Experiment: PYE with copper (II) chloride 0.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00437 and CCNA_00438 are separated by 211 nucleotides CCNA_00438 and CCNA_00439 are separated by 296 nucleotides
CCNA_00437: CCNA_00437 - methyl-accepting chemotaxis protein, at 443,064 to 444,677
_00437
CCNA_00438: CCNA_00438 - hypothetical protein, at 444,889 to 445,200
_00438
CCNA_00439: CCNA_00439 - methyl-accepting chemotaxis protein, at 445,497 to 447,518
_00439
Position (kb) 444
445
446 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 443.910 kb on - strand, within CCNA_00437 at 443.924 kb on - strand, within CCNA_00437 at 443.966 kb on + strand, within CCNA_00437 at 443.980 kb on - strand, within CCNA_00437 at 443.980 kb on - strand, within CCNA_00437 at 444.031 kb on - strand, within CCNA_00437 at 444.037 kb on - strand, within CCNA_00437 at 444.069 kb on - strand, within CCNA_00437 at 444.095 kb on - strand, within CCNA_00437 at 444.097 kb on + strand, within CCNA_00437 at 444.119 kb on + strand, within CCNA_00437 at 444.127 kb on - strand, within CCNA_00437 at 444.127 kb on - strand, within CCNA_00437 at 444.138 kb on + strand, within CCNA_00437 at 444.143 kb on + strand, within CCNA_00437 at 444.168 kb on + strand, within CCNA_00437 at 444.169 kb on + strand, within CCNA_00437 at 444.218 kb on + strand, within CCNA_00437 at 444.218 kb on - strand, within CCNA_00437 at 444.226 kb on - strand, within CCNA_00437 at 444.230 kb on + strand, within CCNA_00437 at 444.238 kb on - strand, within CCNA_00437 at 444.238 kb on - strand, within CCNA_00437 at 444.238 kb on - strand, within CCNA_00437 at 444.251 kb on + strand, within CCNA_00437 at 444.264 kb on - strand, within CCNA_00437 at 444.296 kb on + strand, within CCNA_00437 at 444.368 kb on - strand, within CCNA_00437 at 444.376 kb on - strand, within CCNA_00437 at 444.376 kb on - strand, within CCNA_00437 at 444.380 kb on + strand, within CCNA_00437 at 444.383 kb on - strand, within CCNA_00437 at 444.387 kb on + strand, within CCNA_00437 at 444.388 kb on - strand, within CCNA_00437 at 444.388 kb on - strand, within CCNA_00437 at 444.411 kb on + strand, within CCNA_00437 at 444.419 kb on - strand, within CCNA_00437 at 444.420 kb on + strand, within CCNA_00437 at 444.420 kb on + strand, within CCNA_00437 at 444.420 kb on + strand, within CCNA_00437 at 444.428 kb on - strand, within CCNA_00437 at 444.494 kb on + strand, within CCNA_00437 at 444.503 kb on + strand, within CCNA_00437 at 444.511 kb on - strand, within CCNA_00437 at 444.513 kb on + strand, within CCNA_00437 at 444.520 kb on + strand at 444.530 kb on - strand at 444.541 kb on - strand at 444.686 kb on + strand at 444.694 kb on - strand at 444.708 kb on - strand at 444.708 kb on - strand at 444.710 kb on - strand at 444.715 kb on + strand at 444.723 kb on - strand at 444.723 kb on - strand at 444.738 kb on + strand at 444.758 kb on + strand at 444.758 kb on + strand at 444.758 kb on + strand at 444.766 kb on + strand at 444.766 kb on - strand at 444.827 kb on - strand at 444.827 kb on - strand at 444.832 kb on - strand at 444.848 kb on - strand at 444.857 kb on - strand at 444.858 kb on - strand at 444.985 kb on + strand, within CCNA_00438 at 445.006 kb on + strand, within CCNA_00438 at 445.006 kb on + strand, within CCNA_00438 at 445.013 kb on + strand, within CCNA_00438 at 445.014 kb on - strand, within CCNA_00438 at 445.021 kb on - strand, within CCNA_00438 at 445.051 kb on - strand, within CCNA_00438 at 445.055 kb on + strand, within CCNA_00438 at 445.055 kb on + strand, within CCNA_00438 at 445.063 kb on - strand, within CCNA_00438 at 445.063 kb on - strand, within CCNA_00438 at 445.083 kb on - strand, within CCNA_00438 at 445.092 kb on + strand, within CCNA_00438 at 445.108 kb on - strand, within CCNA_00438 at 445.116 kb on - strand, within CCNA_00438 at 445.141 kb on + strand, within CCNA_00438 at 445.202 kb on - strand at 445.202 kb on - strand at 445.359 kb on - strand at 445.376 kb on - strand at 445.378 kb on + strand at 445.491 kb on + strand at 445.499 kb on - strand at 445.499 kb on - strand at 445.519 kb on + strand at 445.526 kb on + strand at 445.526 kb on + strand at 445.526 kb on + strand at 445.526 kb on + strand at 445.526 kb on + strand at 445.534 kb on - strand at 445.534 kb on - strand at 445.534 kb on - strand at 445.534 kb on - strand at 445.534 kb on - strand at 445.567 kb on + strand at 445.575 kb on - strand at 445.599 kb on - strand at 445.611 kb on + strand at 445.650 kb on + strand at 445.684 kb on - strand at 445.691 kb on - strand at 445.774 kb on + strand, within CCNA_00439 at 445.782 kb on - strand, within CCNA_00439 at 445.782 kb on - strand, within CCNA_00439 at 445.790 kb on + strand, within CCNA_00439 at 445.832 kb on + strand, within CCNA_00439 at 445.840 kb on - strand, within CCNA_00439 at 445.883 kb on + strand, within CCNA_00439 at 445.906 kb on + strand, within CCNA_00439 at 445.906 kb on + strand, within CCNA_00439 at 445.932 kb on - strand, within CCNA_00439 at 445.952 kb on - strand, within CCNA_00439 at 445.955 kb on + strand, within CCNA_00439 at 445.962 kb on + strand, within CCNA_00439 at 445.975 kb on - strand, within CCNA_00439 at 445.999 kb on + strand, within CCNA_00439 at 445.999 kb on + strand, within CCNA_00439 at 446.024 kb on - strand, within CCNA_00439 at 446.045 kb on + strand, within CCNA_00439 at 446.051 kb on + strand, within CCNA_00439 at 446.070 kb on - strand, within CCNA_00439 at 446.070 kb on - strand, within CCNA_00439 at 446.090 kb on + strand, within CCNA_00439 at 446.096 kb on + strand, within CCNA_00439 at 446.103 kb on + strand, within CCNA_00439 at 446.108 kb on + strand, within CCNA_00439 at 446.108 kb on + strand, within CCNA_00439 at 446.121 kb on - strand, within CCNA_00439 at 446.147 kb on + strand, within CCNA_00439 at 446.162 kb on + strand, within CCNA_00439 at 446.169 kb on + strand, within CCNA_00439
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with copper (II) chloride 0.25 mM remove 443,910 - CCNA_00437 0.52 +1.0 443,924 - CCNA_00437 0.53 +1.2 443,966 + CCNA_00437 0.56 -1.9 443,980 - CCNA_00437 0.57 -0.8 443,980 - CCNA_00437 0.57 -1.1 444,031 - CCNA_00437 0.60 +0.1 444,037 - CCNA_00437 0.60 -0.2 444,069 - CCNA_00437 0.62 +0.6 444,095 - CCNA_00437 0.64 -0.2 444,097 + CCNA_00437 0.64 -1.0 444,119 + CCNA_00437 0.65 +1.0 444,127 - CCNA_00437 0.66 +1.2 444,127 - CCNA_00437 0.66 -0.6 444,138 + CCNA_00437 0.67 -0.3 444,143 + CCNA_00437 0.67 +0.0 444,168 + CCNA_00437 0.68 +0.4 444,169 + CCNA_00437 0.68 -0.4 444,218 + CCNA_00437 0.71 -1.2 444,218 - CCNA_00437 0.71 -1.4 444,226 - CCNA_00437 0.72 -0.1 444,230 + CCNA_00437 0.72 +0.4 444,238 - CCNA_00437 0.73 +0.6 444,238 - CCNA_00437 0.73 -1.4 444,238 - CCNA_00437 0.73 -0.5 444,251 + CCNA_00437 0.74 -0.5 444,264 - CCNA_00437 0.74 -1.2 444,296 + CCNA_00437 0.76 -2.0 444,368 - CCNA_00437 0.81 +0.0 444,376 - CCNA_00437 0.81 -1.0 444,376 - CCNA_00437 0.81 -0.4 444,380 + CCNA_00437 0.82 +1.1 444,383 - CCNA_00437 0.82 +1.6 444,387 + CCNA_00437 0.82 +1.8 444,388 - CCNA_00437 0.82 +1.7 444,388 - CCNA_00437 0.82 +2.1 444,411 + CCNA_00437 0.83 -1.1 444,419 - CCNA_00437 0.84 -0.5 444,420 + CCNA_00437 0.84 +0.9 444,420 + CCNA_00437 0.84 -1.0 444,420 + CCNA_00437 0.84 -2.3 444,428 - CCNA_00437 0.85 +1.6 444,494 + CCNA_00437 0.89 -1.7 444,503 + CCNA_00437 0.89 -0.5 444,511 - CCNA_00437 0.90 -3.0 444,513 + CCNA_00437 0.90 -2.3 444,520 + -1.2 444,530 - -2.3 444,541 - -0.5 444,686 + -0.0 444,694 - -1.0 444,708 - +0.3 444,708 - -0.8 444,710 - -0.9 444,715 + -0.1 444,723 - -0.7 444,723 - +2.0 444,738 + +2.0 444,758 + -1.6 444,758 + -0.5 444,758 + +1.4 444,766 + +2.3 444,766 - -0.4 444,827 - -0.4 444,827 - -1.5 444,832 - +0.4 444,848 - +0.4 444,857 - -0.3 444,858 - -0.7 444,985 + CCNA_00438 0.31 -0.2 445,006 + CCNA_00438 0.38 -0.4 445,006 + CCNA_00438 0.38 -1.5 445,013 + CCNA_00438 0.40 -1.8 445,014 - CCNA_00438 0.40 +1.8 445,021 - CCNA_00438 0.42 +1.9 445,051 - CCNA_00438 0.52 +1.6 445,055 + CCNA_00438 0.53 -0.2 445,055 + CCNA_00438 0.53 -0.9 445,063 - CCNA_00438 0.56 +0.3 445,063 - CCNA_00438 0.56 +2.0 445,083 - CCNA_00438 0.62 +1.5 445,092 + CCNA_00438 0.65 +1.4 445,108 - CCNA_00438 0.70 +3.2 445,116 - CCNA_00438 0.73 +1.6 445,141 + CCNA_00438 0.81 -2.1 445,202 - -0.0 445,202 - -2.6 445,359 - -0.5 445,376 - -1.9 445,378 + -2.3 445,491 + +0.1 445,499 - +2.6 445,499 - -1.7 445,519 + +1.9 445,526 + +0.1 445,526 + +0.6 445,526 + +0.7 445,526 + +1.5 445,526 + +2.4 445,534 - -0.7 445,534 - -1.6 445,534 - -1.2 445,534 - -0.5 445,534 - -0.1 445,567 + +1.5 445,575 - +1.4 445,599 - -0.8 445,611 + +1.8 445,650 + +1.7 445,684 - -0.3 445,691 - -0.1 445,774 + CCNA_00439 0.14 +0.4 445,782 - CCNA_00439 0.14 -0.7 445,782 - CCNA_00439 0.14 -0.3 445,790 + CCNA_00439 0.14 +1.4 445,832 + CCNA_00439 0.17 +1.3 445,840 - CCNA_00439 0.17 -1.4 445,883 + CCNA_00439 0.19 +1.7 445,906 + CCNA_00439 0.20 +4.2 445,906 + CCNA_00439 0.20 -0.7 445,932 - CCNA_00439 0.22 +1.7 445,952 - CCNA_00439 0.23 -0.9 445,955 + CCNA_00439 0.23 +2.0 445,962 + CCNA_00439 0.23 +2.1 445,975 - CCNA_00439 0.24 -0.1 445,999 + CCNA_00439 0.25 +1.5 445,999 + CCNA_00439 0.25 +1.1 446,024 - CCNA_00439 0.26 +1.0 446,045 + CCNA_00439 0.27 +1.9 446,051 + CCNA_00439 0.27 +1.2 446,070 - CCNA_00439 0.28 -0.1 446,070 - CCNA_00439 0.28 -1.6 446,090 + CCNA_00439 0.29 +2.2 446,096 + CCNA_00439 0.30 +2.2 446,103 + CCNA_00439 0.30 +1.2 446,108 + CCNA_00439 0.30 +1.1 446,108 + CCNA_00439 0.30 +1.7 446,121 - CCNA_00439 0.31 -1.8 446,147 + CCNA_00439 0.32 +1.7 446,162 + CCNA_00439 0.33 +1.2 446,169 + CCNA_00439 0.33 +1.0
Or see this region's nucleotide sequence