Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3843

Experiment: nitrate 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3842 and Ac3H11_3843 are separated by 268 nucleotidesAc3H11_3843 and Ac3H11_3844 are separated by 2 nucleotidesAc3H11_3844 and Ac3H11_3845 overlap by 35 nucleotides Ac3H11_3842 - Large protein containing transglutaminase-like domain, at 58,466 to 61,963 _3842 Ac3H11_3843 - Protein containing domains DUF404, DUF407, DUF403, at 62,232 to 64,901 _3843 Ac3H11_3844 - Protein containing transglutaminase-like domain, putative cysteine protease, at 64,904 to 65,872 _3844 Ac3H11_3845 - Protein containing domains DUF403, at 65,838 to 66,797 _3845 Position (kb) 62 63 64 65Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 61.514 kb on + strand, within Ac3H11_3842at 61.515 kb on - strand, within Ac3H11_3842at 61.515 kb on - strand, within Ac3H11_3842at 61.653 kb on - strandat 61.653 kb on - strandat 61.763 kb on + strandat 61.794 kb on - strandat 61.794 kb on - strandat 61.794 kb on - strandat 61.817 kb on + strandat 61.818 kb on - strandat 61.818 kb on - strandat 61.986 kb on + strandat 61.987 kb on - strandat 62.096 kb on + strandat 62.096 kb on + strandat 62.096 kb on + strandat 62.096 kb on + strandat 62.096 kb on + strandat 62.096 kb on + strandat 62.096 kb on + strandat 62.096 kb on + strandat 62.097 kb on - strandat 62.097 kb on - strandat 62.097 kb on - strandat 62.097 kb on - strandat 62.097 kb on - strandat 62.118 kb on + strandat 62.118 kb on + strandat 62.119 kb on - strandat 62.119 kb on - strandat 62.119 kb on - strandat 62.119 kb on - strandat 62.541 kb on + strand, within Ac3H11_3843at 62.541 kb on + strand, within Ac3H11_3843at 62.541 kb on + strand, within Ac3H11_3843at 62.542 kb on - strand, within Ac3H11_3843at 62.542 kb on - strand, within Ac3H11_3843at 62.542 kb on - strand, within Ac3H11_3843at 62.542 kb on - strand, within Ac3H11_3843at 62.542 kb on - strand, within Ac3H11_3843at 62.542 kb on - strand, within Ac3H11_3843at 62.551 kb on - strand, within Ac3H11_3843at 62.551 kb on - strand, within Ac3H11_3843at 62.688 kb on + strand, within Ac3H11_3843at 62.688 kb on + strand, within Ac3H11_3843at 62.688 kb on + strand, within Ac3H11_3843at 62.689 kb on - strand, within Ac3H11_3843at 62.689 kb on - strand, within Ac3H11_3843at 62.689 kb on - strand, within Ac3H11_3843at 62.689 kb on - strand, within Ac3H11_3843at 62.755 kb on - strand, within Ac3H11_3843at 62.884 kb on + strand, within Ac3H11_3843at 62.885 kb on - strand, within Ac3H11_3843at 62.889 kb on + strand, within Ac3H11_3843at 62.889 kb on + strand, within Ac3H11_3843at 62.889 kb on + strand, within Ac3H11_3843at 62.889 kb on + strand, within Ac3H11_3843at 62.889 kb on + strand, within Ac3H11_3843at 62.889 kb on + strand, within Ac3H11_3843at 62.889 kb on + strand, within Ac3H11_3843at 62.889 kb on + strand, within Ac3H11_3843at 62.973 kb on + strand, within Ac3H11_3843at 62.973 kb on + strand, within Ac3H11_3843at 62.973 kb on + strand, within Ac3H11_3843at 62.974 kb on - strand, within Ac3H11_3843at 62.974 kb on - strand, within Ac3H11_3843at 63.054 kb on + strand, within Ac3H11_3843at 63.054 kb on + strand, within Ac3H11_3843at 63.055 kb on - strand, within Ac3H11_3843at 63.066 kb on + strand, within Ac3H11_3843at 63.066 kb on + strand, within Ac3H11_3843at 63.066 kb on + strand, within Ac3H11_3843at 63.067 kb on - strand, within Ac3H11_3843at 63.067 kb on - strand, within Ac3H11_3843at 63.081 kb on + strand, within Ac3H11_3843at 63.081 kb on + strand, within Ac3H11_3843at 63.093 kb on + strand, within Ac3H11_3843at 63.094 kb on - strand, within Ac3H11_3843at 63.150 kb on + strand, within Ac3H11_3843at 63.151 kb on - strand, within Ac3H11_3843at 63.151 kb on - strand, within Ac3H11_3843at 63.151 kb on - strand, within Ac3H11_3843at 63.579 kb on + strand, within Ac3H11_3843at 63.580 kb on - strand, within Ac3H11_3843at 63.580 kb on - strand, within Ac3H11_3843at 63.595 kb on - strand, within Ac3H11_3843at 63.946 kb on - strand, within Ac3H11_3843at 64.170 kb on + strand, within Ac3H11_3843at 64.170 kb on + strand, within Ac3H11_3843at 64.311 kb on + strand, within Ac3H11_3843at 64.311 kb on + strand, within Ac3H11_3843at 64.312 kb on - strand, within Ac3H11_3843at 64.563 kb on + strand, within Ac3H11_3843at 64.564 kb on - strand, within Ac3H11_3843at 64.779 kb on + strandat 64.797 kb on + strandat 64.797 kb on + strandat 64.797 kb on + strandat 64.798 kb on - strandat 64.798 kb on - strandat 64.798 kb on - strandat 64.855 kb on - strandat 64.855 kb on - strandat 64.891 kb on + strandat 64.891 kb on + strandat 64.892 kb on - strandat 64.892 kb on - strandat 64.892 kb on - strandat 64.892 kb on - strandat 64.892 kb on - strandat 64.934 kb on + strandat 64.935 kb on - strandat 64.935 kb on - strandat 64.940 kb on + strandat 64.941 kb on - strandat 65.231 kb on + strand, within Ac3H11_3844at 65.231 kb on + strand, within Ac3H11_3844at 65.231 kb on + strand, within Ac3H11_3844at 65.267 kb on + strand, within Ac3H11_3844at 65.267 kb on + strand, within Ac3H11_3844at 65.267 kb on + strand, within Ac3H11_3844at 65.267 kb on + strand, within Ac3H11_3844at 65.268 kb on - strand, within Ac3H11_3844at 65.268 kb on - strand, within Ac3H11_3844at 65.268 kb on - strand, within Ac3H11_3844at 65.268 kb on - strand, within Ac3H11_3844at 65.268 kb on - strand, within Ac3H11_3844at 65.268 kb on - strand, within Ac3H11_3844at 65.268 kb on - strand, within Ac3H11_3844at 65.268 kb on - strand, within Ac3H11_3844at 65.268 kb on - strand, within Ac3H11_3844at 65.298 kb on - strand, within Ac3H11_3844at 65.381 kb on + strand, within Ac3H11_3844at 65.382 kb on - strand, within Ac3H11_3844at 65.382 kb on - strand, within Ac3H11_3844at 65.382 kb on - strand, within Ac3H11_3844at 65.507 kb on + strand, within Ac3H11_3844at 65.508 kb on - strand, within Ac3H11_3844at 65.508 kb on - strand, within Ac3H11_3844at 65.508 kb on - strand, within Ac3H11_3844at 65.520 kb on - strand, within Ac3H11_3844at 65.687 kb on + strand, within Ac3H11_3844at 65.687 kb on + strand, within Ac3H11_3844at 65.687 kb on + strand, within Ac3H11_3844at 65.687 kb on + strand, within Ac3H11_3844at 65.687 kb on + strand, within Ac3H11_3844at 65.687 kb on + strand, within Ac3H11_3844at 65.687 kb on + strand, within Ac3H11_3844at 65.688 kb on - strand, within Ac3H11_3844at 65.688 kb on - strand, within Ac3H11_3844at 65.714 kb on + strand, within Ac3H11_3844at 65.715 kb on - strand, within Ac3H11_3844at 65.884 kb on - strandat 65.884 kb on - strandat 65.884 kb on - strandat 65.884 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 20 mM
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61,514 + Ac3H11_3842 0.87 -0.2
61,515 - Ac3H11_3842 0.87 -0.2
61,515 - Ac3H11_3842 0.87 -0.3
61,653 - -1.9
61,653 - -0.5
61,763 + +0.3
61,794 - -0.4
61,794 - -0.0
61,794 - +0.7
61,817 + -1.6
61,818 - +0.2
61,818 - +0.2
61,986 + -0.3
61,987 - +0.2
62,096 + -0.2
62,096 + -0.6
62,096 + +0.0
62,096 + -0.0
62,096 + -0.6
62,096 + +0.3
62,096 + +0.8
62,096 + +0.4
62,097 - -0.0
62,097 - -0.3
62,097 - +0.1
62,097 - -2.2
62,097 - -0.7
62,118 + +0.1
62,118 + +0.1
62,119 - -2.5
62,119 - +0.2
62,119 - -0.6
62,119 - -0.0
62,541 + Ac3H11_3843 0.12 +0.2
62,541 + Ac3H11_3843 0.12 +0.8
62,541 + Ac3H11_3843 0.12 -0.1
62,542 - Ac3H11_3843 0.12 -1.8
62,542 - Ac3H11_3843 0.12 -0.6
62,542 - Ac3H11_3843 0.12 +0.6
62,542 - Ac3H11_3843 0.12 +0.3
62,542 - Ac3H11_3843 0.12 +0.1
62,542 - Ac3H11_3843 0.12 -1.3
62,551 - Ac3H11_3843 0.12 +0.6
62,551 - Ac3H11_3843 0.12 -0.4
62,688 + Ac3H11_3843 0.17 -0.8
62,688 + Ac3H11_3843 0.17 +0.7
62,688 + Ac3H11_3843 0.17 +0.4
62,689 - Ac3H11_3843 0.17 +0.3
62,689 - Ac3H11_3843 0.17 +1.2
62,689 - Ac3H11_3843 0.17 +1.1
62,689 - Ac3H11_3843 0.17 -0.4
62,755 - Ac3H11_3843 0.20 -0.2
62,884 + Ac3H11_3843 0.24 -0.3
62,885 - Ac3H11_3843 0.24 +0.4
62,889 + Ac3H11_3843 0.25 -0.7
62,889 + Ac3H11_3843 0.25 +0.6
62,889 + Ac3H11_3843 0.25 +1.5
62,889 + Ac3H11_3843 0.25 +0.4
62,889 + Ac3H11_3843 0.25 +0.9
62,889 + Ac3H11_3843 0.25 +1.0
62,889 + Ac3H11_3843 0.25 -0.0
62,889 + Ac3H11_3843 0.25 -0.9
62,973 + Ac3H11_3843 0.28 +1.7
62,973 + Ac3H11_3843 0.28 -0.6
62,973 + Ac3H11_3843 0.28 -0.5
62,974 - Ac3H11_3843 0.28 +0.2
62,974 - Ac3H11_3843 0.28 +0.3
63,054 + Ac3H11_3843 0.31 -0.6
63,054 + Ac3H11_3843 0.31 -0.7
63,055 - Ac3H11_3843 0.31 -0.0
63,066 + Ac3H11_3843 0.31 -1.1
63,066 + Ac3H11_3843 0.31 +1.4
63,066 + Ac3H11_3843 0.31 -0.6
63,067 - Ac3H11_3843 0.31 +0.1
63,067 - Ac3H11_3843 0.31 -0.1
63,081 + Ac3H11_3843 0.32 +0.8
63,081 + Ac3H11_3843 0.32 -0.5
63,093 + Ac3H11_3843 0.32 -0.7
63,094 - Ac3H11_3843 0.32 -0.9
63,150 + Ac3H11_3843 0.34 -0.7
63,151 - Ac3H11_3843 0.34 -0.9
63,151 - Ac3H11_3843 0.34 -2.2
63,151 - Ac3H11_3843 0.34 -0.0
63,579 + Ac3H11_3843 0.50 -0.3
63,580 - Ac3H11_3843 0.50 +1.6
63,580 - Ac3H11_3843 0.50 -0.3
63,595 - Ac3H11_3843 0.51 +1.1
63,946 - Ac3H11_3843 0.64 -0.4
64,170 + Ac3H11_3843 0.73 -0.1
64,170 + Ac3H11_3843 0.73 +0.8
64,311 + Ac3H11_3843 0.78 +0.2
64,311 + Ac3H11_3843 0.78 -0.9
64,312 - Ac3H11_3843 0.78 +0.5
64,563 + Ac3H11_3843 0.87 +1.3
64,564 - Ac3H11_3843 0.87 +0.4
64,779 + +0.1
64,797 + +2.3
64,797 + -0.3
64,797 + -1.2
64,798 - -0.4
64,798 - +0.4
64,798 - -0.8
64,855 - +1.2
64,855 - +0.7
64,891 + +1.4
64,891 + +0.9
64,892 - -1.9
64,892 - -0.4
64,892 - +0.5
64,892 - -1.8
64,892 - -0.1
64,934 + -0.5
64,935 - -0.1
64,935 - -0.4
64,940 + -0.2
64,941 - +0.7
65,231 + Ac3H11_3844 0.34 +0.3
65,231 + Ac3H11_3844 0.34 +1.5
65,231 + Ac3H11_3844 0.34 +0.3
65,267 + Ac3H11_3844 0.37 +0.2
65,267 + Ac3H11_3844 0.37 -0.2
65,267 + Ac3H11_3844 0.37 -1.0
65,267 + Ac3H11_3844 0.37 -0.5
65,268 - Ac3H11_3844 0.38 +0.3
65,268 - Ac3H11_3844 0.38 +0.6
65,268 - Ac3H11_3844 0.38 -0.9
65,268 - Ac3H11_3844 0.38 -1.3
65,268 - Ac3H11_3844 0.38 -0.7
65,268 - Ac3H11_3844 0.38 -0.0
65,268 - Ac3H11_3844 0.38 +0.1
65,268 - Ac3H11_3844 0.38 -0.5
65,268 - Ac3H11_3844 0.38 -0.0
65,298 - Ac3H11_3844 0.41 +1.7
65,381 + Ac3H11_3844 0.49 +1.2
65,382 - Ac3H11_3844 0.49 -0.3
65,382 - Ac3H11_3844 0.49 +0.1
65,382 - Ac3H11_3844 0.49 +0.1
65,507 + Ac3H11_3844 0.62 -0.4
65,508 - Ac3H11_3844 0.62 -0.3
65,508 - Ac3H11_3844 0.62 -0.9
65,508 - Ac3H11_3844 0.62 +1.3
65,520 - Ac3H11_3844 0.64 -2.9
65,687 + Ac3H11_3844 0.81 +0.3
65,687 + Ac3H11_3844 0.81 +0.3
65,687 + Ac3H11_3844 0.81 -0.5
65,687 + Ac3H11_3844 0.81 +0.2
65,687 + Ac3H11_3844 0.81 -2.3
65,687 + Ac3H11_3844 0.81 -0.8
65,687 + Ac3H11_3844 0.81 +1.7
65,688 - Ac3H11_3844 0.81 +0.0
65,688 - Ac3H11_3844 0.81 +0.3
65,714 + Ac3H11_3844 0.84 -0.9
65,715 - Ac3H11_3844 0.84 -1.0
65,884 - +0.1
65,884 - +0.6
65,884 - +0.9
65,884 - +0.3

Or see this region's nucleotide sequence