Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00352

Experiment: PYE with copper (II) chloride 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00351 and CCNA_00352 are separated by 86 nucleotidesCCNA_00352 and CCNA_00353 are separated by 124 nucleotides CCNA_00351: CCNA_00351 - primosomal protein N', at 366,112 to 368,271 _00351 CCNA_00352: CCNA_00352 - integral membrane protein, at 368,358 to 369,155 _00352 CCNA_00353: CCNA_00353 - O-antigen acetylase, at 369,280 to 370,374 _00353 Position (kb) 368 369 370Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 368.292 kb on - strandat 368.328 kb on + strandat 368.357 kb on + strandat 368.409 kb on - strandat 368.409 kb on - strandat 368.421 kb on - strandat 368.422 kb on - strandat 368.433 kb on + strandat 368.433 kb on + strandat 368.433 kb on + strandat 368.433 kb on + strandat 368.433 kb on + strandat 368.441 kb on - strand, within CCNA_00352at 368.441 kb on - strand, within CCNA_00352at 368.441 kb on - strand, within CCNA_00352at 368.441 kb on - strand, within CCNA_00352at 368.441 kb on - strand, within CCNA_00352at 368.441 kb on - strand, within CCNA_00352at 368.441 kb on - strand, within CCNA_00352at 368.441 kb on - strand, within CCNA_00352at 368.441 kb on - strand, within CCNA_00352at 368.441 kb on - strand, within CCNA_00352at 368.448 kb on + strand, within CCNA_00352at 368.449 kb on + strand, within CCNA_00352at 368.451 kb on - strand, within CCNA_00352at 368.456 kb on - strand, within CCNA_00352at 368.456 kb on - strand, within CCNA_00352at 368.457 kb on - strand, within CCNA_00352at 368.487 kb on + strand, within CCNA_00352at 368.500 kb on - strand, within CCNA_00352at 368.527 kb on + strand, within CCNA_00352at 368.559 kb on + strand, within CCNA_00352at 368.585 kb on + strandat 368.631 kb on + strand, within CCNA_00352at 368.638 kb on + strand, within CCNA_00352at 368.697 kb on - strand, within CCNA_00352at 368.721 kb on + strand, within CCNA_00352at 368.737 kb on + strand, within CCNA_00352at 368.737 kb on + strand, within CCNA_00352at 368.744 kb on - strand, within CCNA_00352at 368.745 kb on - strand, within CCNA_00352at 368.745 kb on - strand, within CCNA_00352at 368.745 kb on - strand, within CCNA_00352at 368.745 kb on - strand, within CCNA_00352at 368.756 kb on + strand, within CCNA_00352at 368.772 kb on + strand, within CCNA_00352at 368.845 kb on - strand, within CCNA_00352at 368.848 kb on + strand, within CCNA_00352at 368.848 kb on + strand, within CCNA_00352at 368.895 kb on - strand, within CCNA_00352at 368.912 kb on + strand, within CCNA_00352at 368.921 kb on - strand, within CCNA_00352at 368.921 kb on - strand, within CCNA_00352at 368.979 kb on - strand, within CCNA_00352at 368.979 kb on - strand, within CCNA_00352at 368.979 kb on - strand, within CCNA_00352at 368.989 kb on - strand, within CCNA_00352at 368.989 kb on - strand, within CCNA_00352at 369.016 kb on - strand, within CCNA_00352at 369.022 kb on + strand, within CCNA_00352at 369.030 kb on - strand, within CCNA_00352at 369.030 kb on - strand, within CCNA_00352at 369.052 kb on - strand, within CCNA_00352at 369.080 kb on - strandat 369.080 kb on - strandat 369.115 kb on - strandat 369.125 kb on + strandat 369.166 kb on - strandat 369.168 kb on + strandat 369.179 kb on - strandat 369.196 kb on + strandat 369.204 kb on + strandat 369.286 kb on + strandat 369.296 kb on + strandat 369.304 kb on - strandat 369.340 kb on - strandat 369.348 kb on + strandat 369.377 kb on + strandat 369.385 kb on + strandat 369.403 kb on - strand, within CCNA_00353at 369.440 kb on + strand, within CCNA_00353at 369.471 kb on + strand, within CCNA_00353at 369.481 kb on + strand, within CCNA_00353at 369.525 kb on + strand, within CCNA_00353at 369.525 kb on + strand, within CCNA_00353at 369.525 kb on + strand, within CCNA_00353at 369.525 kb on + strand, within CCNA_00353at 369.525 kb on + strand, within CCNA_00353at 369.525 kb on + strand, within CCNA_00353at 369.532 kb on + strand, within CCNA_00353at 369.533 kb on - strand, within CCNA_00353at 369.533 kb on - strand, within CCNA_00353at 369.533 kb on - strand, within CCNA_00353at 369.533 kb on - strand, within CCNA_00353at 369.533 kb on - strand, within CCNA_00353at 369.552 kb on + strand, within CCNA_00353at 369.594 kb on + strand, within CCNA_00353at 369.618 kb on + strand, within CCNA_00353at 369.621 kb on - strand, within CCNA_00353at 369.626 kb on - strand, within CCNA_00353at 369.626 kb on - strand, within CCNA_00353at 369.652 kb on + strand, within CCNA_00353at 369.659 kb on + strand, within CCNA_00353at 369.667 kb on - strand, within CCNA_00353at 369.682 kb on + strand, within CCNA_00353at 369.682 kb on + strand, within CCNA_00353at 369.690 kb on - strand, within CCNA_00353at 369.690 kb on - strand, within CCNA_00353at 369.701 kb on + strand, within CCNA_00353at 369.712 kb on + strand, within CCNA_00353at 369.727 kb on + strand, within CCNA_00353at 369.735 kb on - strand, within CCNA_00353at 369.742 kb on + strand, within CCNA_00353at 369.742 kb on + strand, within CCNA_00353at 369.790 kb on + strand, within CCNA_00353at 369.790 kb on + strand, within CCNA_00353at 369.790 kb on + strand, within CCNA_00353at 369.790 kb on + strand, within CCNA_00353at 369.798 kb on - strand, within CCNA_00353at 369.800 kb on + strand, within CCNA_00353at 369.808 kb on - strand, within CCNA_00353at 369.808 kb on - strand, within CCNA_00353at 369.819 kb on + strand, within CCNA_00353at 369.819 kb on + strand, within CCNA_00353at 369.819 kb on + strand, within CCNA_00353at 369.827 kb on - strand, within CCNA_00353at 369.827 kb on - strand, within CCNA_00353at 369.827 kb on - strand, within CCNA_00353at 369.827 kb on - strand, within CCNA_00353at 369.829 kb on - strand, within CCNA_00353at 369.888 kb on + strand, within CCNA_00353at 369.900 kb on + strand, within CCNA_00353at 369.907 kb on + strand, within CCNA_00353at 369.907 kb on + strand, within CCNA_00353at 369.907 kb on + strand, within CCNA_00353at 369.907 kb on + strand, within CCNA_00353at 369.907 kb on + strand, within CCNA_00353at 369.907 kb on + strand, within CCNA_00353at 369.915 kb on - strand, within CCNA_00353at 369.915 kb on - strand, within CCNA_00353at 369.915 kb on - strand, within CCNA_00353at 369.937 kb on - strand, within CCNA_00353at 369.941 kb on - strand, within CCNA_00353at 369.982 kb on + strand, within CCNA_00353at 369.982 kb on + strand, within CCNA_00353at 370.017 kb on - strand, within CCNA_00353at 370.022 kb on - strand, within CCNA_00353at 370.027 kb on + strand, within CCNA_00353at 370.027 kb on + strand, within CCNA_00353at 370.045 kb on + strand, within CCNA_00353at 370.053 kb on - strand, within CCNA_00353at 370.071 kb on + strand, within CCNA_00353at 370.079 kb on - strand, within CCNA_00353at 370.080 kb on + strand, within CCNA_00353at 370.080 kb on + strand, within CCNA_00353

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with copper (II) chloride 0.25 mM
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368,292 - -0.0
368,328 + +0.3
368,357 + -0.5
368,409 - +1.8
368,409 - +1.8
368,421 - +2.3
368,422 - +0.8
368,433 + -0.9
368,433 + +0.4
368,433 + -1.5
368,433 + -0.3
368,433 + -1.2
368,441 - CCNA_00352 0.10 +2.3
368,441 - CCNA_00352 0.10 +2.3
368,441 - CCNA_00352 0.10 +2.3
368,441 - CCNA_00352 0.10 +2.7
368,441 - CCNA_00352 0.10 +4.2
368,441 - CCNA_00352 0.10 +2.8
368,441 - CCNA_00352 0.10 +2.0
368,441 - CCNA_00352 0.10 +3.6
368,441 - CCNA_00352 0.10 +2.1
368,441 - CCNA_00352 0.10 +2.6
368,448 + CCNA_00352 0.11 -0.0
368,449 + CCNA_00352 0.11 -1.0
368,451 - CCNA_00352 0.12 +1.9
368,456 - CCNA_00352 0.12 +2.1
368,456 - CCNA_00352 0.12 +2.0
368,457 - CCNA_00352 0.12 +1.9
368,487 + CCNA_00352 0.16 -1.0
368,500 - CCNA_00352 0.18 +2.3
368,527 + CCNA_00352 0.21 -0.9
368,559 + CCNA_00352 0.25 -2.0
368,585 + +2.3
368,631 + CCNA_00352 0.34 -1.3
368,638 + CCNA_00352 0.35 -1.7
368,697 - CCNA_00352 0.42 +1.2
368,721 + CCNA_00352 0.45 -0.2
368,737 + CCNA_00352 0.47 -0.4
368,737 + CCNA_00352 0.47 +1.8
368,744 - CCNA_00352 0.48 +1.3
368,745 - CCNA_00352 0.48 +1.5
368,745 - CCNA_00352 0.48 +1.8
368,745 - CCNA_00352 0.48 +1.3
368,745 - CCNA_00352 0.48 +0.6
368,756 + CCNA_00352 0.50 -2.1
368,772 + CCNA_00352 0.52 -1.0
368,845 - CCNA_00352 0.61 +1.1
368,848 + CCNA_00352 0.61 -0.2
368,848 + CCNA_00352 0.61 -1.5
368,895 - CCNA_00352 0.67 +0.5
368,912 + CCNA_00352 0.69 +1.9
368,921 - CCNA_00352 0.71 +1.0
368,921 - CCNA_00352 0.71 +0.6
368,979 - CCNA_00352 0.78 +0.9
368,979 - CCNA_00352 0.78 +2.3
368,979 - CCNA_00352 0.78 +0.4
368,989 - CCNA_00352 0.79 +1.5
368,989 - CCNA_00352 0.79 +2.4
369,016 - CCNA_00352 0.82 +2.1
369,022 + CCNA_00352 0.83 -0.6
369,030 - CCNA_00352 0.84 +3.3
369,030 - CCNA_00352 0.84 +1.4
369,052 - CCNA_00352 0.87 +1.9
369,080 - +0.3
369,080 - +4.0
369,115 - +0.6
369,125 + -0.3
369,166 - +1.7
369,168 + +1.3
369,179 - +1.3
369,196 + +0.1
369,204 + -0.5
369,286 + -0.4
369,296 + -0.9
369,304 - +0.3
369,340 - -0.4
369,348 + +0.7
369,377 + +1.4
369,385 + +0.9
369,403 - CCNA_00353 0.11 +0.6
369,440 + CCNA_00353 0.15 -2.7
369,471 + CCNA_00353 0.17 -0.0
369,481 + CCNA_00353 0.18 +0.4
369,525 + CCNA_00353 0.22 +1.4
369,525 + CCNA_00353 0.22 -1.3
369,525 + CCNA_00353 0.22 +1.0
369,525 + CCNA_00353 0.22 -0.7
369,525 + CCNA_00353 0.22 -0.2
369,525 + CCNA_00353 0.22 -1.1
369,532 + CCNA_00353 0.23 +1.0
369,533 - CCNA_00353 0.23 -0.8
369,533 - CCNA_00353 0.23 -1.9
369,533 - CCNA_00353 0.23 -1.9
369,533 - CCNA_00353 0.23 -1.1
369,533 - CCNA_00353 0.23 -0.5
369,552 + CCNA_00353 0.25 +0.6
369,594 + CCNA_00353 0.29 -0.6
369,618 + CCNA_00353 0.31 -0.3
369,621 - CCNA_00353 0.31 -0.4
369,626 - CCNA_00353 0.32 +0.5
369,626 - CCNA_00353 0.32 -1.4
369,652 + CCNA_00353 0.34 -0.0
369,659 + CCNA_00353 0.35 +0.3
369,667 - CCNA_00353 0.35 -1.0
369,682 + CCNA_00353 0.37 -1.0
369,682 + CCNA_00353 0.37 +0.8
369,690 - CCNA_00353 0.37 -1.1
369,690 - CCNA_00353 0.37 -1.9
369,701 + CCNA_00353 0.38 -0.0
369,712 + CCNA_00353 0.39 -1.7
369,727 + CCNA_00353 0.41 -2.6
369,735 - CCNA_00353 0.42 -1.0
369,742 + CCNA_00353 0.42 +0.7
369,742 + CCNA_00353 0.42 -0.8
369,790 + CCNA_00353 0.47 -1.1
369,790 + CCNA_00353 0.47 -0.3
369,790 + CCNA_00353 0.47 +0.4
369,790 + CCNA_00353 0.47 +0.3
369,798 - CCNA_00353 0.47 +0.3
369,800 + CCNA_00353 0.47 -0.0
369,808 - CCNA_00353 0.48 -0.6
369,808 - CCNA_00353 0.48 +0.4
369,819 + CCNA_00353 0.49 -1.0
369,819 + CCNA_00353 0.49 -0.6
369,819 + CCNA_00353 0.49 -0.5
369,827 - CCNA_00353 0.50 -0.0
369,827 - CCNA_00353 0.50 -1.0
369,827 - CCNA_00353 0.50 -0.7
369,827 - CCNA_00353 0.50 -1.0
369,829 - CCNA_00353 0.50 -0.8
369,888 + CCNA_00353 0.56 +0.3
369,900 + CCNA_00353 0.57 -0.6
369,907 + CCNA_00353 0.57 +0.2
369,907 + CCNA_00353 0.57 -0.7
369,907 + CCNA_00353 0.57 -0.4
369,907 + CCNA_00353 0.57 +1.3
369,907 + CCNA_00353 0.57 +0.6
369,907 + CCNA_00353 0.57 +0.5
369,915 - CCNA_00353 0.58 -1.2
369,915 - CCNA_00353 0.58 +2.2
369,915 - CCNA_00353 0.58 -1.5
369,937 - CCNA_00353 0.60 +0.5
369,941 - CCNA_00353 0.60 +0.7
369,982 + CCNA_00353 0.64 -2.1
369,982 + CCNA_00353 0.64 -1.2
370,017 - CCNA_00353 0.67 -0.8
370,022 - CCNA_00353 0.68 -0.5
370,027 + CCNA_00353 0.68 -0.4
370,027 + CCNA_00353 0.68 -0.7
370,045 + CCNA_00353 0.70 -1.1
370,053 - CCNA_00353 0.71 +0.7
370,071 + CCNA_00353 0.72 +0.4
370,079 - CCNA_00353 0.73 -1.9
370,080 + CCNA_00353 0.73 -0.0
370,080 + CCNA_00353 0.73 +0.2

Or see this region's nucleotide sequence