Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01015

Experiment: PYE with copper (II) chloride 0.25 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with copper (II) chloride 0.25 mM
1,094,350	-		CCNA_01013	0.90	-1.9
1,094,404	+				+2.5
1,094,409	+				+1.0
1,094,424	-				+2.8
1,094,441	-				+4.0
1,094,515	+		CCNA_R0023	0.83	+1.2
1,094,532	-				+4.4
1,094,556	-				+4.1
1,094,582	+				+0.2
1,094,635	+				+0.9
1,094,640	+				+0.9
1,094,640	+				-0.5
1,094,640	+				-0.5
1,094,640	+				-0.0
1,094,640	+				-1.5
1,094,648	-				-0.4
1,094,648	-				-1.5
1,094,659	-				+0.4
1,094,671	-				+1.5
1,094,786	-				-0.2
1,094,786	-				+0.4
1,094,822	+				-0.0
1,094,836	-				+0.4
1,094,900	-		CCNA_01014	0.23	+1.9
1,094,923	-		CCNA_01014	0.28	-0.6
1,094,970	+		CCNA_01014	0.38	+2.5
1,094,978	-		CCNA_01014	0.39	+1.8
1,095,007	+		CCNA_01014	0.45	+0.3
1,095,022	-		CCNA_01014	0.48	+2.4
1,095,026	+		CCNA_01014	0.49	+3.9
1,095,073	+		CCNA_01014	0.59	+0.2
1,095,073	+		CCNA_01014	0.59	+2.5
1,095,074	-		CCNA_01014	0.59	+2.9
1,095,081	-		CCNA_01014	0.61	+1.4
1,095,081	-		CCNA_01014	0.61	+2.9
1,095,119	+		CCNA_01014	0.69	+2.0
1,095,127	-		CCNA_01014	0.70	+0.5
1,095,139	+		CCNA_01014	0.73	-0.5
1,095,190	-		CCNA_01014	0.84	+1.5
1,095,229	-				-1.0
1,095,232	+				+1.9
1,095,232	+				+2.5
1,095,232	+				+1.7
1,095,303	+				+2.8
1,095,365	-				+0.1
1,095,418	+				-2.4
1,095,441	+				-2.6
1,095,507	+		CCNA_01015	0.12	-3.1
1,095,542	+				+1.5
1,095,547	+		CCNA_01015	0.14	-2.9
1,095,605	+		CCNA_01015	0.17	-1.5
1,095,670	-		CCNA_01015	0.21	-1.6
1,095,676	-		CCNA_01015	0.22	-0.2
1,095,702	-		CCNA_01015	0.23	+0.5
1,095,712	+		CCNA_01015	0.24	-2.6
1,095,716	-		CCNA_01015	0.24	-0.2
1,095,761	+		CCNA_01015	0.27	-2.0
1,095,769	-		CCNA_01015	0.27	-0.2
1,095,769	-		CCNA_01015	0.27	-0.5
1,095,770	-		CCNA_01015	0.27	+0.1
1,095,824	+		CCNA_01015	0.30	+0.1
1,095,834	-		CCNA_01015	0.31	-0.3
1,095,882	+		CCNA_01015	0.34	-2.4
1,095,882	+		CCNA_01015	0.34	-1.8
1,095,905	+		CCNA_01015	0.35	-0.9
1,095,905	+		CCNA_01015	0.35	-0.2
1,095,913	-		CCNA_01015	0.36	-1.8
1,095,930	+		CCNA_01015	0.37	-3.5
1,095,930	+		CCNA_01015	0.37	-0.7
1,095,930	+		CCNA_01015	0.37	-1.0
1,095,930	+		CCNA_01015	0.37	-1.0
1,095,930	+		CCNA_01015	0.37	-0.0
1,095,937	+		CCNA_01015	0.37	-0.9
1,095,938	+		CCNA_01015	0.37	-2.6
1,095,938	-		CCNA_01015	0.37	-1.0
1,095,978	+		CCNA_01015	0.39	+0.4
1,096,020	+		CCNA_01015	0.42	-1.2
1,096,020	+		CCNA_01015	0.42	-3.3
1,096,020	+		CCNA_01015	0.42	-1.7
1,096,021	+		CCNA_01015	0.42	-3.3
1,096,021	+		CCNA_01015	0.42	-2.0
1,096,021	+		CCNA_01015	0.42	-1.6
1,096,021	+		CCNA_01015	0.42	-1.4
1,096,021	+		CCNA_01015	0.42	-3.0
1,096,021	+		CCNA_01015	0.42	-0.3
1,096,021	+		CCNA_01015	0.42	-0.8
1,096,021	+		CCNA_01015	0.42	-1.9
1,096,021	+		CCNA_01015	0.42	-2.0
1,096,021	+		CCNA_01015	0.42	-1.8
1,096,021	+		CCNA_01015	0.42	-1.5
1,096,021	+		CCNA_01015	0.42	-2.3
1,096,021	+		CCNA_01015	0.42	-1.7
1,096,028	-		CCNA_01015	0.42	-2.5
1,096,028	-		CCNA_01015	0.42	-1.2
1,096,029	-		CCNA_01015	0.42	-0.5
1,096,029	-		CCNA_01015	0.42	+1.5
1,096,029	-		CCNA_01015	0.42	+2.0
1,096,029	-		CCNA_01015	0.42	-0.2
1,096,029	-		CCNA_01015	0.42	-1.3
1,096,029	-		CCNA_01015	0.42	+0.2
1,096,029	-		CCNA_01015	0.42	-1.8
1,096,029	-		CCNA_01015	0.42	-1.5
1,096,029	-		CCNA_01015	0.42	-0.3
1,096,029	-		CCNA_01015	0.42	-0.9
1,096,029	-		CCNA_01015	0.42	-0.9
1,096,030	+		CCNA_01015	0.43	-1.4
1,096,067	-		CCNA_01015	0.45	-0.7
1,096,074	+		CCNA_01015	0.45	-2.2
1,096,127	-		CCNA_01015	0.48	-0.0
1,096,138	-		CCNA_01015	0.49	+0.7
1,096,167	+		CCNA_01015	0.51	-1.0
1,096,235	+		CCNA_01015	0.55	-2.7
1,096,235	+		CCNA_01015	0.55	-0.3
1,096,236	-		CCNA_01015	0.55	-0.3
1,096,236	-		CCNA_01015	0.55	-1.3
1,096,243	-		CCNA_01015	0.55	-2.5
1,096,277	-		CCNA_01015	0.57	+0.1
1,096,319	+		CCNA_01015	0.60	-1.4
1,096,322	+		CCNA_01015	0.60	-3.2
1,096,322	+		CCNA_01015	0.60	-0.4
1,096,341	-		CCNA_01015	0.61	+0.7
1,096,392	+		CCNA_01015	0.64	-3.2
1,096,399	+		CCNA_01015	0.64	-3.2
1,096,421	+		CCNA_01015	0.66	-1.3
1,096,433	-		CCNA_01015	0.66	-0.9
1,096,440	+		CCNA_01015	0.67	-0.0
1,096,461	+		CCNA_01015	0.68	-3.3
1,096,493	-		CCNA_01015	0.70	-2.1
1,096,495	-		CCNA_01015	0.70	+0.2
1,096,503	-		CCNA_01015	0.71	-0.5
1,096,524	-		CCNA_01015	0.72	-1.2
1,096,570	+		CCNA_01015	0.75	-2.3
1,096,570	+		CCNA_01015	0.75	-2.6
1,096,578	-		CCNA_01015	0.75	-2.3
1,096,583	-		CCNA_01015	0.75	-0.5
1,096,583	-		CCNA_01015	0.75	-0.5
1,096,588	-		CCNA_01015	0.76	-1.0
1,096,603	-		CCNA_01015	0.77	-0.5
1,096,606	+		CCNA_01015	0.77	-1.6
1,096,614	+		CCNA_01015	0.77	-3.5
1,096,614	+		CCNA_01015	0.77	-0.2
1,096,614	+		CCNA_01015	0.77	-1.0
1,096,614	+		CCNA_01015	0.77	-1.1
1,096,614	+		CCNA_01015	0.77	-2.5
1,096,640	+		CCNA_01015	0.79	-1.6
1,096,671	-		CCNA_01015	0.81	-1.0
1,096,694	+		CCNA_01015	0.82	-1.2
1,096,695	-		CCNA_01015	0.82	+0.2
1,096,704	+		CCNA_01015	0.83	-2.7
1,096,750	+		CCNA_01015	0.85	-2.4
1,096,750	+		CCNA_01015	0.85	-2.7
1,096,750	+		CCNA_01015	0.85	-2.1
1,096,758	-		CCNA_01015	0.86	+0.6
1,096,758	-		CCNA_01015	0.86	-1.1
1,096,764	+		CCNA_01015	0.86	-2.6
1,096,764	-		CCNA_01015	0.86	+1.5
1,096,786	-		CCNA_01015	0.87	-1.2
1,096,812	+		CCNA_01015	0.89	-1.2
1,096,812	+		CCNA_01015	0.89	-2.0
1,096,820	-		CCNA_01015	0.89	-0.7
1,096,820	-		CCNA_01015	0.89	+1.0
1,096,857	-				-2.0
1,096,877	+				-1.7
1,096,877	+				-0.3
1,096,915	+				-1.8
1,096,922	+				-0.5
1,096,922	+				-1.4
1,096,922	+				-2.7
1,096,922	+				-3.6
1,096,922	+				-1.0
1,096,922	+				-3.2
1,096,928	-				-1.3
1,096,930	-				-1.7
1,096,930	-				-0.7
1,096,938	+				+1.2
1,096,967	+				-0.2
1,096,977	+				-0.7
1,097,040	+				-2.6
1,097,048	-				-2.4
1,097,085	+				+0.1
1,097,085	+				-2.0
1,097,094	+		CCNA_01016	0.11	-0.8
1,097,094	+		CCNA_01016	0.11	-3.1
1,097,102	-		CCNA_01016	0.12	-0.6
1,097,102	-		CCNA_01016	0.12	+1.0
1,097,102	-		CCNA_01016	0.12	-0.5
1,097,118	-		CCNA_01016	0.14	-0.2
1,097,145	+		CCNA_01016	0.17	-2.0
1,097,145	+		CCNA_01016	0.17	-0.5
1,097,145	+		CCNA_01016	0.17	-2.1
1,097,153	-		CCNA_01016	0.17	-1.7
1,097,161	+		CCNA_01016	0.18	-2.4
1,097,161	+		CCNA_01016	0.18	-2.5
1,097,164	-		CCNA_01016	0.19	-2.5
1,097,169	-		CCNA_01016	0.19	-1.1
1,097,174	-		CCNA_01016	0.20	+0.2
1,097,191	-		CCNA_01016	0.22	-2.3
1,097,283	+		CCNA_01016	0.32	-0.3
1,097,284	+		CCNA_01016	0.32	-1.0
1,097,294	+		CCNA_01016	0.33	-3.1
1,097,321	+		CCNA_01016	0.36	-2.2
1,097,329	-		CCNA_01016	0.37	-1.9
1,097,376	+		CCNA_01016	0.42	-1.4
1,097,384	-		CCNA_01016	0.43	-0.4
1,097,384	-		CCNA_01016	0.43	-0.6
1,097,391	+		CCNA_01016	0.44	-1.9
1,097,391	+		CCNA_01016	0.44	-2.1
1,097,391	+		CCNA_01016	0.44	-1.9
1,097,396	+		CCNA_01016	0.44	-2.2
1,097,399	-		CCNA_01016	0.44	+0.2
1,097,399	-		CCNA_01016	0.44	-2.0
1,097,401	+		CCNA_01016	0.45	-1.9
1,097,404	-		CCNA_01016	0.45	-3.2
1,097,429	+		CCNA_01016	0.48	+0.3
1,097,437	-		CCNA_01016	0.49	+0.1
1,097,472	-		CCNA_01016	0.52	-2.5
1,097,473	+		CCNA_01016	0.53	-2.4
1,097,476	-		CCNA_01016	0.53	-2.7
1,097,476	-		CCNA_01016	0.53	-2.5
1,097,480	+		CCNA_01016	0.53	-1.1
1,097,495	+		CCNA_01016	0.55	-1.0
1,097,515	+		CCNA_01016	0.57	-2.1
1,097,555	-		CCNA_01016	0.62	-0.5
1,097,569	+		CCNA_01016	0.63	-2.4
1,097,572	-		CCNA_01016	0.63	-0.8
1,097,574	+		CCNA_01016	0.64	-0.9
1,097,589	-		CCNA_01016	0.65	-0.5
1,097,592	+		CCNA_01016	0.66	-1.1
1,097,598	+		CCNA_01016	0.66	-3.3
1,097,600	+		CCNA_01016	0.67	-1.5
1,097,608	-		CCNA_01016	0.67	-0.5
1,097,623	-		CCNA_01016	0.69	+0.3
1,097,660	+				+2.5
1,097,671	+		CCNA_01016	0.74	-3.8
1,097,679	-		CCNA_01016	0.75	-1.8
1,097,689	+		CCNA_01016	0.76	-0.4
1,097,714	+		CCNA_01016	0.79	-3.2
1,097,735	+		CCNA_01016	0.81	-2.8
1,097,803	+		CCNA_01016	0.89	-2.0
1,097,828	+				-1.0
1,097,906	+				+1.4
1,097,906	+				-0.5
1,097,914	-				-1.9
1,097,955	+				+1.1
1,097,963	-				-0.8
1,097,976	+				+1.5
1,097,976	+				+0.5
1,097,981	-				-2.2
1,097,984	-				-0.5