Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01782

Experiment: PYE with copper (II) chloride 0.25 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with copper (II) chloride 0.25 mM
1,907,955	+		CCNA_01780	0.67	+2.2
1,907,957	-		CCNA_01780	0.67	+3.6
1,908,009	+		CCNA_01780	0.70	+7.0
1,908,018	+		CCNA_01780	0.71	+2.1
1,908,026	-		CCNA_01780	0.71	+3.1
1,908,031	-		CCNA_01780	0.72	+2.8
1,908,037	-		CCNA_01780	0.72	+4.1
1,908,042	-		CCNA_01780	0.73	+3.7
1,908,083	-		CCNA_01780	0.75	+3.4
1,908,100	+		CCNA_01780	0.76	+0.3
1,908,183	-		CCNA_01780	0.82	+4.5
1,908,215	+		CCNA_01780	0.84	+1.5
1,908,235	+		CCNA_01780	0.85	+3.5
1,908,235	+		CCNA_01780	0.85	+2.9
1,908,235	+		CCNA_01780	0.85	+1.9
1,908,235	+		CCNA_01780	0.85	+2.1
1,908,235	+		CCNA_01780	0.85	+2.0
1,908,243	-		CCNA_01780	0.86	+3.2
1,908,243	-		CCNA_01780	0.86	+3.6
1,908,243	-		CCNA_01780	0.86	+5.7
1,908,243	-		CCNA_01780	0.86	+3.4
1,908,253	-		CCNA_01780	0.87	+3.9
1,908,253	-		CCNA_01780	0.87	+4.3
1,908,305	+				+2.1
1,908,313	-				+3.2
1,908,364	-				+3.3
1,908,364	-				+3.0
1,908,372	+				+1.3
1,908,390	-				+2.7
1,908,390	-				+3.9
1,908,402	+				+3.2
1,908,457	-				+0.6
1,908,468	-				+1.5
1,908,521	+				+1.5
1,908,562	+				-1.1
1,908,575	-				+1.8
1,908,649	+		CCNA_01781	0.27	-1.2
1,908,649	+		CCNA_01781	0.27	+0.8
1,908,652	-		CCNA_01781	0.27	+1.8
1,908,654	+		CCNA_01781	0.28	+1.2
1,908,656	+		CCNA_01781	0.28	+0.2
1,908,671	-		CCNA_01781	0.32	-0.6
1,908,671	-		CCNA_01781	0.32	+1.3
1,908,737	-		CCNA_01781	0.49	+0.3
1,908,762	-		CCNA_01781	0.55	-0.9
1,908,767	+		CCNA_01781	0.56	+0.2
1,908,767	+		CCNA_01781	0.56	-1.2
1,908,767	+		CCNA_01781	0.56	-0.2
1,908,768	-		CCNA_01781	0.57	-0.4
1,908,825	-		CCNA_01781	0.71	+0.9
1,908,841	+		CCNA_01781	0.75	+0.4
1,908,841	+		CCNA_01781	0.75	-0.0
1,908,849	-		CCNA_01781	0.77	+0.4
1,908,849	-		CCNA_01781	0.77	+2.7
1,908,849	-		CCNA_01781	0.77	-0.8
1,908,939	-				-1.3
1,908,997	-				-2.2
1,908,997	-				+0.3
1,909,078	-				+0.5
1,909,115	-				+0.3
1,909,120	+				-0.6
1,909,128	-				-1.6
1,909,146	+				-0.1
1,909,245	-		CCNA_01782	0.14	+0.7
1,909,258	+		CCNA_01782	0.15	-0.9
1,909,263	+		CCNA_01782	0.15	-0.1
1,909,271	-		CCNA_01782	0.15	+0.8
1,909,271	-		CCNA_01782	0.15	-2.6
1,909,271	-		CCNA_01782	0.15	-0.4
1,909,335	-		CCNA_01782	0.18	+0.5
1,909,341	-		CCNA_01782	0.18	+1.5
1,909,350	-		CCNA_01782	0.19	-0.7
1,909,423	+		CCNA_01782	0.22	-0.4
1,909,423	+		CCNA_01782	0.22	-0.2
1,909,423	+		CCNA_01782	0.22	+0.5
1,909,423	+		CCNA_01782	0.22	-1.5
1,909,423	+		CCNA_01782	0.22	+1.3
1,909,423	+		CCNA_01782	0.22	+0.2
1,909,423	+		CCNA_01782	0.22	-0.6
1,909,431	-		CCNA_01782	0.22	+0.6
1,909,431	-		CCNA_01782	0.22	+2.5
1,909,431	-		CCNA_01782	0.22	-0.2
1,909,431	-		CCNA_01782	0.22	-0.9
1,909,431	-		CCNA_01782	0.22	-0.1
1,909,431	-		CCNA_01782	0.22	-1.0
1,909,431	-		CCNA_01782	0.22	+2.1
1,909,431	-		CCNA_01782	0.22	-0.8
1,909,431	-		CCNA_01782	0.22	+0.4
1,909,431	-		CCNA_01782	0.22	+0.4
1,909,431	-		CCNA_01782	0.22	-0.1
1,909,431	-		CCNA_01782	0.22	-0.4
1,909,431	-		CCNA_01782	0.22	-1.2
1,909,431	-		CCNA_01782	0.22	+0.5
1,909,431	-		CCNA_01782	0.22	-0.2
1,909,438	+		CCNA_01782	0.23	-0.9
1,909,438	+		CCNA_01782	0.23	+0.1
1,909,444	-		CCNA_01782	0.23	-0.5
1,909,446	-		CCNA_01782	0.23	-1.5
1,909,546	-		CCNA_01782	0.28	-0.4
1,909,546	-		CCNA_01782	0.28	-0.5
1,909,643	-		CCNA_01782	0.32	-0.0
1,909,659	-		CCNA_01782	0.33	+0.6
1,909,661	+		CCNA_01782	0.33	-1.9
1,909,661	+		CCNA_01782	0.33	+1.3
1,909,661	-		CCNA_01782	0.33	-1.9
1,909,669	-		CCNA_01782	0.33	-2.7
1,909,669	-		CCNA_01782	0.33	-0.7
1,909,669	-		CCNA_01782	0.33	+1.6
1,909,669	-		CCNA_01782	0.33	-1.5
1,909,672	+				+2.1
1,909,680	-		CCNA_01782	0.34	-0.4
1,909,680	-		CCNA_01782	0.34	-1.4
1,909,681	-		CCNA_01782	0.34	+0.5
1,909,726	-		CCNA_01782	0.36	+0.8
1,909,733	+		CCNA_01782	0.36	-0.2
1,909,749	-		CCNA_01782	0.37	-1.2
1,909,756	+		CCNA_01782	0.37	+1.5
1,909,756	+		CCNA_01782	0.37	-0.8
1,909,764	-		CCNA_01782	0.37	-2.6
1,909,778	-		CCNA_01782	0.38	-1.3
1,909,814	-		CCNA_01782	0.40	-0.7
1,909,820	+		CCNA_01782	0.40	+0.4
1,909,893	-		CCNA_01782	0.43	+0.8
1,909,925	-		CCNA_01782	0.45	-0.8
1,909,943	+		CCNA_01782	0.45	+1.5
1,909,943	+		CCNA_01782	0.45	-0.7
1,909,949	-		CCNA_01782	0.46	-1.3
1,909,949	-		CCNA_01782	0.46	+0.6
1,909,959	-		CCNA_01782	0.46	-0.2
1,909,965	-		CCNA_01782	0.46	+0.9
1,910,007	-		CCNA_01782	0.48	+1.1
1,910,007	-		CCNA_01782	0.48	+1.8
1,910,021	-		CCNA_01782	0.49	-0.2
1,910,139	+		CCNA_01782	0.54	+0.6
1,910,166	-		CCNA_01782	0.55	+1.3
1,910,168	+		CCNA_01782	0.56	+0.3
1,910,237	-		CCNA_01782	0.59	+0.5
1,910,281	+		CCNA_01782	0.61	+0.2
1,910,289	-		CCNA_01782	0.61	+0.2
1,910,289	-		CCNA_01782	0.61	-0.6
1,910,346	+		CCNA_01782	0.64	-0.1
1,910,348	-		CCNA_01782	0.64	-0.1
1,910,389	+		CCNA_01782	0.66	-1.2
1,910,402	-		CCNA_01782	0.66	+0.6
1,910,414	-		CCNA_01782	0.67	-0.9
1,910,422	-		CCNA_01782	0.67	-0.5
1,910,460	+		CCNA_01782	0.69	+0.2
1,910,468	-		CCNA_01782	0.69	+1.5
1,910,481	-		CCNA_01782	0.70	+1.3
1,910,512	-		CCNA_01782	0.71	-0.5
1,910,512	-		CCNA_01782	0.71	-0.4
1,910,514	-		CCNA_01782	0.71	-0.8
1,910,514	-		CCNA_01782	0.71	+0.4
1,910,524	-		CCNA_01782	0.72	-0.8
1,910,557	+		CCNA_01782	0.73	-1.4
1,910,557	+		CCNA_01782	0.73	+0.3
1,910,563	-		CCNA_01782	0.73	-0.5
1,910,565	-		CCNA_01782	0.73	-1.5
1,910,565	-		CCNA_01782	0.73	-0.9
1,910,565	-		CCNA_01782	0.73	+0.9
1,910,640	+		CCNA_01782	0.77	+0.4
1,910,701	+		CCNA_01782	0.80	+1.1
1,910,734	+		CCNA_01782	0.81	+0.5
1,910,753	-		CCNA_01782	0.82	-1.5
1,910,766	-		CCNA_01782	0.83	+1.5
1,910,770	-		CCNA_01782	0.83	-0.9
1,910,843	+		CCNA_01782	0.86	+0.1
1,910,852	+		CCNA_01782	0.86	-0.4
1,910,952	+				+0.3
1,910,993	+				-0.4
1,911,001	-				+1.8
1,911,001	-				-1.1
1,911,001	-				-1.0
1,911,005	+				+1.7
1,911,020	+				+0.3
1,911,039	-				+1.3
1,911,067	-				-1.9
1,911,148	+				+0.4
1,911,148	+				-0.9
1,911,156	+				-0.2
1,911,156	-				-0.5
1,911,156	-				+0.5
1,911,206	+				-0.7
1,911,214	-				-0.3
1,911,239	-				+0.1
1,911,298	+				+0.9
1,911,364	-				+1.7
1,911,379	-				+2.4
1,911,380	-				+1.8
1,912,084	+				-0.2
1,912,094	-				+1.0
1,912,152	-				+1.1
1,912,152	-				+1.8