Experiment: PYE with copper (II) chloride 0.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00536 and CCNA_00537 are separated by 113 nucleotides CCNA_00537 and CCNA_00538 are separated by 218 nucleotides
CCNA_00536: CCNA_00536 - DNA-directed RNA polymerase beta chain, at 547,831 to 551,901
_00536
CCNA_00537: CCNA_00537 - DNA-directed RNA polymerase beta, at 552,015 to 556,205
_00537
CCNA_00538: CCNA_00538 - methyl-accepting chemotaxis protein, at 556,424 to 558,220
_00538
Position (kb) 552
553
554
555
556
557 Strain fitness (log2 ratio) -1
0
1
2
3 at 551.900 kb on + strand at 551.900 kb on + strand at 551.937 kb on + strand at 556.087 kb on + strand at 556.109 kb on + strand at 556.142 kb on - strand at 556.226 kb on - strand at 556.232 kb on + strand at 556.289 kb on + strand at 556.297 kb on - strand at 556.418 kb on + strand at 556.440 kb on + strand at 556.448 kb on - strand at 556.507 kb on - strand at 556.509 kb on + strand at 556.612 kb on + strand, within CCNA_00538 at 556.612 kb on + strand, within CCNA_00538 at 556.615 kb on - strand, within CCNA_00538 at 556.624 kb on + strand, within CCNA_00538 at 556.689 kb on + strand, within CCNA_00538 at 556.689 kb on + strand, within CCNA_00538 at 556.689 kb on + strand, within CCNA_00538 at 556.697 kb on - strand, within CCNA_00538 at 556.721 kb on - strand, within CCNA_00538 at 556.738 kb on + strand, within CCNA_00538 at 556.738 kb on + strand, within CCNA_00538 at 556.780 kb on + strand, within CCNA_00538 at 556.788 kb on - strand, within CCNA_00538 at 556.804 kb on + strand, within CCNA_00538 at 556.804 kb on + strand, within CCNA_00538 at 556.812 kb on - strand, within CCNA_00538 at 556.817 kb on - strand at 556.838 kb on + strand, within CCNA_00538 at 556.838 kb on + strand, within CCNA_00538 at 556.838 kb on + strand, within CCNA_00538 at 556.838 kb on + strand, within CCNA_00538 at 556.838 kb on + strand, within CCNA_00538 at 556.838 kb on + strand, within CCNA_00538 at 556.840 kb on + strand, within CCNA_00538 at 556.846 kb on - strand, within CCNA_00538 at 556.896 kb on + strand, within CCNA_00538 at 556.925 kb on + strand, within CCNA_00538 at 556.933 kb on + strand at 556.935 kb on - strand, within CCNA_00538 at 556.941 kb on - strand, within CCNA_00538 at 556.941 kb on - strand, within CCNA_00538 at 556.980 kb on + strand, within CCNA_00538 at 556.985 kb on + strand, within CCNA_00538 at 556.988 kb on - strand, within CCNA_00538 at 556.990 kb on + strand, within CCNA_00538 at 557.002 kb on + strand, within CCNA_00538 at 557.028 kb on + strand, within CCNA_00538 at 557.062 kb on + strand, within CCNA_00538 at 557.070 kb on - strand, within CCNA_00538 at 557.124 kb on + strand, within CCNA_00538 at 557.154 kb on - strand, within CCNA_00538 at 557.173 kb on + strand, within CCNA_00538 at 557.181 kb on - strand, within CCNA_00538 at 557.184 kb on + strand, within CCNA_00538 at 557.194 kb on - strand, within CCNA_00538 at 557.194 kb on - strand, within CCNA_00538
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with copper (II) chloride 0.25 mM remove 551,900 + +2.0 551,900 + +2.3 551,937 + +1.9 556,087 + +2.2 556,109 + +2.3 556,142 - -0.1 556,226 - +2.3 556,232 + +2.4 556,289 + +2.7 556,297 - -0.7 556,418 + +0.8 556,440 + +0.7 556,448 - +2.2 556,507 - +0.6 556,509 + +0.5 556,612 + CCNA_00538 0.10 -0.2 556,612 + CCNA_00538 0.10 +1.3 556,615 - CCNA_00538 0.11 -0.1 556,624 + CCNA_00538 0.11 +1.1 556,689 + CCNA_00538 0.15 +0.8 556,689 + CCNA_00538 0.15 +1.5 556,689 + CCNA_00538 0.15 +0.7 556,697 - CCNA_00538 0.15 -0.3 556,721 - CCNA_00538 0.17 -1.5 556,738 + CCNA_00538 0.17 +1.0 556,738 + CCNA_00538 0.17 +0.5 556,780 + CCNA_00538 0.20 +1.1 556,788 - CCNA_00538 0.20 +0.7 556,804 + CCNA_00538 0.21 -0.2 556,804 + CCNA_00538 0.21 +0.7 556,812 - CCNA_00538 0.22 +0.9 556,817 - +2.2 556,838 + CCNA_00538 0.23 +1.0 556,838 + CCNA_00538 0.23 -0.5 556,838 + CCNA_00538 0.23 +0.6 556,838 + CCNA_00538 0.23 -0.3 556,838 + CCNA_00538 0.23 +2.1 556,838 + CCNA_00538 0.23 +3.5 556,840 + CCNA_00538 0.23 +0.6 556,846 - CCNA_00538 0.23 -0.1 556,896 + CCNA_00538 0.26 +0.2 556,925 + CCNA_00538 0.28 +0.7 556,933 + +2.2 556,935 - CCNA_00538 0.28 +2.8 556,941 - CCNA_00538 0.29 +0.7 556,941 - CCNA_00538 0.29 -0.3 556,980 + CCNA_00538 0.31 +0.3 556,985 + CCNA_00538 0.31 +2.2 556,988 - CCNA_00538 0.31 -0.2 556,990 + CCNA_00538 0.31 -0.5 557,002 + CCNA_00538 0.32 +2.1 557,028 + CCNA_00538 0.34 +1.0 557,062 + CCNA_00538 0.36 +1.5 557,070 - CCNA_00538 0.36 +0.6 557,124 + CCNA_00538 0.39 +0.8 557,154 - CCNA_00538 0.41 -1.1 557,173 + CCNA_00538 0.42 +0.5 557,181 - CCNA_00538 0.42 -1.4 557,184 + CCNA_00538 0.42 +0.5 557,194 - CCNA_00538 0.43 -1.2 557,194 - CCNA_00538 0.43 +0.9
Or see this region's nucleotide sequence