Experiment: PYE with copper (II) chloride 0.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00267 and CCNA_00268 are separated by 257 nucleotides CCNA_00268 and CCNA_00269 are separated by 145 nucleotides CCNA_00269 and CCNA_00270 are separated by 126 nucleotides
CCNA_00267: CCNA_00267 - MutT-like protein, at 280,931 to 281,872
_00267
CCNA_00268: CCNA_00268 - DNA polymerase III subunit gamma/tau, at 282,130 to 283,956
_00268
CCNA_00269: CCNA_00269 - YbaB/EbfC-family DNA-binding protein, at 284,102 to 284,431
_00269
CCNA_00270: CCNA_00270 - Recombination protein recR, at 284,558 to 285,160
_00270
Position (kb) 282
283
284 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 281.132 kb on - strand, within CCNA_00267 at 281.133 kb on - strand, within CCNA_00267 at 281.133 kb on - strand, within CCNA_00267 at 281.136 kb on + strand, within CCNA_00267 at 281.143 kb on - strand, within CCNA_00267 at 281.143 kb on - strand, within CCNA_00267 at 281.143 kb on - strand, within CCNA_00267 at 281.143 kb on - strand, within CCNA_00267 at 281.222 kb on - strand, within CCNA_00267 at 281.246 kb on + strand, within CCNA_00267 at 281.261 kb on - strand, within CCNA_00267 at 281.261 kb on - strand, within CCNA_00267 at 281.351 kb on + strand, within CCNA_00267 at 281.378 kb on - strand, within CCNA_00267 at 281.391 kb on - strand, within CCNA_00267 at 281.408 kb on - strand, within CCNA_00267 at 281.416 kb on - strand, within CCNA_00267 at 281.421 kb on - strand, within CCNA_00267 at 281.477 kb on - strand, within CCNA_00267 at 281.532 kb on - strand, within CCNA_00267 at 281.548 kb on - strand, within CCNA_00267 at 281.548 kb on - strand, within CCNA_00267 at 281.614 kb on + strand, within CCNA_00267 at 281.619 kb on + strand, within CCNA_00267 at 281.619 kb on + strand, within CCNA_00267 at 281.622 kb on - strand, within CCNA_00267 at 281.627 kb on - strand, within CCNA_00267 at 281.627 kb on - strand, within CCNA_00267 at 281.651 kb on + strand, within CCNA_00267 at 281.651 kb on + strand, within CCNA_00267 at 281.651 kb on + strand, within CCNA_00267 at 281.651 kb on + strand, within CCNA_00267 at 281.651 kb on + strand, within CCNA_00267 at 281.651 kb on + strand, within CCNA_00267 at 281.658 kb on - strand, within CCNA_00267 at 281.659 kb on - strand, within CCNA_00267 at 281.659 kb on - strand, within CCNA_00267 at 281.659 kb on - strand, within CCNA_00267 at 281.659 kb on - strand, within CCNA_00267 at 281.682 kb on - strand, within CCNA_00267 at 281.684 kb on + strand, within CCNA_00267 at 281.720 kb on - strand, within CCNA_00267 at 281.729 kb on - strand, within CCNA_00267 at 281.729 kb on - strand, within CCNA_00267 at 281.787 kb on - strand at 281.800 kb on + strand at 281.825 kb on + strand at 281.825 kb on + strand at 281.833 kb on - strand at 281.833 kb on - strand at 281.833 kb on - strand at 281.833 kb on - strand at 281.833 kb on - strand at 281.833 kb on - strand at 281.833 kb on - strand at 281.833 kb on - strand at 281.834 kb on - strand at 281.854 kb on - strand at 281.855 kb on - strand at 281.857 kb on - strand at 281.868 kb on + strand at 281.873 kb on + strand at 281.873 kb on + strand at 281.876 kb on + strand at 281.876 kb on + strand at 281.876 kb on - strand at 281.878 kb on + strand at 281.880 kb on + strand at 281.886 kb on - strand at 281.886 kb on - strand at 281.888 kb on - strand at 281.908 kb on + strand at 281.916 kb on - strand at 281.918 kb on - strand at 282.080 kb on + strand at 282.113 kb on + strand at 282.113 kb on + strand at 282.115 kb on + strand at 282.119 kb on - strand at 282.216 kb on + strand at 282.266 kb on - strand at 282.291 kb on + strand at 283.924 kb on + strand at 283.979 kb on - strand at 283.988 kb on + strand at 283.988 kb on + strand at 283.989 kb on - strand at 283.996 kb on - strand at 283.996 kb on - strand at 283.996 kb on - strand at 283.996 kb on - strand at 283.996 kb on - strand at 283.996 kb on - strand at 283.996 kb on - strand at 283.996 kb on - strand at 284.032 kb on + strand at 284.050 kb on + strand at 284.058 kb on - strand at 284.058 kb on - strand at 284.058 kb on - strand at 284.058 kb on - strand at 284.058 kb on - strand at 284.058 kb on - strand at 284.059 kb on - strand at 284.108 kb on - strand at 284.121 kb on + strand at 284.122 kb on + strand at 284.131 kb on + strand at 284.131 kb on + strand at 284.131 kb on + strand at 284.131 kb on + strand at 284.131 kb on + strand at 284.131 kb on + strand at 284.139 kb on - strand, within CCNA_00269 at 284.139 kb on - strand, within CCNA_00269 at 284.139 kb on - strand at 284.139 kb on - strand, within CCNA_00269 at 284.139 kb on - strand, within CCNA_00269 at 284.139 kb on - strand, within CCNA_00269 at 284.140 kb on - strand, within CCNA_00269 at 284.182 kb on + strand, within CCNA_00269 at 284.182 kb on + strand, within CCNA_00269 at 284.185 kb on - strand, within CCNA_00269 at 284.220 kb on + strand, within CCNA_00269 at 284.220 kb on + strand, within CCNA_00269 at 284.228 kb on + strand, within CCNA_00269 at 284.228 kb on - strand, within CCNA_00269 at 284.238 kb on + strand, within CCNA_00269 at 284.239 kb on + strand, within CCNA_00269 at 284.240 kb on + strand, within CCNA_00269 at 284.260 kb on + strand, within CCNA_00269 at 284.290 kb on + strand, within CCNA_00269 at 284.291 kb on + strand, within CCNA_00269 at 284.309 kb on - strand, within CCNA_00269 at 284.311 kb on + strand, within CCNA_00269 at 284.314 kb on - strand, within CCNA_00269 at 284.319 kb on - strand, within CCNA_00269 at 284.338 kb on + strand, within CCNA_00269 at 284.349 kb on + strand, within CCNA_00269 at 284.359 kb on + strand, within CCNA_00269 at 284.359 kb on + strand, within CCNA_00269 at 284.377 kb on - strand, within CCNA_00269 at 284.425 kb on + strand at 284.448 kb on + strand at 284.462 kb on - strand at 284.462 kb on - strand at 284.464 kb on + strand at 284.464 kb on + strand at 284.464 kb on + strand at 284.465 kb on + strand at 284.470 kb on + strand at 284.470 kb on + strand at 284.470 kb on + strand at 284.470 kb on + strand at 284.470 kb on + strand at 284.470 kb on + strand at 284.472 kb on - strand at 284.478 kb on - strand at 284.478 kb on - strand at 284.478 kb on - strand at 284.478 kb on - strand at 284.478 kb on - strand at 284.482 kb on + strand at 284.482 kb on + strand at 284.485 kb on - strand at 284.490 kb on - strand at 284.505 kb on + strand at 284.505 kb on + strand at 284.505 kb on + strand at 284.513 kb on - strand at 284.513 kb on - strand at 284.514 kb on - strand at 284.524 kb on - strand at 284.538 kb on + strand at 284.554 kb on + strand at 284.569 kb on + strand at 284.569 kb on + strand at 284.613 kb on - strand at 284.648 kb on + strand, within CCNA_00270 at 284.648 kb on + strand, within CCNA_00270 at 284.656 kb on - strand, within CCNA_00270 at 284.656 kb on - strand, within CCNA_00270 at 284.656 kb on - strand, within CCNA_00270 at 284.656 kb on - strand, within CCNA_00270 at 284.695 kb on - strand, within CCNA_00270 at 284.716 kb on + strand, within CCNA_00270 at 284.716 kb on + strand, within CCNA_00270 at 284.724 kb on - strand, within CCNA_00270 at 284.724 kb on - strand, within CCNA_00270 at 284.806 kb on + strand, within CCNA_00270 at 284.841 kb on - strand, within CCNA_00270 at 284.841 kb on - strand, within CCNA_00270 at 284.841 kb on - strand, within CCNA_00270 at 284.842 kb on - strand, within CCNA_00270 at 284.842 kb on - strand, within CCNA_00270 at 284.846 kb on - strand, within CCNA_00270 at 284.846 kb on - strand, within CCNA_00270 at 284.884 kb on + strand, within CCNA_00270 at 284.905 kb on + strand, within CCNA_00270 at 284.910 kb on + strand, within CCNA_00270
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with copper (II) chloride 0.25 mM remove 281,132 - CCNA_00267 0.21 +0.9 281,133 - CCNA_00267 0.21 +1.4 281,133 - CCNA_00267 0.21 +0.8 281,136 + CCNA_00267 0.22 -0.5 281,143 - CCNA_00267 0.23 +1.5 281,143 - CCNA_00267 0.23 +0.9 281,143 - CCNA_00267 0.23 +0.8 281,143 - CCNA_00267 0.23 +1.7 281,222 - CCNA_00267 0.31 +0.2 281,246 + CCNA_00267 0.33 -2.2 281,261 - CCNA_00267 0.35 +1.4 281,261 - CCNA_00267 0.35 -0.9 281,351 + CCNA_00267 0.45 -0.7 281,378 - CCNA_00267 0.47 -0.2 281,391 - CCNA_00267 0.49 +0.7 281,408 - CCNA_00267 0.51 -0.9 281,416 - CCNA_00267 0.51 +0.5 281,421 - CCNA_00267 0.52 -0.4 281,477 - CCNA_00267 0.58 +1.3 281,532 - CCNA_00267 0.64 -0.0 281,548 - CCNA_00267 0.65 +0.1 281,548 - CCNA_00267 0.65 +0.7 281,614 + CCNA_00267 0.73 -2.7 281,619 + CCNA_00267 0.73 -0.2 281,619 + CCNA_00267 0.73 +0.5 281,622 - CCNA_00267 0.73 +0.2 281,627 - CCNA_00267 0.74 +0.5 281,627 - CCNA_00267 0.74 -0.4 281,651 + CCNA_00267 0.76 -0.8 281,651 + CCNA_00267 0.76 -0.7 281,651 + CCNA_00267 0.76 -2.0 281,651 + CCNA_00267 0.76 +1.0 281,651 + CCNA_00267 0.76 +0.6 281,651 + CCNA_00267 0.76 -0.2 281,658 - CCNA_00267 0.77 +0.7 281,659 - CCNA_00267 0.77 +1.7 281,659 - CCNA_00267 0.77 +0.7 281,659 - CCNA_00267 0.77 -0.5 281,659 - CCNA_00267 0.77 +1.1 281,682 - CCNA_00267 0.80 +0.7 281,684 + CCNA_00267 0.80 -1.5 281,720 - CCNA_00267 0.84 +0.6 281,729 - CCNA_00267 0.85 +0.7 281,729 - CCNA_00267 0.85 +0.8 281,787 - +0.2 281,800 + -2.1 281,825 + -1.9 281,825 + -1.2 281,833 - +1.0 281,833 - -0.4 281,833 - +0.2 281,833 - +2.1 281,833 - -0.2 281,833 - +0.6 281,833 - +1.2 281,833 - +0.2 281,834 - +0.3 281,854 - +1.3 281,855 - +0.4 281,857 - -1.2 281,868 + -1.0 281,873 + -1.2 281,873 + -0.2 281,876 + -0.9 281,876 + -0.6 281,876 - +1.7 281,878 + +0.7 281,880 + -1.3 281,886 - -0.6 281,886 - -1.0 281,888 - +1.2 281,908 + +1.5 281,916 - +0.1 281,918 - -0.5 282,080 + -0.4 282,113 + -0.9 282,113 + -0.6 282,115 + -0.1 282,119 - +1.7 282,216 + +0.9 282,266 - -1.1 282,291 + +0.8 283,924 + +2.6 283,979 - -0.7 283,988 + +4.4 283,988 + +1.0 283,989 - -0.4 283,996 - -0.6 283,996 - +0.9 283,996 - -1.3 283,996 - -0.7 283,996 - +1.7 283,996 - +1.7 283,996 - +1.0 283,996 - -0.7 284,032 + +0.3 284,050 + +1.1 284,058 - -2.7 284,058 - -1.4 284,058 - -1.2 284,058 - -0.3 284,058 - -2.2 284,058 - -1.6 284,059 - +0.0 284,108 - -2.1 284,121 + -0.2 284,122 + -0.9 284,131 + -0.8 284,131 + +2.3 284,131 + +0.0 284,131 + -1.4 284,131 + +0.8 284,131 + +0.0 284,139 - CCNA_00269 0.11 +2.0 284,139 - CCNA_00269 0.11 +2.1 284,139 - +3.9 284,139 - CCNA_00269 0.11 +2.3 284,139 - CCNA_00269 0.11 +1.6 284,139 - CCNA_00269 0.11 +1.5 284,140 - CCNA_00269 0.12 +2.4 284,182 + CCNA_00269 0.24 +0.7 284,182 + CCNA_00269 0.24 +0.5 284,185 - CCNA_00269 0.25 -0.9 284,220 + CCNA_00269 0.36 -0.2 284,220 + CCNA_00269 0.36 +1.1 284,228 + CCNA_00269 0.38 +1.0 284,228 - CCNA_00269 0.38 -0.0 284,238 + CCNA_00269 0.41 +1.0 284,239 + CCNA_00269 0.42 +1.0 284,240 + CCNA_00269 0.42 +0.9 284,260 + CCNA_00269 0.48 +1.4 284,290 + CCNA_00269 0.57 +0.7 284,291 + CCNA_00269 0.57 +0.2 284,309 - CCNA_00269 0.63 -2.2 284,311 + CCNA_00269 0.63 +0.4 284,314 - CCNA_00269 0.64 +0.1 284,319 - CCNA_00269 0.66 +0.6 284,338 + CCNA_00269 0.72 +1.5 284,349 + CCNA_00269 0.75 +0.3 284,359 + CCNA_00269 0.78 +0.4 284,359 + CCNA_00269 0.78 +0.8 284,377 - CCNA_00269 0.83 +1.0 284,425 + +1.0 284,448 + +1.6 284,462 - -1.5 284,462 - -1.5 284,464 + +1.1 284,464 + +1.4 284,464 + +1.1 284,465 + +1.2 284,470 + +0.7 284,470 + +0.3 284,470 + +0.6 284,470 + -0.2 284,470 + +0.7 284,470 + +0.8 284,472 - +1.3 284,478 - +1.6 284,478 - +0.4 284,478 - +1.3 284,478 - +1.2 284,478 - +1.6 284,482 + +0.9 284,482 + +1.0 284,485 - -0.5 284,490 - -0.6 284,505 + -0.2 284,505 + +0.4 284,505 + +0.4 284,513 - -0.4 284,513 - -0.8 284,514 - +0.2 284,524 - -2.1 284,538 + -0.2 284,554 + +0.0 284,569 + +0.6 284,569 + +0.3 284,613 - +1.7 284,648 + CCNA_00270 0.15 +0.9 284,648 + CCNA_00270 0.15 +0.3 284,656 - CCNA_00270 0.16 +0.4 284,656 - CCNA_00270 0.16 -0.4 284,656 - CCNA_00270 0.16 +1.0 284,656 - CCNA_00270 0.16 -0.4 284,695 - CCNA_00270 0.23 -1.5 284,716 + CCNA_00270 0.26 +0.3 284,716 + CCNA_00270 0.26 +0.1 284,724 - CCNA_00270 0.28 +1.3 284,724 - CCNA_00270 0.28 +1.3 284,806 + CCNA_00270 0.41 +0.5 284,841 - CCNA_00270 0.47 -0.4 284,841 - CCNA_00270 0.47 -0.9 284,841 - CCNA_00270 0.47 -0.7 284,842 - CCNA_00270 0.47 -1.1 284,842 - CCNA_00270 0.47 -0.1 284,846 - CCNA_00270 0.48 -1.7 284,846 - CCNA_00270 0.48 -0.7 284,884 + CCNA_00270 0.54 +0.5 284,905 + CCNA_00270 0.58 +1.2 284,910 + CCNA_00270 0.58 +1.4
Or see this region's nucleotide sequence