Experiment: nitrate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3607 and Ac3H11_3608 are separated by 137 nucleotides Ac3H11_3608 and Ac3H11_3609 are separated by 30 nucleotides Ac3H11_3609 and Ac3H11_3610 are separated by 90 nucleotides
Ac3H11_3607 - Metallo-beta-lactamase superfamily protein, at 160,272 to 161,240
_3607
Ac3H11_3608 - hypothetical protein, at 161,378 to 161,746
_3608
Ac3H11_3609 - Transcriptional regulator, IclR family, at 161,777 to 162,529
_3609
Ac3H11_3610 - Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-), at 162,620 to 163,465
_3610
Position (kb) 161
162 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 160.492 kb on + strand, within Ac3H11_3607 at 160.492 kb on + strand, within Ac3H11_3607 at 160.493 kb on - strand, within Ac3H11_3607 at 160.493 kb on - strand, within Ac3H11_3607 at 160.493 kb on - strand, within Ac3H11_3607 at 160.552 kb on + strand, within Ac3H11_3607 at 160.802 kb on - strand, within Ac3H11_3607 at 160.954 kb on + strand, within Ac3H11_3607 at 160.955 kb on - strand, within Ac3H11_3607 at 160.969 kb on + strand, within Ac3H11_3607 at 160.969 kb on + strand, within Ac3H11_3607 at 160.970 kb on - strand, within Ac3H11_3607 at 160.970 kb on - strand, within Ac3H11_3607 at 161.191 kb on + strand at 161.557 kb on - strand, within Ac3H11_3608 at 161.669 kb on + strand, within Ac3H11_3608 at 161.669 kb on + strand, within Ac3H11_3608 at 161.669 kb on + strand, within Ac3H11_3608 at 161.669 kb on + strand, within Ac3H11_3608 at 161.669 kb on + strand, within Ac3H11_3608 at 161.670 kb on - strand, within Ac3H11_3608 at 161.670 kb on - strand, within Ac3H11_3608 at 161.670 kb on - strand, within Ac3H11_3608 at 161.670 kb on - strand, within Ac3H11_3608 at 161.670 kb on - strand, within Ac3H11_3608 at 161.670 kb on - strand, within Ac3H11_3608 at 161.693 kb on - strand, within Ac3H11_3608 at 161.718 kb on + strand at 161.734 kb on - strand at 161.746 kb on + strand at 161.746 kb on + strand at 161.746 kb on + strand at 161.746 kb on + strand at 161.746 kb on + strand at 161.746 kb on + strand at 161.746 kb on + strand at 161.746 kb on + strand at 161.746 kb on + strand at 161.747 kb on - strand at 161.747 kb on - strand at 161.747 kb on - strand at 161.747 kb on - strand at 161.747 kb on - strand at 161.747 kb on - strand at 161.747 kb on - strand at 161.747 kb on - strand at 161.747 kb on - strand at 161.747 kb on - strand at 161.747 kb on - strand at 161.747 kb on - strand at 161.747 kb on - strand at 161.763 kb on + strand at 161.778 kb on + strand at 161.779 kb on - strand at 161.779 kb on - strand at 161.835 kb on - strand at 161.835 kb on - strand at 161.835 kb on - strand at 161.945 kb on + strand, within Ac3H11_3609 at 161.945 kb on + strand, within Ac3H11_3609 at 161.945 kb on + strand, within Ac3H11_3609 at 161.945 kb on + strand, within Ac3H11_3609 at 161.946 kb on - strand, within Ac3H11_3609 at 161.946 kb on - strand, within Ac3H11_3609 at 161.946 kb on - strand, within Ac3H11_3609 at 161.946 kb on - strand, within Ac3H11_3609 at 161.970 kb on + strand, within Ac3H11_3609 at 161.970 kb on + strand, within Ac3H11_3609 at 162.195 kb on + strand, within Ac3H11_3609 at 162.195 kb on + strand, within Ac3H11_3609 at 162.195 kb on + strand, within Ac3H11_3609 at 162.195 kb on + strand, within Ac3H11_3609 at 162.195 kb on + strand, within Ac3H11_3609 at 162.345 kb on + strand, within Ac3H11_3609 at 162.346 kb on - strand, within Ac3H11_3609
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 20 mM remove 160,492 + Ac3H11_3607 0.23 +2.9 160,492 + Ac3H11_3607 0.23 -0.2 160,493 - Ac3H11_3607 0.23 +0.4 160,493 - Ac3H11_3607 0.23 -0.1 160,493 - Ac3H11_3607 0.23 -1.2 160,552 + Ac3H11_3607 0.29 -0.3 160,802 - Ac3H11_3607 0.55 -1.1 160,954 + Ac3H11_3607 0.70 +0.3 160,955 - Ac3H11_3607 0.70 +0.9 160,969 + Ac3H11_3607 0.72 +0.9 160,969 + Ac3H11_3607 0.72 +0.4 160,970 - Ac3H11_3607 0.72 -0.7 160,970 - Ac3H11_3607 0.72 +0.3 161,191 + +0.2 161,557 - Ac3H11_3608 0.49 +0.1 161,669 + Ac3H11_3608 0.79 +1.9 161,669 + Ac3H11_3608 0.79 +0.3 161,669 + Ac3H11_3608 0.79 -0.2 161,669 + Ac3H11_3608 0.79 -0.3 161,669 + Ac3H11_3608 0.79 -0.3 161,670 - Ac3H11_3608 0.79 -2.1 161,670 - Ac3H11_3608 0.79 -1.2 161,670 - Ac3H11_3608 0.79 -0.9 161,670 - Ac3H11_3608 0.79 +1.1 161,670 - Ac3H11_3608 0.79 -0.5 161,670 - Ac3H11_3608 0.79 -0.3 161,693 - Ac3H11_3608 0.85 -0.3 161,718 + +0.3 161,734 - +2.2 161,746 + +1.5 161,746 + -0.0 161,746 + -0.8 161,746 + -1.5 161,746 + -0.0 161,746 + +1.4 161,746 + +1.6 161,746 + +0.6 161,746 + +0.3 161,747 - +0.6 161,747 - -1.7 161,747 - -0.6 161,747 - -0.3 161,747 - +0.2 161,747 - +0.8 161,747 - -1.9 161,747 - +0.4 161,747 - +1.0 161,747 - -0.6 161,747 - -0.5 161,747 - +0.3 161,747 - -0.2 161,763 + -1.7 161,778 + -0.0 161,779 - -0.1 161,779 - +0.1 161,835 - -0.6 161,835 - +0.1 161,835 - -0.1 161,945 + Ac3H11_3609 0.22 +0.9 161,945 + Ac3H11_3609 0.22 +1.3 161,945 + Ac3H11_3609 0.22 +0.9 161,945 + Ac3H11_3609 0.22 -0.0 161,946 - Ac3H11_3609 0.22 +0.1 161,946 - Ac3H11_3609 0.22 +0.4 161,946 - Ac3H11_3609 0.22 -1.4 161,946 - Ac3H11_3609 0.22 -0.3 161,970 + Ac3H11_3609 0.26 +1.0 161,970 + Ac3H11_3609 0.26 -0.1 162,195 + Ac3H11_3609 0.56 +0.1 162,195 + Ac3H11_3609 0.56 +0.3 162,195 + Ac3H11_3609 0.56 +0.1 162,195 + Ac3H11_3609 0.56 -0.7 162,195 + Ac3H11_3609 0.56 +0.0 162,345 + Ac3H11_3609 0.75 +1.3 162,346 - Ac3H11_3609 0.76 -0.7
Or see this region's nucleotide sequence