	-				+0.7
3,313,293	+				-1.2
3,313,309	-				-1.3
3,313,344	+				+1.6
3,313,352	-				-1.5
3,313,363	+				-1.7
3,313,377	+				-1.1
3,313,411	-				-1.5
3,313,474	-				-2.8
3,313,486	-				-1.9
3,313,514	+				-0.8
3,313,546	+				-1.6
3,313,550	+				-2.3
3,313,550	+				-1.6
3,313,564	+				-2.2
3,313,577	-				-1.8
3,313,587	+				-4.1
3,313,602	+				-2.4
3,313,653	+		CCNA_03158	0.15	-2.1
3,313,656	-		CCNA_03158	0.15	-2.3
3,313,695	-		CCNA_03158	0.19	-2.4
3,313,705	+		CCNA_03158	0.20	-1.1
3,313,705	+		CCNA_03158	0.20	-2.2
3,313,705	+		CCNA_03158	0.20	-2.7
3,313,705	+		CCNA_03158	0.20	-1.9
3,313,713	-		CCNA_03158	0.21	+0.6
3,313,713	-		CCNA_03158	0.21	+0.4
3,313,713	-		CCNA_03158	0.21	+0.3
3,313,723	-		CCNA_03158	0.22	+0.1
3,313,738	-		CCNA_03158	0.24	-0.4
3,313,759	-		CCNA_03158	0.26	-1.6
3,313,796	-		CCNA_03158	0.30	-1.7
3,313,866	+		CCNA_03158	0.37	-0.8
3,313,947	+		CCNA_03158	0.46	-2.8
3,313,947	+		CCNA_03158	0.46	-2.6
3,314,000	+		CCNA_03158	0.51	-1.7
3,314,005	+		CCNA_03158	0.52	-3.1
3,314,017	+		CCNA_03158	0.53	-0.8
3,314,017	+		CCNA_03158	0.53	-0.4
3,314,028	+		CCNA_03158	0.54	-1.0
3,314,036	-		CCNA_03158	0.55	-2.1
3,314,078	+		CCNA_03158	0.59	+0.1
3,314,083	+		CCNA_03158	0.60	-2.9
3,314,083	+		CCNA_03158	0.60	-1.4
3,314,124	-		CCNA_03158	0.64	-0.1
3,314,210	-		CCNA_03158	0.73	-2.2
3,314,221	+		CCNA_03158	0.74	-0.6
3,314,235	+		CCNA_03158	0.76	-2.0
3,314,235	+		CCNA_03158	0.76	-3.0
3,314,239	+		CCNA_03158	0.76	-1.8
3,314,243	-		CCNA_03158	0.77	-0.4
3,314,272	-		CCNA_03158	0.80	+0.3
3,314,288	+		CCNA_03158	0.81	-2.3
3,314,288	+		CCNA_03158	0.81	-3.7
3,314,293	+		CCNA_03158	0.82	-1.8
3,314,294	+		CCNA_03158	0.82	-3.5
3,314,294	+		CCNA_03158	0.82	-2.5
3,314,323	+		CCNA_03158	0.85	+1.7
3,314,330	+		CCNA_03158	0.86	-0.4
3,314,330	+		CCNA_03158	0.86	-0.7
3,314,330	+		CCNA_03158	0.86	-2.1
3,314,403	+				-2.5
3,314,426	-				-0.6
3,314,442	+				-1.4
3,314,505	+				-0.0
3,314,513	-				-1.9
3,314,513	-				-0.9
3,314,522	+				+2.1
3,314,523	-				-0.2
3,314,530	-				-1.2
3,314,531	+				-1.7
3,314,536	+				-2.5
3,314,539	+				-1.7
3,314,549	-				+0.4
3,314,550	+				-1.9
3,314,560	-				-2.1
3,314,562	+				-1.9
3,314,569	+				-2.1
3,314,608	+				-1.1
3,314,659	-		CCNA_03159	0.13	-0.8
3,314,673	-		CCNA_03159	0.14	-0.9
3,314,681	-		CCNA_03159	0.14	-0.4
3,314,689	+		CCNA_03159	0.15	-2.6
3,314,696	-		CCNA_03159	0.15	-0.0
3,314,697	-		CCNA_03159	0.15	-1.3
3,314,723	+		CCNA_03159	0.17	-0.6
3,314,723	+		CCNA_03159	0.17	-2.5
3,314,731	-		CCNA_03159	0.18	-1.3
3,314,733	+		CCNA_03159	0.18	-1.6
3,314,741	-		CCNA_03159	0.18	+0.0
3,314,789	+		CCNA_03159	0.21	-2.2
3,314,789	+		CCNA_03159	0.21	-2.2
3,314,789	-		CCNA_03159	0.21	-1.3
3,314,852	+		CCNA_03159	0.26	-1.2
3,314,859	+		CCNA_03159	0.26	-0.7
3,314,859	+		CCNA_03159	0.26	-2.4
3,314,867	-		CCNA_03159	0.27	-1.2
3,314,867	-		CCNA_03159	0.27	-2.9
3,314,871	+		CCNA_03159	0.27	-3.2
3,314,871	+		CCNA_03159	0.27	-2.8
3,314,871	+		CCNA_03159	0.27	-3.1
3,314,874	-		CCNA_03159	0.27	-2.0
3,314,879	-		CCNA_03159	0.27	-0.9
3,314,879	-		CCNA_03159	0.27	-2.1
3,314,881	+		CCNA_03159	0.28	-1.3
3,314,906	+		CCNA_03159	0.29	-3.4
3,314,908	+		CCNA_03159	0.29	-1.9
3,314,908	+		CCNA_03159	0.29	-2.2
3,314,908	+		CCNA_03159	0.29	-2.1
3,314,921	+		CCNA_03159	0.30	-2.6
3,314,961	-		CCNA_03159	0.33	-1.4
3,314,973	+		CCNA_03159	0.34	-1.2
3,314,979	-		CCNA_03159	0.34	-0.4
3,314,981	-		CCNA_03159	0.34	-0.7
3,314,981	-		CCNA_03159	0.34	+0.4
3,315,023	+		CCNA_03159	0.37	-1.1
3,315,023	-		CCNA_03159	0.37	-3.2
3,315,031	-		CCNA_03159	0.37	-0.4
3,315,031	-		CCNA_03159	0.37	+0.1
3,315,031	-		CCNA_03159	0.37	-1.2
3,315,036	+		CCNA_03159	0.38	-0.2
3,315,041	-		CCNA_03159	0.38	-3.3
3,315,048	-		CCNA_03159	0.39	-0.2
3,315,048	-		CCNA_03159	0.39	-0.8
3,315,098	-		CCNA_03159	0.42	-2.4
3,315,144	+		CCNA_03159	0.45	+0.1
3,315,166	-		CCNA_03159	0.46	+0.4
3,315,176	-		CCNA_03159	0.47	-2.7
3,315,176	-		CCNA_03159	0.47	-2.4
3,315,205	-		CCNA_03159	0.49	-2.0
3,315,219	+		CCNA_03159	0.50	-0.4
3,315,253	+		CCNA_03159	0.52	+0.3
3,315,261	-		CCNA_03159	0.53	-2.4
3,315,301	-		CCNA_03159	0.55	-1.3
3,315,360	-		CCNA_03159	0.59	-1.4
3,315,381	-		CCNA_03159	0.61	-1.7
3,315,422	+		CCNA_03159	0.63	-3.6