Experiment: Urea (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS22045 and AZOBR_RS22050 are separated by 54 nucleotides AZOBR_RS22050 and AZOBR_RS22055 are separated by 99 nucleotides AZOBR_RS22055 and AZOBR_RS22060 overlap by 4 nucleotides AZOBR_RS22060 and AZOBR_RS22065 overlap by 4 nucleotides
AZOBR_RS22045: AZOBR_RS22045 - GTP pyrophosphokinase, at 1,714,241 to 1,716,412
_RS22045
AZOBR_RS22050: AZOBR_RS22050 - histidine triad (HIT) protein, at 1,716,467 to 1,716,889
_RS22050
AZOBR_RS22055: AZOBR_RS22055 - pyridoxine 5'-phosphate synthase, at 1,716,989 to 1,717,741
_RS22055
AZOBR_RS22060: AZOBR_RS22060 - 4'-phosphopantetheinyl transferase, at 1,717,738 to 1,718,205
_RS22060
AZOBR_RS22065: AZOBR_RS22065 - signal peptidase, at 1,718,202 to 1,718,972
_RS22065
Position (kb) 1716
1717
1718 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1716.003 kb on - strand, within AZOBR_RS22045 at 1716.785 kb on + strand, within AZOBR_RS22050 at 1716.921 kb on + strand at 1716.921 kb on + strand at 1716.921 kb on + strand at 1716.921 kb on + strand at 1716.921 kb on + strand at 1716.921 kb on + strand at 1716.988 kb on + strand at 1717.580 kb on + strand, within AZOBR_RS22055
Per-strain Table
Position Strand Gene LocusTag Fraction Urea (N) remove 1,716,003 - AZOBR_RS22045 0.81 +0.6 1,716,785 + AZOBR_RS22050 0.75 -0.0 1,716,921 + -0.3 1,716,921 + -0.1 1,716,921 + -0.7 1,716,921 + +0.1 1,716,921 + +0.6 1,716,921 + +1.2 1,716,988 + +0.5 1,717,580 + AZOBR_RS22055 0.78 -3.3
Or see this region's nucleotide sequence