Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01147

Experiment: PYE with copper (II) chloride 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01145 and CCNA_01147 are separated by 265 nucleotidesCCNA_01147 and CCNA_01148 are separated by 89 nucleotidesCCNA_01148 and CCNA_01149 are separated by 2 nucleotides CCNA_01145: CCNA_01145 - monoamine oxidase, at 1,248,684 to 1,250,288 _01145 CCNA_01147: CCNA_01147 - acetyltransferase, at 1,250,554 to 1,251,102 _01147 CCNA_01148: CCNA_01148 - hypothetical protein, at 1,251,192 to 1,251,368 _01148 CCNA_01149: CCNA_01149 - TonB-dependent outer membrane receptor, at 1,251,371 to 1,254,007 _01149 Position (kb) 1250 1251 1252Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1249.596 kb on - strand, within CCNA_01145at 1249.612 kb on + strand, within CCNA_01145at 1249.612 kb on + strand, within CCNA_01145at 1249.612 kb on + strand, within CCNA_01145at 1249.620 kb on - strand, within CCNA_01145at 1249.620 kb on - strand, within CCNA_01145at 1249.653 kb on - strand, within CCNA_01145at 1249.663 kb on - strand, within CCNA_01145at 1249.671 kb on + strand, within CCNA_01145at 1249.671 kb on + strand, within CCNA_01145at 1249.671 kb on + strand, within CCNA_01145at 1249.671 kb on + strand, within CCNA_01145at 1249.679 kb on - strand, within CCNA_01145at 1249.679 kb on - strand, within CCNA_01145at 1249.679 kb on - strand, within CCNA_01145at 1249.679 kb on - strand, within CCNA_01145at 1249.726 kb on + strand, within CCNA_01145at 1249.726 kb on + strand, within CCNA_01145at 1249.726 kb on - strand, within CCNA_01145at 1249.757 kb on - strand, within CCNA_01145at 1249.768 kb on + strand, within CCNA_01145at 1249.768 kb on + strand, within CCNA_01145at 1249.768 kb on + strand, within CCNA_01145at 1249.769 kb on - strand, within CCNA_01145at 1249.786 kb on + strand, within CCNA_01145at 1249.786 kb on + strand, within CCNA_01145at 1249.786 kb on + strand, within CCNA_01145at 1249.794 kb on - strand, within CCNA_01145at 1249.794 kb on - strand, within CCNA_01145at 1249.794 kb on - strand, within CCNA_01145at 1249.819 kb on + strand, within CCNA_01145at 1249.847 kb on - strand, within CCNA_01145at 1249.864 kb on + strand, within CCNA_01145at 1249.864 kb on + strand, within CCNA_01145at 1249.869 kb on + strand, within CCNA_01145at 1249.869 kb on + strand, within CCNA_01145at 1249.869 kb on + strand, within CCNA_01145at 1249.869 kb on + strand, within CCNA_01145at 1249.869 kb on + strand, within CCNA_01145at 1249.869 kb on + strand, within CCNA_01145at 1249.869 kb on + strand, within CCNA_01145at 1249.872 kb on - strand, within CCNA_01145at 1249.872 kb on - strand, within CCNA_01145at 1249.874 kb on + strand, within CCNA_01145at 1249.877 kb on - strand, within CCNA_01145at 1249.877 kb on - strand, within CCNA_01145at 1249.877 kb on - strand, within CCNA_01145at 1249.877 kb on - strand, within CCNA_01145at 1249.884 kb on - strand, within CCNA_01145at 1249.913 kb on + strand, within CCNA_01145at 1249.921 kb on - strand, within CCNA_01145at 1249.945 kb on + strand, within CCNA_01145at 1249.954 kb on - strand, within CCNA_01145at 1249.954 kb on - strand, within CCNA_01145at 1249.959 kb on - strand, within CCNA_01145at 1249.973 kb on + strand, within CCNA_01145at 1249.974 kb on + strand, within CCNA_01145at 1249.993 kb on + strand, within CCNA_01145at 1249.997 kb on + strand, within CCNA_01145at 1250.001 kb on - strand, within CCNA_01145at 1250.001 kb on - strand, within CCNA_01145at 1250.024 kb on + strand, within CCNA_01145at 1250.026 kb on + strand, within CCNA_01145at 1250.026 kb on + strand, within CCNA_01145at 1250.050 kb on + strand, within CCNA_01145at 1250.050 kb on + strand, within CCNA_01145at 1250.082 kb on + strand, within CCNA_01145at 1250.082 kb on + strand, within CCNA_01145at 1250.082 kb on + strand, within CCNA_01145at 1250.090 kb on - strand, within CCNA_01145at 1250.093 kb on + strand, within CCNA_01145at 1250.125 kb on + strand, within CCNA_01145at 1250.138 kb on - strandat 1250.155 kb on + strandat 1250.168 kb on - strandat 1250.205 kb on - strandat 1250.227 kb on - strandat 1250.273 kb on + strandat 1250.273 kb on + strandat 1250.273 kb on + strandat 1250.281 kb on - strandat 1250.282 kb on + strandat 1250.339 kb on + strandat 1250.339 kb on + strandat 1250.347 kb on - strandat 1250.347 kb on - strandat 1250.371 kb on - strandat 1250.374 kb on + strandat 1250.471 kb on - strandat 1250.539 kb on - strandat 1250.546 kb on + strandat 1250.553 kb on + strandat 1250.554 kb on + strandat 1250.578 kb on - strandat 1250.584 kb on - strandat 1250.599 kb on + strandat 1250.609 kb on + strand, within CCNA_01147at 1250.679 kb on + strand, within CCNA_01147at 1250.704 kb on + strand, within CCNA_01147at 1250.754 kb on - strand, within CCNA_01147at 1250.756 kb on + strand, within CCNA_01147at 1250.792 kb on + strand, within CCNA_01147at 1250.792 kb on + strand, within CCNA_01147at 1250.802 kb on + strand, within CCNA_01147at 1250.847 kb on + strand, within CCNA_01147at 1250.847 kb on - strand, within CCNA_01147at 1250.853 kb on + strand, within CCNA_01147at 1250.855 kb on - strand, within CCNA_01147at 1250.878 kb on + strand, within CCNA_01147at 1250.896 kb on - strand, within CCNA_01147at 1250.908 kb on + strand, within CCNA_01147at 1250.916 kb on - strand, within CCNA_01147at 1250.916 kb on - strand, within CCNA_01147at 1250.918 kb on + strand, within CCNA_01147at 1250.969 kb on - strand, within CCNA_01147at 1251.033 kb on - strand, within CCNA_01147at 1251.039 kb on + strand, within CCNA_01147at 1251.039 kb on + strand, within CCNA_01147at 1251.039 kb on + strand, within CCNA_01147at 1251.045 kb on - strand, within CCNA_01147at 1251.047 kb on - strand, within CCNA_01147at 1251.060 kb on + strandat 1251.128 kb on - strandat 1251.204 kb on + strandat 1251.204 kb on + strandat 1251.204 kb on + strandat 1251.209 kb on - strandat 1251.211 kb on + strand, within CCNA_01148at 1251.212 kb on - strand, within CCNA_01148at 1251.212 kb on - strand, within CCNA_01148at 1251.220 kb on + strand, within CCNA_01148at 1251.221 kb on + strand, within CCNA_01148at 1251.221 kb on + strand, within CCNA_01148at 1251.221 kb on + strand, within CCNA_01148at 1251.221 kb on + strand, within CCNA_01148at 1251.228 kb on - strand, within CCNA_01148at 1251.228 kb on - strand, within CCNA_01148at 1251.228 kb on - strand, within CCNA_01148at 1251.229 kb on - strand, within CCNA_01148at 1251.229 kb on - strand, within CCNA_01148at 1251.231 kb on + strand, within CCNA_01148at 1251.231 kb on + strand, within CCNA_01148at 1251.231 kb on + strand, within CCNA_01148at 1251.238 kb on + strand, within CCNA_01148at 1251.239 kb on - strand, within CCNA_01148at 1251.269 kb on - strand, within CCNA_01148at 1251.269 kb on - strand, within CCNA_01148at 1251.269 kb on - strand, within CCNA_01148at 1251.281 kb on - strand, within CCNA_01148at 1251.331 kb on - strand, within CCNA_01148at 1251.348 kb on + strand, within CCNA_01148at 1251.365 kb on - strandat 1251.369 kb on + strandat 1251.377 kb on - strandat 1251.377 kb on - strandat 1251.485 kb on - strandat 1251.486 kb on - strandat 1251.581 kb on + strandat 1251.589 kb on - strandat 1251.627 kb on + strandat 1251.651 kb on + strand, within CCNA_01149at 1251.651 kb on + strand, within CCNA_01149at 1251.651 kb on + strand, within CCNA_01149at 1251.651 kb on + strand, within CCNA_01149at 1251.651 kb on + strand, within CCNA_01149at 1251.659 kb on - strand, within CCNA_01149at 1251.659 kb on - strand, within CCNA_01149at 1251.659 kb on - strand, within CCNA_01149at 1251.659 kb on - strand, within CCNA_01149at 1251.725 kb on - strand, within CCNA_01149at 1251.728 kb on + strand, within CCNA_01149at 1251.796 kb on + strand, within CCNA_01149at 1251.802 kb on + strand, within CCNA_01149at 1251.816 kb on + strand, within CCNA_01149at 1251.850 kb on + strand, within CCNA_01149at 1251.899 kb on - strand, within CCNA_01149at 1251.899 kb on - strand, within CCNA_01149at 1251.933 kb on - strand, within CCNA_01149at 1251.935 kb on + strand, within CCNA_01149at 1251.935 kb on + strand, within CCNA_01149at 1251.940 kb on + strand, within CCNA_01149at 1251.943 kb on - strand, within CCNA_01149at 1251.943 kb on - strand, within CCNA_01149at 1251.943 kb on - strand, within CCNA_01149at 1251.945 kb on + strand, within CCNA_01149at 1251.945 kb on + strand, within CCNA_01149at 1251.968 kb on + strand, within CCNA_01149at 1251.973 kb on + strand, within CCNA_01149at 1251.981 kb on + strand, within CCNA_01149at 1251.981 kb on + strand, within CCNA_01149at 1251.981 kb on + strand, within CCNA_01149at 1251.986 kb on + strand, within CCNA_01149at 1251.989 kb on - strand, within CCNA_01149at 1251.989 kb on - strand, within CCNA_01149at 1252.069 kb on + strand, within CCNA_01149

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with copper (II) chloride 0.25 mM
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1,249,596 - CCNA_01145 0.57 -0.2
1,249,612 + CCNA_01145 0.58 -1.6
1,249,612 + CCNA_01145 0.58 -0.8
1,249,612 + CCNA_01145 0.58 -0.0
1,249,620 - CCNA_01145 0.58 -1.2
1,249,620 - CCNA_01145 0.58 +0.5
1,249,653 - CCNA_01145 0.60 -2.1
1,249,663 - CCNA_01145 0.61 -1.7
1,249,671 + CCNA_01145 0.61 -0.6
1,249,671 + CCNA_01145 0.61 -0.5
1,249,671 + CCNA_01145 0.61 -0.3
1,249,671 + CCNA_01145 0.61 +0.4
1,249,679 - CCNA_01145 0.62 -1.6
1,249,679 - CCNA_01145 0.62 +0.4
1,249,679 - CCNA_01145 0.62 -0.1
1,249,679 - CCNA_01145 0.62 -0.2
1,249,726 + CCNA_01145 0.65 +1.0
1,249,726 + CCNA_01145 0.65 -1.2
1,249,726 - CCNA_01145 0.65 -0.3
1,249,757 - CCNA_01145 0.67 -0.4
1,249,768 + CCNA_01145 0.68 -1.5
1,249,768 + CCNA_01145 0.68 +0.8
1,249,768 + CCNA_01145 0.68 +0.0
1,249,769 - CCNA_01145 0.68 -0.2
1,249,786 + CCNA_01145 0.69 -0.3
1,249,786 + CCNA_01145 0.69 +0.6
1,249,786 + CCNA_01145 0.69 -0.4
1,249,794 - CCNA_01145 0.69 -1.4
1,249,794 - CCNA_01145 0.69 -1.4
1,249,794 - CCNA_01145 0.69 -2.4
1,249,819 + CCNA_01145 0.71 +0.9
1,249,847 - CCNA_01145 0.72 +0.8
1,249,864 + CCNA_01145 0.74 +0.2
1,249,864 + CCNA_01145 0.74 +1.6
1,249,869 + CCNA_01145 0.74 -0.6
1,249,869 + CCNA_01145 0.74 -0.2
1,249,869 + CCNA_01145 0.74 -0.6
1,249,869 + CCNA_01145 0.74 +0.9
1,249,869 + CCNA_01145 0.74 -2.1
1,249,869 + CCNA_01145 0.74 -1.8
1,249,869 + CCNA_01145 0.74 +1.6
1,249,872 - CCNA_01145 0.74 -0.4
1,249,872 - CCNA_01145 0.74 -0.1
1,249,874 + CCNA_01145 0.74 -1.1
1,249,877 - CCNA_01145 0.74 -0.8
1,249,877 - CCNA_01145 0.74 -1.2
1,249,877 - CCNA_01145 0.74 -0.1
1,249,877 - CCNA_01145 0.74 -0.0
1,249,884 - CCNA_01145 0.75 -2.5
1,249,913 + CCNA_01145 0.77 -2.1
1,249,921 - CCNA_01145 0.77 +0.2
1,249,945 + CCNA_01145 0.79 -1.6
1,249,954 - CCNA_01145 0.79 -0.8
1,249,954 - CCNA_01145 0.79 -2.2
1,249,959 - CCNA_01145 0.79 -0.1
1,249,973 + CCNA_01145 0.80 -1.3
1,249,974 + CCNA_01145 0.80 +0.1
1,249,993 + CCNA_01145 0.82 +0.4
1,249,997 + CCNA_01145 0.82 -0.3
1,250,001 - CCNA_01145 0.82 -2.5
1,250,001 - CCNA_01145 0.82 -1.1
1,250,024 + CCNA_01145 0.83 -3.4
1,250,026 + CCNA_01145 0.84 -1.0
1,250,026 + CCNA_01145 0.84 -0.1
1,250,050 + CCNA_01145 0.85 +0.6
1,250,050 + CCNA_01145 0.85 -0.2
1,250,082 + CCNA_01145 0.87 -0.2
1,250,082 + CCNA_01145 0.87 -0.7
1,250,082 + CCNA_01145 0.87 +0.1
1,250,090 - CCNA_01145 0.88 +2.1
1,250,093 + CCNA_01145 0.88 +0.6
1,250,125 + CCNA_01145 0.90 -1.2
1,250,138 - -0.8
1,250,155 + -0.1
1,250,168 - -1.0
1,250,205 - -1.0
1,250,227 - +0.7
1,250,273 + -1.1
1,250,273 + -2.0
1,250,273 + +1.2
1,250,281 - -1.0
1,250,282 + -0.8
1,250,339 + -1.1
1,250,339 + -0.2
1,250,347 - -2.0
1,250,347 - -2.1
1,250,371 - -1.4
1,250,374 + +0.0
1,250,471 - -2.6
1,250,539 - +1.0
1,250,546 + -0.7
1,250,553 + -0.4
1,250,554 + +0.2
1,250,578 - -0.6
1,250,584 - -0.1
1,250,599 + +0.6
1,250,609 + CCNA_01147 0.10 -1.2
1,250,679 + CCNA_01147 0.23 -1.2
1,250,704 + CCNA_01147 0.27 -1.2
1,250,754 - CCNA_01147 0.36 +0.6
1,250,756 + CCNA_01147 0.37 -1.1
1,250,792 + CCNA_01147 0.43 -0.4
1,250,792 + CCNA_01147 0.43 +0.4
1,250,802 + CCNA_01147 0.45 -1.8
1,250,847 + CCNA_01147 0.53 -0.3
1,250,847 - CCNA_01147 0.53 -1.7
1,250,853 + CCNA_01147 0.54 +0.2
1,250,855 - CCNA_01147 0.55 -1.1
1,250,878 + CCNA_01147 0.59 +0.4
1,250,896 - CCNA_01147 0.62 -1.3
1,250,908 + CCNA_01147 0.64 +0.3
1,250,916 - CCNA_01147 0.66 -1.4
1,250,916 - CCNA_01147 0.66 +3.1
1,250,918 + CCNA_01147 0.66 -1.2
1,250,969 - CCNA_01147 0.76 -1.1
1,251,033 - CCNA_01147 0.87 -0.1
1,251,039 + CCNA_01147 0.88 -1.0
1,251,039 + CCNA_01147 0.88 -0.6
1,251,039 + CCNA_01147 0.88 -0.9
1,251,045 - CCNA_01147 0.89 -1.1
1,251,047 - CCNA_01147 0.90 -1.8
1,251,060 + -1.2
1,251,128 - +0.2
1,251,204 + -0.6
1,251,204 + +0.8
1,251,204 + +1.1
1,251,209 - -1.3
1,251,211 + CCNA_01148 0.11 +0.0
1,251,212 - CCNA_01148 0.11 +0.4
1,251,212 - CCNA_01148 0.11 -0.8
1,251,220 + CCNA_01148 0.16 -1.7
1,251,221 + CCNA_01148 0.16 -0.9
1,251,221 + CCNA_01148 0.16 -2.1
1,251,221 + CCNA_01148 0.16 -0.6
1,251,221 + CCNA_01148 0.16 -0.2
1,251,228 - CCNA_01148 0.20 -2.2
1,251,228 - CCNA_01148 0.20 -0.3
1,251,228 - CCNA_01148 0.20 -0.3
1,251,229 - CCNA_01148 0.21 -0.3
1,251,229 - CCNA_01148 0.21 -0.2
1,251,231 + CCNA_01148 0.22 -1.2
1,251,231 + CCNA_01148 0.22 +2.1
1,251,231 + CCNA_01148 0.22 -0.7
1,251,238 + CCNA_01148 0.26 -1.1
1,251,239 - CCNA_01148 0.27 -1.0
1,251,269 - CCNA_01148 0.44 +2.6
1,251,269 - CCNA_01148 0.44 -0.8
1,251,269 - CCNA_01148 0.44 +2.1
1,251,281 - CCNA_01148 0.50 -0.2
1,251,331 - CCNA_01148 0.79 +0.2
1,251,348 + CCNA_01148 0.88 -0.4
1,251,365 - +0.8
1,251,369 + +1.0
1,251,377 - +2.1
1,251,377 - +0.6
1,251,485 - +0.2
1,251,486 - +1.1
1,251,581 + +0.6
1,251,589 - +0.1
1,251,627 + -1.9
1,251,651 + CCNA_01149 0.11 -0.2
1,251,651 + CCNA_01149 0.11 +0.8
1,251,651 + CCNA_01149 0.11 +1.2
1,251,651 + CCNA_01149 0.11 -1.1
1,251,651 + CCNA_01149 0.11 -1.0
1,251,659 - CCNA_01149 0.11 -1.9
1,251,659 - CCNA_01149 0.11 +0.4
1,251,659 - CCNA_01149 0.11 +0.9
1,251,659 - CCNA_01149 0.11 -1.3
1,251,725 - CCNA_01149 0.13 -1.2
1,251,728 + CCNA_01149 0.14 +0.8
1,251,796 + CCNA_01149 0.16 -0.9
1,251,802 + CCNA_01149 0.16 -0.9
1,251,816 + CCNA_01149 0.17 -2.0
1,251,850 + CCNA_01149 0.18 -0.9
1,251,899 - CCNA_01149 0.20 -0.0
1,251,899 - CCNA_01149 0.20 +0.8
1,251,933 - CCNA_01149 0.21 -0.1
1,251,935 + CCNA_01149 0.21 -2.2
1,251,935 + CCNA_01149 0.21 -0.2
1,251,940 + CCNA_01149 0.22 -0.9
1,251,943 - CCNA_01149 0.22 +1.2
1,251,943 - CCNA_01149 0.22 +0.9
1,251,943 - CCNA_01149 0.22 -0.3
1,251,945 + CCNA_01149 0.22 -1.2
1,251,945 + CCNA_01149 0.22 -2.3
1,251,968 + CCNA_01149 0.23 -1.3
1,251,973 + CCNA_01149 0.23 -2.1
1,251,981 + CCNA_01149 0.23 +0.6
1,251,981 + CCNA_01149 0.23 +0.4
1,251,981 + CCNA_01149 0.23 -1.1
1,251,986 + CCNA_01149 0.23 -0.5
1,251,989 - CCNA_01149 0.23 -0.0
1,251,989 - CCNA_01149 0.23 -0.5
1,252,069 + CCNA_01149 0.26 -1.0

Or see this region's nucleotide sequence