Experiment: PYE with copper (II) chloride 0.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01961 and CCNA_01962 are separated by 99 nucleotides CCNA_01962 and CCNA_01963 overlap by 64 nucleotides CCNA_01963 and CCNA_01964 are separated by 4 nucleotides
CCNA_01961: CCNA_01961 - biotin carboxylase, at 2,104,868 to 2,106,214
_01961
CCNA_01962: CCNA_01962 - leucyl/phenylalanyl-tRNA--protein transferase, at 2,106,314 to 2,106,967
_01962
CCNA_01963: CCNA_01963 - hypothetical protein, at 2,106,904 to 2,107,542
_01963
CCNA_01964: CCNA_01964 - NADH dehydrogenase, at 2,107,547 to 2,107,942
_01964
Position (kb)
2106
2107 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2106.288 kb on + strand at 2106.288 kb on + strand at 2106.288 kb on + strand at 2106.288 kb on + strand at 2106.298 kb on + strand at 2106.332 kb on + strand at 2106.341 kb on - strand at 2106.363 kb on + strand at 2106.422 kb on - strand, within CCNA_01962 at 2106.466 kb on - strand, within CCNA_01962 at 2106.484 kb on + strand, within CCNA_01962 at 2106.515 kb on + strand, within CCNA_01962 at 2106.554 kb on - strand, within CCNA_01962 at 2106.603 kb on - strand at 2106.615 kb on - strand, within CCNA_01962 at 2106.703 kb on - strand, within CCNA_01962 at 2106.723 kb on - strand, within CCNA_01962 at 2106.723 kb on - strand, within CCNA_01962 at 2106.783 kb on + strand, within CCNA_01962 at 2106.783 kb on + strand, within CCNA_01962 at 2106.813 kb on - strand, within CCNA_01962 at 2106.874 kb on + strand, within CCNA_01962 at 2106.874 kb on + strand, within CCNA_01962 at 2106.882 kb on - strand, within CCNA_01962 at 2106.947 kb on - strand at 2106.970 kb on - strand, within CCNA_01963 at 2106.976 kb on + strand, within CCNA_01963 at 2107.009 kb on + strand, within CCNA_01963 at 2107.009 kb on + strand, within CCNA_01963 at 2107.009 kb on + strand, within CCNA_01963 at 2107.017 kb on - strand, within CCNA_01963 at 2107.027 kb on - strand, within CCNA_01963 at 2107.061 kb on + strand, within CCNA_01963 at 2107.061 kb on + strand, within CCNA_01963 at 2107.061 kb on + strand, within CCNA_01963 at 2107.069 kb on - strand, within CCNA_01963 at 2107.069 kb on - strand, within CCNA_01963 at 2107.165 kb on - strand, within CCNA_01963 at 2107.165 kb on - strand, within CCNA_01963 at 2107.214 kb on + strand, within CCNA_01963 at 2107.222 kb on - strand, within CCNA_01963 at 2107.354 kb on - strand, within CCNA_01963 at 2107.360 kb on + strand, within CCNA_01963 at 2107.506 kb on - strand at 2107.552 kb on - strand at 2107.612 kb on - strand, within CCNA_01964 at 2107.631 kb on - strand, within CCNA_01964
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with copper (II) chloride 0.25 mM remove 2,106,288 + +3.7 2,106,288 + +0.9 2,106,288 + +1.8 2,106,288 + +2.4 2,106,298 + +2.4 2,106,332 + +2.6 2,106,341 - +0.2 2,106,363 + +2.9 2,106,422 - CCNA_01962 0.17 +0.6 2,106,466 - CCNA_01962 0.23 -0.3 2,106,484 + CCNA_01962 0.26 +2.1 2,106,515 + CCNA_01962 0.31 +0.6 2,106,554 - CCNA_01962 0.37 +1.7 2,106,603 - +2.3 2,106,615 - CCNA_01962 0.46 +0.5 2,106,703 - CCNA_01962 0.59 -0.4 2,106,723 - CCNA_01962 0.63 -0.2 2,106,723 - CCNA_01962 0.63 -1.0 2,106,783 + CCNA_01962 0.72 +1.1 2,106,783 + CCNA_01962 0.72 +1.5 2,106,813 - CCNA_01962 0.76 +0.1 2,106,874 + CCNA_01962 0.86 +2.1 2,106,874 + CCNA_01962 0.86 +2.6 2,106,882 - CCNA_01962 0.87 +1.5 2,106,947 - +1.4 2,106,970 - CCNA_01963 0.10 +0.9 2,106,976 + CCNA_01963 0.11 -0.5 2,107,009 + CCNA_01963 0.16 -0.9 2,107,009 + CCNA_01963 0.16 +1.3 2,107,009 + CCNA_01963 0.16 +0.1 2,107,017 - CCNA_01963 0.18 +1.3 2,107,027 - CCNA_01963 0.19 +1.2 2,107,061 + CCNA_01963 0.25 +0.5 2,107,061 + CCNA_01963 0.25 +0.5 2,107,061 + CCNA_01963 0.25 -0.1 2,107,069 - CCNA_01963 0.26 +0.7 2,107,069 - CCNA_01963 0.26 +1.6 2,107,165 - CCNA_01963 0.41 +1.2 2,107,165 - CCNA_01963 0.41 +0.1 2,107,214 + CCNA_01963 0.49 -0.7 2,107,222 - CCNA_01963 0.50 +4.7 2,107,354 - CCNA_01963 0.70 +3.5 2,107,360 + CCNA_01963 0.71 -2.1 2,107,506 - +1.7 2,107,552 - +2.5 2,107,612 - CCNA_01964 0.16 +0.9 2,107,631 - CCNA_01964 0.21 -1.6
Or see this region's nucleotide sequence