Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01195

Experiment: PYE with copper (II) chloride 0.25 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with copper (II) chloride 0.25 mM
1,317,183	-		CCNA_01194	0.69	+0.5
1,317,218	+		CCNA_01194	0.70	-0.4
1,317,219	+		CCNA_01194	0.70	+1.3
1,317,227	-		CCNA_01194	0.70	+0.4
1,317,253	+		CCNA_01194	0.71	-0.0
1,317,253	+		CCNA_01194	0.71	-1.2
1,317,256	-		CCNA_01194	0.72	+0.3
1,317,279	+		CCNA_01194	0.72	-0.2
1,317,280	+		CCNA_01194	0.73	-0.7
1,317,349	-		CCNA_01194	0.75	+1.2
1,317,356	-		CCNA_01194	0.76	-0.2
1,317,372	+		CCNA_01194	0.76	-0.1
1,317,380	-		CCNA_01194	0.77	+0.7
1,317,400	+		CCNA_01194	0.77	+0.6
1,317,400	+		CCNA_01194	0.77	+1.0
1,317,401	-		CCNA_01194	0.77	-0.2
1,317,408	-		CCNA_01194	0.78	-0.5
1,317,408	-		CCNA_01194	0.78	+0.3
1,317,408	-		CCNA_01194	0.78	+0.7
1,317,423	+		CCNA_01194	0.78	+2.7
1,317,424	+		CCNA_01194	0.78	-0.4
1,317,486	+		CCNA_01194	0.81	-0.6
1,317,494	-		CCNA_01194	0.81	-0.5
1,317,536	-		CCNA_01194	0.83	+0.6
1,317,553	-		CCNA_01194	0.84	+0.4
1,317,582	+		CCNA_01194	0.85	-0.6
1,317,644	-		CCNA_01194	0.87	+0.6
1,317,694	-		CCNA_01194	0.89	+0.3
1,317,756	-				+1.8
1,317,771	-				-0.2
1,317,791	+				-0.5
1,317,833	-				+2.1
1,317,906	+				-1.2
1,317,914	-				+2.6
1,318,001	-				-0.5
1,318,055	-				-0.4
1,318,096	+				+1.9
1,318,100	+				-1.1
1,318,100	+				-1.4
1,318,121	-				+0.8
1,318,126	-				+0.3
1,318,153	-				-0.8
1,318,228	-		CCNA_01195	0.12	-0.2
1,318,233	-		CCNA_01195	0.13	-1.2
1,318,233	-		CCNA_01195	0.13	+1.6
1,318,233	-		CCNA_01195	0.13	-1.0
1,318,233	-		CCNA_01195	0.13	-0.7
1,318,233	-		CCNA_01195	0.13	-0.3
1,318,248	-		CCNA_01195	0.14	-0.3
1,318,248	-		CCNA_01195	0.14	-1.0
1,318,346	+		CCNA_01195	0.24	+0.3
1,318,346	+		CCNA_01195	0.24	-1.6
1,318,346	+		CCNA_01195	0.24	-1.1
1,318,346	+		CCNA_01195	0.24	-0.5
1,318,346	+		CCNA_01195	0.24	-2.0
1,318,346	+		CCNA_01195	0.24	-1.4
1,318,346	+		CCNA_01195	0.24	+0.5
1,318,346	+		CCNA_01195	0.24	-0.4
1,318,346	+		CCNA_01195	0.24	-0.4
1,318,346	+		CCNA_01195	0.24	-0.0
1,318,347	-		CCNA_01195	0.24	+0.6
1,318,349	-		CCNA_01195	0.24	+2.0
1,318,354	-		CCNA_01195	0.24	-0.9
1,318,354	-		CCNA_01195	0.24	-0.6
1,318,354	-		CCNA_01195	0.24	+0.4
1,318,354	-		CCNA_01195	0.24	-2.1
1,318,354	-		CCNA_01195	0.24	+0.8
1,318,354	-		CCNA_01195	0.24	-2.0
1,318,376	-		CCNA_01195	0.27	-1.2
1,318,423	+		CCNA_01195	0.31	+2.0
1,318,431	-		CCNA_01195	0.32	+0.3
1,318,431	-		CCNA_01195	0.32	-0.9
1,318,441	+		CCNA_01195	0.33	-0.4
1,318,446	+		CCNA_01195	0.33	+2.3
1,318,448	+		CCNA_01195	0.34	-1.2
1,318,449	-		CCNA_01195	0.34	-0.7
1,318,456	-		CCNA_01195	0.34	+0.8
1,318,456	-		CCNA_01195	0.34	-1.6
1,318,469	-		CCNA_01195	0.36	+0.0
1,318,479	-		CCNA_01195	0.37	-1.1
1,318,495	-		CCNA_01195	0.38	+0.1
1,318,496	-		CCNA_01195	0.38	-0.2
1,318,496	-		CCNA_01195	0.38	-0.4
1,318,508	+		CCNA_01195	0.39	-1.4
1,318,516	-		CCNA_01195	0.40	+2.3
1,318,533	+		CCNA_01195	0.42	+0.8
1,318,694	-		CCNA_01195	0.58	+0.5
1,318,719	+		CCNA_01195	0.60	-0.4
1,318,722	+		CCNA_01195	0.60	+0.3
1,318,788	-		CCNA_01195	0.67	+1.0
1,318,794	-		CCNA_01195	0.67	+0.8
1,318,802	+		CCNA_01195	0.68	-0.5
1,318,802	+		CCNA_01195	0.68	+0.6
1,318,802	+		CCNA_01195	0.68	-1.4
1,318,810	-		CCNA_01195	0.69	-0.6
1,318,875	-				+3.0
1,318,875	-		CCNA_01195	0.75	-0.5
1,318,877	+		CCNA_01195	0.75	-0.9
1,318,946	-		CCNA_01195	0.82	+0.5
1,318,965	+		CCNA_01195	0.84	-2.2
1,318,972	+		CCNA_01195	0.85	+1.1
1,318,973	-		CCNA_01195	0.85	-0.7
1,318,973	-		CCNA_01195	0.85	-2.0
1,319,035	+				+0.8
1,319,037	+				+0.6
1,319,086	+				-0.5
1,319,094	-				+0.4
1,319,095	-				-1.5
1,319,109	-				+1.5
1,319,110	+				+1.6
1,319,151	-				-0.0
1,319,167	-				+0.3
1,319,180	+				-0.7
1,319,191	+				-0.8
1,319,204	-				+1.3
1,319,205	-				-1.1
1,319,212	-				-2.3
1,319,243	-				+2.3
1,319,243	-				+1.6
1,319,243	-				+2.1
1,319,248	-				+0.4
1,319,252	+				+1.4
1,319,260	+				+1.1
1,319,260	-				-1.3
1,319,268	-				+0.3
1,319,268	-				-1.0
1,319,292	-				+0.6
1,319,292	-				-1.7
1,319,308	-				-0.7
1,319,350	-				+0.6
1,319,375	-				-1.6
1,319,407	-				-2.0
1,319,408	-				+0.2
1,319,420	-				+2.0
1,319,431	-				+1.0
1,319,433	-				+0.1
1,319,435	+				+0.3
1,319,476	+		CCNA_01196	0.10	+0.3
1,319,476	+		CCNA_01196	0.10	+0.0
1,319,476	+		CCNA_01196	0.10	+0.9
1,319,482	+		CCNA_01196	0.11	+0.6
1,319,537	-		CCNA_01196	0.14	-1.0
1,319,541	-		CCNA_01196	0.14	-0.6
1,319,556	-		CCNA_01196	0.14	+0.2
1,319,578	-		CCNA_01196	0.16	+1.0
1,319,585	-		CCNA_01196	0.16	-0.2
1,319,587	+		CCNA_01196	0.16	+1.4
1,319,597	+		CCNA_01196	0.17	+1.7
1,319,630	+		CCNA_01196	0.18	+0.8
1,319,649	-		CCNA_01196	0.19	-1.0
1,319,707	-		CCNA_01196	0.22	+2.4
1,319,707	-		CCNA_01196	0.22	+1.9
1,319,707	-		CCNA_01196	0.22	+2.1
1,319,707	-		CCNA_01196	0.22	+2.2
1,319,722	+		CCNA_01196	0.23	+1.6
1,319,763	-		CCNA_01196	0.25	-0.2
1,319,864	+		CCNA_01196	0.30	-0.1
1,319,889	-		CCNA_01196	0.31	-1.3
1,319,921	+		CCNA_01196	0.33	-0.6
1,319,962	+		CCNA_01196	0.35	-0.2
1,320,004	+		CCNA_01196	0.37	-1.5
1,320,004	+		CCNA_01196	0.37	-1.1
1,320,012	-		CCNA_01196	0.38	-1.4
1,320,012	-		CCNA_01196	0.38	+1.2
1,320,013	-		CCNA_01196	0.38	-1.4
1,320,039	+		CCNA_01196	0.39	-2.1
1,320,039	+		CCNA_01196	0.39	-0.2
1,320,061	+		CCNA_01196	0.40	-0.7
1,320,061	+		CCNA_01196	0.40	+0.8
1,320,061	+		CCNA_01196	0.40	+0.1
1,320,061	+		CCNA_01196	0.40	+1.4
1,320,069	-		CCNA_01196	0.40	-1.0
1,320,071	+		CCNA_01196	0.41	+1.3
1,320,077	-		CCNA_01196	0.41	-0.3
1,320,096	+		CCNA_01196	0.42	+0.7
1,320,123	+		CCNA_01196	0.43	+0.7
1,320,123	+		CCNA_01196	0.43	-1.4
1,320,123	+		CCNA_01196	0.43	-2.3