Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01751

Experiment: PYE with copper (II) chloride 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01750 and CCNA_01751 overlap by 4 nucleotidesCCNA_01751 and CCNA_01752 are separated by 3 nucleotidesCCNA_01752 and CCNA_01753 overlap by 8 nucleotides CCNA_01750: CCNA_01750 - 3-oxoacyl-(acyl-carrier-protein) synthase II, at 1,877,432 to 1,878,712 _01750 CCNA_01751: CCNA_01751 - aminodeoxychorismate lyase, at 1,878,709 to 1,879,809 _01751 CCNA_01752: CCNA_01752 - YicC-family protein, at 1,879,813 to 1,880,694 _01752 CCNA_01753: CCNA_01753 - guanylate kinase, at 1,880,687 to 1,881,328 _01753 Position (kb) 1878 1879 1880Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1878.849 kb on + strand, within CCNA_01751at 1878.921 kb on + strand, within CCNA_01751at 1878.956 kb on + strand, within CCNA_01751at 1879.209 kb on + strand, within CCNA_01751at 1879.235 kb on + strand, within CCNA_01751at 1879.243 kb on + strand, within CCNA_01751at 1879.243 kb on + strand, within CCNA_01751at 1879.557 kb on + strand, within CCNA_01751at 1879.565 kb on - strand, within CCNA_01751at 1879.565 kb on - strand, within CCNA_01751at 1879.649 kb on + strand, within CCNA_01751at 1879.713 kb on - strandat 1879.824 kb on + strandat 1879.853 kb on - strandat 1879.983 kb on + strand, within CCNA_01752at 1879.991 kb on - strand, within CCNA_01752at 1879.991 kb on - strand, within CCNA_01752at 1879.991 kb on - strand, within CCNA_01752at 1880.062 kb on + strand, within CCNA_01752at 1880.121 kb on + strand, within CCNA_01752at 1880.153 kb on - strand, within CCNA_01752at 1880.153 kb on - strand, within CCNA_01752at 1880.202 kb on + strand, within CCNA_01752at 1880.334 kb on + strand, within CCNA_01752at 1880.340 kb on + strand, within CCNA_01752at 1880.342 kb on - strand, within CCNA_01752at 1880.342 kb on - strand, within CCNA_01752at 1880.376 kb on + strand, within CCNA_01752at 1880.393 kb on + strand, within CCNA_01752at 1880.393 kb on + strand, within CCNA_01752at 1880.403 kb on + strand, within CCNA_01752at 1880.479 kb on + strand, within CCNA_01752at 1880.479 kb on + strand, within CCNA_01752at 1880.487 kb on - strand, within CCNA_01752at 1880.523 kb on + strand, within CCNA_01752at 1880.523 kb on + strand, within CCNA_01752at 1880.567 kb on + strand, within CCNA_01752at 1880.586 kb on + strand, within CCNA_01752at 1880.623 kb on - strandat 1880.623 kb on - strandat 1880.636 kb on + strandat 1880.644 kb on - strandat 1880.651 kb on - strandat 1880.659 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with copper (II) chloride 0.25 mM
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1,878,849 + CCNA_01751 0.13 +1.6
1,878,921 + CCNA_01751 0.19 +2.1
1,878,956 + CCNA_01751 0.22 +2.7
1,879,209 + CCNA_01751 0.45 +2.6
1,879,235 + CCNA_01751 0.48 +3.7
1,879,243 + CCNA_01751 0.49 +4.5
1,879,243 + CCNA_01751 0.49 +3.1
1,879,557 + CCNA_01751 0.77 +3.3
1,879,565 - CCNA_01751 0.78 -1.3
1,879,565 - CCNA_01751 0.78 +1.1
1,879,649 + CCNA_01751 0.85 +3.0
1,879,713 - +1.8
1,879,824 + +1.8
1,879,853 - +0.2
1,879,983 + CCNA_01752 0.19 +1.3
1,879,991 - CCNA_01752 0.20 -0.8
1,879,991 - CCNA_01752 0.20 -1.8
1,879,991 - CCNA_01752 0.20 +0.4
1,880,062 + CCNA_01752 0.28 +2.3
1,880,121 + CCNA_01752 0.35 +0.5
1,880,153 - CCNA_01752 0.39 +1.4
1,880,153 - CCNA_01752 0.39 +0.8
1,880,202 + CCNA_01752 0.44 +1.2
1,880,334 + CCNA_01752 0.59 +0.3
1,880,340 + CCNA_01752 0.60 +1.5
1,880,342 - CCNA_01752 0.60 +0.0
1,880,342 - CCNA_01752 0.60 -0.3
1,880,376 + CCNA_01752 0.64 +1.5
1,880,393 + CCNA_01752 0.66 +1.8
1,880,393 + CCNA_01752 0.66 +1.7
1,880,403 + CCNA_01752 0.67 +1.7
1,880,479 + CCNA_01752 0.76 +0.7
1,880,479 + CCNA_01752 0.76 +1.4
1,880,487 - CCNA_01752 0.76 +1.6
1,880,523 + CCNA_01752 0.80 +1.2
1,880,523 + CCNA_01752 0.80 +1.1
1,880,567 + CCNA_01752 0.85 +1.6
1,880,586 + CCNA_01752 0.88 +0.4
1,880,623 - -0.5
1,880,623 - +3.4
1,880,636 + +1.0
1,880,644 - -1.4
1,880,651 - -1.7
1,880,659 - +0.0

Or see this region's nucleotide sequence