Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00209

Experiment: PYE with copper (II) chloride 0.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00208 and CCNA_00209 are separated by 80 nucleotidesCCNA_00209 and CCNA_00210 are separated by 187 nucleotides CCNA_00208: CCNA_00208 - type 1 glutamine amidotransferase (GATase1)-like domain protein, at 222,283 to 223,272 _00208 CCNA_00209: CCNA_00209 - undecaprenyl-phosphomannose:protein mannosyltransferase, at 223,353 to 224,927 _00209 CCNA_00210: CCNA_00210 - TonB-dependent receptor, at 225,115 to 227,526 _00210 Position (kb) 223 224 225Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 222.411 kb on - strand, within CCNA_00208at 222.411 kb on - strand, within CCNA_00208at 222.413 kb on + strand, within CCNA_00208at 222.483 kb on + strand, within CCNA_00208at 222.537 kb on - strand, within CCNA_00208at 222.537 kb on - strand, within CCNA_00208at 222.573 kb on + strand, within CCNA_00208at 222.641 kb on + strandat 222.654 kb on - strand, within CCNA_00208at 222.666 kb on + strand, within CCNA_00208at 222.673 kb on + strand, within CCNA_00208at 222.701 kb on + strand, within CCNA_00208at 222.715 kb on - strand, within CCNA_00208at 222.737 kb on - strand, within CCNA_00208at 222.739 kb on + strand, within CCNA_00208at 222.753 kb on - strand, within CCNA_00208at 222.759 kb on + strand, within CCNA_00208at 222.769 kb on + strand, within CCNA_00208at 222.769 kb on + strand, within CCNA_00208at 222.774 kb on + strand, within CCNA_00208at 222.782 kb on - strand, within CCNA_00208at 222.791 kb on + strand, within CCNA_00208at 222.791 kb on + strand, within CCNA_00208at 222.791 kb on + strand, within CCNA_00208at 222.791 kb on + strand, within CCNA_00208at 222.791 kb on + strand, within CCNA_00208at 222.799 kb on - strand, within CCNA_00208at 222.799 kb on - strand, within CCNA_00208at 222.799 kb on - strand, within CCNA_00208at 222.843 kb on - strand, within CCNA_00208at 222.844 kb on + strand, within CCNA_00208at 222.844 kb on + strand, within CCNA_00208at 222.852 kb on - strand, within CCNA_00208at 222.852 kb on - strand, within CCNA_00208at 222.852 kb on - strand, within CCNA_00208at 222.852 kb on - strand, within CCNA_00208at 222.852 kb on - strand, within CCNA_00208at 222.852 kb on - strand, within CCNA_00208at 222.856 kb on + strand, within CCNA_00208at 222.857 kb on - strand, within CCNA_00208at 222.893 kb on + strand, within CCNA_00208at 222.893 kb on + strand, within CCNA_00208at 222.896 kb on - strand, within CCNA_00208at 222.896 kb on - strand, within CCNA_00208at 222.898 kb on + strand, within CCNA_00208at 222.901 kb on - strand, within CCNA_00208at 222.901 kb on - strand, within CCNA_00208at 222.922 kb on + strand, within CCNA_00208at 222.922 kb on + strand, within CCNA_00208at 222.922 kb on + strand, within CCNA_00208at 222.922 kb on + strand, within CCNA_00208at 222.930 kb on - strand, within CCNA_00208at 222.930 kb on - strand, within CCNA_00208at 222.930 kb on - strand, within CCNA_00208at 222.930 kb on - strand, within CCNA_00208at 222.956 kb on + strand, within CCNA_00208at 222.981 kb on + strand, within CCNA_00208at 222.981 kb on + strand, within CCNA_00208at 222.981 kb on + strand, within CCNA_00208at 222.989 kb on - strand, within CCNA_00208at 222.989 kb on - strand, within CCNA_00208at 222.989 kb on - strand, within CCNA_00208at 223.003 kb on + strand, within CCNA_00208at 223.011 kb on - strand, within CCNA_00208at 223.025 kb on - strand, within CCNA_00208at 223.030 kb on + strand, within CCNA_00208at 223.030 kb on + strand, within CCNA_00208at 223.030 kb on + strand, within CCNA_00208at 223.030 kb on + strand, within CCNA_00208at 223.030 kb on + strand, within CCNA_00208at 223.030 kb on + strand, within CCNA_00208at 223.035 kb on + strand, within CCNA_00208at 223.035 kb on + strand, within CCNA_00208at 223.038 kb on - strand, within CCNA_00208at 223.061 kb on + strand, within CCNA_00208at 223.061 kb on + strand, within CCNA_00208at 223.061 kb on + strand, within CCNA_00208at 223.061 kb on + strand, within CCNA_00208at 223.061 kb on + strand, within CCNA_00208at 223.061 kb on + strand, within CCNA_00208at 223.061 kb on + strand, within CCNA_00208at 223.069 kb on - strand, within CCNA_00208at 223.069 kb on - strand, within CCNA_00208at 223.069 kb on - strand, within CCNA_00208at 223.089 kb on - strand, within CCNA_00208at 223.127 kb on + strand, within CCNA_00208at 223.135 kb on - strand, within CCNA_00208at 223.164 kb on + strand, within CCNA_00208at 223.172 kb on - strand, within CCNA_00208at 223.201 kb on - strandat 223.206 kb on - strandat 223.207 kb on - strandat 223.251 kb on + strandat 223.270 kb on + strandat 223.300 kb on - strandat 223.311 kb on - strandat 223.353 kb on - strandat 223.366 kb on + strandat 223.366 kb on + strandat 223.366 kb on + strandat 223.366 kb on + strandat 223.366 kb on + strandat 223.374 kb on - strandat 223.434 kb on - strandat 223.434 kb on - strandat 223.434 kb on - strandat 223.456 kb on + strandat 223.469 kb on - strandat 223.498 kb on + strandat 223.498 kb on + strandat 223.506 kb on - strandat 223.551 kb on - strand, within CCNA_00209at 223.602 kb on + strand, within CCNA_00209at 223.609 kb on - strand, within CCNA_00209at 223.619 kb on + strand, within CCNA_00209at 223.635 kb on - strand, within CCNA_00209at 223.655 kb on + strand, within CCNA_00209at 223.689 kb on + strand, within CCNA_00209at 223.722 kb on + strand, within CCNA_00209at 223.729 kb on + strand, within CCNA_00209at 223.743 kb on - strand, within CCNA_00209at 223.761 kb on + strand, within CCNA_00209at 223.802 kb on + strand, within CCNA_00209at 223.838 kb on + strand, within CCNA_00209at 223.838 kb on + strand, within CCNA_00209at 223.838 kb on + strand, within CCNA_00209at 223.846 kb on - strand, within CCNA_00209at 223.846 kb on - strand, within CCNA_00209at 223.846 kb on - strand, within CCNA_00209at 223.851 kb on - strand, within CCNA_00209at 223.962 kb on + strand, within CCNA_00209at 223.987 kb on + strand, within CCNA_00209at 223.995 kb on - strand, within CCNA_00209at 224.041 kb on + strand, within CCNA_00209at 224.052 kb on - strand, within CCNA_00209at 224.060 kb on + strand, within CCNA_00209at 224.136 kb on + strand, within CCNA_00209at 224.141 kb on - strand, within CCNA_00209at 224.141 kb on - strand, within CCNA_00209at 224.187 kb on - strand, within CCNA_00209at 224.197 kb on - strand, within CCNA_00209at 224.223 kb on + strand, within CCNA_00209at 224.231 kb on - strand, within CCNA_00209at 224.231 kb on - strand, within CCNA_00209at 224.231 kb on - strand, within CCNA_00209at 224.231 kb on - strand, within CCNA_00209at 224.276 kb on + strand, within CCNA_00209at 224.284 kb on - strand, within CCNA_00209at 224.301 kb on - strand, within CCNA_00209at 224.301 kb on - strand, within CCNA_00209at 224.370 kb on + strand, within CCNA_00209at 224.378 kb on - strand, within CCNA_00209at 224.384 kb on - strand, within CCNA_00209at 224.420 kb on - strand, within CCNA_00209at 224.425 kb on - strand, within CCNA_00209at 224.480 kb on + strand, within CCNA_00209at 224.492 kb on - strand, within CCNA_00209at 224.502 kb on - strand, within CCNA_00209at 224.545 kb on - strand, within CCNA_00209at 224.604 kb on - strand, within CCNA_00209at 224.644 kb on + strand, within CCNA_00209at 224.710 kb on + strand, within CCNA_00209at 224.789 kb on - strandat 224.789 kb on - strandat 224.789 kb on - strandat 224.805 kb on - strandat 224.823 kb on - strandat 224.823 kb on - strandat 224.886 kb on + strandat 224.886 kb on + strandat 224.932 kb on - strandat 224.934 kb on + strandat 224.993 kb on + strandat 225.127 kb on + strandat 225.138 kb on + strandat 225.143 kb on + strandat 225.146 kb on - strandat 225.148 kb on + strandat 225.148 kb on + strandat 225.148 kb on + strandat 225.148 kb on + strandat 225.156 kb on - strandat 225.156 kb on - strandat 225.181 kb on + strandat 225.181 kb on + strandat 225.247 kb on + strandat 225.249 kb on + strandat 225.273 kb on + strandat 225.301 kb on + strandat 225.340 kb on + strandat 225.340 kb on + strandat 225.472 kb on - strand, within CCNA_00210at 225.472 kb on - strand, within CCNA_00210at 225.508 kb on - strand, within CCNA_00210at 225.545 kb on - strand, within CCNA_00210at 225.562 kb on + strand, within CCNA_00210at 225.572 kb on + strand, within CCNA_00210at 225.606 kb on - strand, within CCNA_00210at 225.606 kb on - strand, within CCNA_00210at 225.622 kb on + strand, within CCNA_00210at 225.629 kb on - strand, within CCNA_00210at 225.652 kb on + strand, within CCNA_00210at 225.653 kb on - strand, within CCNA_00210at 225.691 kb on + strand, within CCNA_00210at 225.691 kb on + strand, within CCNA_00210at 225.691 kb on + strand, within CCNA_00210at 225.691 kb on + strand, within CCNA_00210at 225.693 kb on + strand, within CCNA_00210at 225.693 kb on + strand, within CCNA_00210at 225.699 kb on - strand, within CCNA_00210at 225.699 kb on - strand, within CCNA_00210at 225.708 kb on + strand, within CCNA_00210at 225.817 kb on - strand, within CCNA_00210at 225.846 kb on - strand, within CCNA_00210at 225.899 kb on + strand, within CCNA_00210at 225.907 kb on - strand, within CCNA_00210at 225.926 kb on + strand, within CCNA_00210

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with copper (II) chloride 0.25 mM
remove
222,411 - CCNA_00208 0.13 -1.0
222,411 - CCNA_00208 0.13 +0.3
222,413 + CCNA_00208 0.13 +0.5
222,483 + CCNA_00208 0.20 -0.3
222,537 - CCNA_00208 0.26 -1.4
222,537 - CCNA_00208 0.26 -0.5
222,573 + CCNA_00208 0.29 +1.2
222,641 + +4.3
222,654 - CCNA_00208 0.37 -0.8
222,666 + CCNA_00208 0.39 -0.0
222,673 + CCNA_00208 0.39 -1.8
222,701 + CCNA_00208 0.42 +1.5
222,715 - CCNA_00208 0.44 -1.8
222,737 - CCNA_00208 0.46 -1.6
222,739 + CCNA_00208 0.46 -0.9
222,753 - CCNA_00208 0.47 -1.0
222,759 + CCNA_00208 0.48 -0.9
222,769 + CCNA_00208 0.49 -1.5
222,769 + CCNA_00208 0.49 -1.1
222,774 + CCNA_00208 0.50 +0.8
222,782 - CCNA_00208 0.50 -1.3
222,791 + CCNA_00208 0.51 +2.2
222,791 + CCNA_00208 0.51 +1.0
222,791 + CCNA_00208 0.51 +2.6
222,791 + CCNA_00208 0.51 +0.8
222,791 + CCNA_00208 0.51 +1.0
222,799 - CCNA_00208 0.52 -1.9
222,799 - CCNA_00208 0.52 -0.3
222,799 - CCNA_00208 0.52 -1.1
222,843 - CCNA_00208 0.57 -1.6
222,844 + CCNA_00208 0.57 +0.1
222,844 + CCNA_00208 0.57 +0.0
222,852 - CCNA_00208 0.57 -1.2
222,852 - CCNA_00208 0.57 +0.5
222,852 - CCNA_00208 0.57 -2.2
222,852 - CCNA_00208 0.57 +3.1
222,852 - CCNA_00208 0.57 -1.2
222,852 - CCNA_00208 0.57 -0.5
222,856 + CCNA_00208 0.58 -1.0
222,857 - CCNA_00208 0.58 -1.5
222,893 + CCNA_00208 0.62 +0.1
222,893 + CCNA_00208 0.62 +1.7
222,896 - CCNA_00208 0.62 -0.2
222,896 - CCNA_00208 0.62 -0.6
222,898 + CCNA_00208 0.62 +1.0
222,901 - CCNA_00208 0.62 -1.0
222,901 - CCNA_00208 0.62 -1.7
222,922 + CCNA_00208 0.65 -0.1
222,922 + CCNA_00208 0.65 +1.3
222,922 + CCNA_00208 0.65 +0.8
222,922 + CCNA_00208 0.65 -1.3
222,930 - CCNA_00208 0.65 +1.2
222,930 - CCNA_00208 0.65 -0.8
222,930 - CCNA_00208 0.65 -1.1
222,930 - CCNA_00208 0.65 -0.0
222,956 + CCNA_00208 0.68 +0.3
222,981 + CCNA_00208 0.71 -1.8
222,981 + CCNA_00208 0.71 -1.0
222,981 + CCNA_00208 0.71 -0.8
222,989 - CCNA_00208 0.71 -1.2
222,989 - CCNA_00208 0.71 -1.4
222,989 - CCNA_00208 0.71 -0.1
223,003 + CCNA_00208 0.73 -0.9
223,011 - CCNA_00208 0.74 -0.3
223,025 - CCNA_00208 0.75 +0.3
223,030 + CCNA_00208 0.75 +0.1
223,030 + CCNA_00208 0.75 -2.1
223,030 + CCNA_00208 0.75 -1.8
223,030 + CCNA_00208 0.75 +1.9
223,030 + CCNA_00208 0.75 +1.1
223,030 + CCNA_00208 0.75 -0.8
223,035 + CCNA_00208 0.76 +0.3
223,035 + CCNA_00208 0.76 -0.3
223,038 - CCNA_00208 0.76 -0.5
223,061 + CCNA_00208 0.79 -0.9
223,061 + CCNA_00208 0.79 -2.0
223,061 + CCNA_00208 0.79 +1.0
223,061 + CCNA_00208 0.79 -0.5
223,061 + CCNA_00208 0.79 +0.2
223,061 + CCNA_00208 0.79 -1.2
223,061 + CCNA_00208 0.79 -0.8
223,069 - CCNA_00208 0.79 -1.5
223,069 - CCNA_00208 0.79 -1.5
223,069 - CCNA_00208 0.79 -1.6
223,089 - CCNA_00208 0.81 +0.1
223,127 + CCNA_00208 0.85 -1.7
223,135 - CCNA_00208 0.86 +0.1
223,164 + CCNA_00208 0.89 +1.7
223,172 - CCNA_00208 0.90 -0.9
223,201 - -0.2
223,206 - -1.4
223,207 - -2.1
223,251 + -0.8
223,270 + -1.2
223,300 - -1.1
223,311 - -0.7
223,353 - -1.7
223,366 + -0.9
223,366 + -0.3
223,366 + +2.9
223,366 + +0.7
223,366 + -0.4
223,374 - +0.0
223,434 - +1.1
223,434 - +1.1
223,434 - +2.5
223,456 + -0.0
223,469 - -1.2
223,498 + -1.0
223,498 + -0.7
223,506 - -0.3
223,551 - CCNA_00209 0.13 -1.1
223,602 + CCNA_00209 0.16 -0.8
223,609 - CCNA_00209 0.16 -0.4
223,619 + CCNA_00209 0.17 +1.3
223,635 - CCNA_00209 0.18 +1.0
223,655 + CCNA_00209 0.19 -2.5
223,689 + CCNA_00209 0.21 +0.3
223,722 + CCNA_00209 0.23 -0.0
223,729 + CCNA_00209 0.24 -0.9
223,743 - CCNA_00209 0.25 +0.3
223,761 + CCNA_00209 0.26 -1.2
223,802 + CCNA_00209 0.29 -2.0
223,838 + CCNA_00209 0.31 -0.9
223,838 + CCNA_00209 0.31 -0.7
223,838 + CCNA_00209 0.31 -0.3
223,846 - CCNA_00209 0.31 -0.9
223,846 - CCNA_00209 0.31 -0.0
223,846 - CCNA_00209 0.31 +0.3
223,851 - CCNA_00209 0.32 -1.4
223,962 + CCNA_00209 0.39 -0.0
223,987 + CCNA_00209 0.40 -1.2
223,995 - CCNA_00209 0.41 -1.7
224,041 + CCNA_00209 0.44 -1.6
224,052 - CCNA_00209 0.44 +0.3
224,060 + CCNA_00209 0.45 -0.4
224,136 + CCNA_00209 0.50 -0.4
224,141 - CCNA_00209 0.50 -0.8
224,141 - CCNA_00209 0.50 -1.0
224,187 - CCNA_00209 0.53 +1.0
224,197 - CCNA_00209 0.54 +0.1
224,223 + CCNA_00209 0.55 +0.1
224,231 - CCNA_00209 0.56 -2.8
224,231 - CCNA_00209 0.56 -1.4
224,231 - CCNA_00209 0.56 -1.9
224,231 - CCNA_00209 0.56 -1.8
224,276 + CCNA_00209 0.59 -0.8
224,284 - CCNA_00209 0.59 -1.1
224,301 - CCNA_00209 0.60 -1.0
224,301 - CCNA_00209 0.60 -0.7
224,370 + CCNA_00209 0.65 -1.0
224,378 - CCNA_00209 0.65 -0.8
224,384 - CCNA_00209 0.65 -2.0
224,420 - CCNA_00209 0.68 -1.8
224,425 - CCNA_00209 0.68 -1.7
224,480 + CCNA_00209 0.72 -1.6
224,492 - CCNA_00209 0.72 -1.9
224,502 - CCNA_00209 0.73 -0.9
224,545 - CCNA_00209 0.76 +2.5
224,604 - CCNA_00209 0.79 -0.3
224,644 + CCNA_00209 0.82 -0.9
224,710 + CCNA_00209 0.86 -0.3
224,789 - +1.0
224,789 - -1.7
224,789 - -1.1
224,805 - +0.1
224,823 - -0.0
224,823 - -1.0
224,886 + -0.8
224,886 + -0.2
224,932 - -0.6
224,934 + +0.2
224,993 + -1.6
225,127 + +2.3
225,138 + +2.4
225,143 + +2.1
225,146 - +0.1
225,148 + +1.8
225,148 + +2.3
225,148 + +2.2
225,148 + +2.8
225,156 - +2.1
225,156 - +0.6
225,181 + +1.9
225,181 + +2.1
225,247 + +2.6
225,249 + +2.0
225,273 + +1.7
225,301 + +2.5
225,340 + +2.2
225,340 + +2.4
225,472 - CCNA_00210 0.15 -1.6
225,472 - CCNA_00210 0.15 +1.6
225,508 - CCNA_00210 0.16 +0.2
225,545 - CCNA_00210 0.18 -0.2
225,562 + CCNA_00210 0.19 +2.8
225,572 + CCNA_00210 0.19 +2.4
225,606 - CCNA_00210 0.20 -0.0
225,606 - CCNA_00210 0.20 -3.0
225,622 + CCNA_00210 0.21 +2.1
225,629 - CCNA_00210 0.21 -0.0
225,652 + CCNA_00210 0.22 +2.8
225,653 - CCNA_00210 0.22 -0.8
225,691 + CCNA_00210 0.24 +1.7
225,691 + CCNA_00210 0.24 +2.0
225,691 + CCNA_00210 0.24 +1.6
225,691 + CCNA_00210 0.24 +2.2
225,693 + CCNA_00210 0.24 +2.6
225,693 + CCNA_00210 0.24 +1.4
225,699 - CCNA_00210 0.24 -2.3
225,699 - CCNA_00210 0.24 -0.5
225,708 + CCNA_00210 0.25 +2.1
225,817 - CCNA_00210 0.29 -2.3
225,846 - CCNA_00210 0.30 -1.6
225,899 + CCNA_00210 0.33 +2.0
225,907 - CCNA_00210 0.33 +0.7
225,926 + CCNA_00210 0.34 +2.6

Or see this region's nucleotide sequence