Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS08705

Experiment: Urea (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS08695 and AZOBR_RS08700 are separated by 55 nucleotidesAZOBR_RS08700 and AZOBR_RS08705 are separated by 16 nucleotidesAZOBR_RS08705 and AZOBR_RS08710 are separated by 128 nucleotidesAZOBR_RS08710 and AZOBR_RS08715 are separated by 88 nucleotides AZOBR_RS08695: AZOBR_RS08695 - 3-mercaptopyruvate sulfurtransferase, at 1,819,790 to 1,820,653 _RS08695 AZOBR_RS08700: AZOBR_RS08700 - Ala-tRNA(Pro) hydrolase, at 1,820,709 to 1,821,416 _RS08700 AZOBR_RS08705: AZOBR_RS08705 - cysteine synthase, at 1,821,433 to 1,822,437 _RS08705 AZOBR_RS08710: AZOBR_RS08710 - ADP-ribose pyrophosphatase, at 1,822,566 to 1,823,174 _RS08710 AZOBR_RS08715: AZOBR_RS08715 - serine protease, at 1,823,263 to 1,824,150 _RS08715 Position (kb) 1821 1822 1823Strain fitness (log2 ratio) -1 0 1at 1820.674 kb on + strandat 1820.675 kb on - strandat 1820.675 kb on - strandat 1820.675 kb on - strandat 1820.675 kb on - strandat 1820.675 kb on - strandat 1820.675 kb on - strandat 1821.316 kb on + strand, within AZOBR_RS08700at 1821.779 kb on + strand, within AZOBR_RS08705at 1821.779 kb on + strand, within AZOBR_RS08705at 1821.779 kb on + strand, within AZOBR_RS08705at 1821.780 kb on - strand, within AZOBR_RS08705at 1822.058 kb on + strand, within AZOBR_RS08705at 1822.058 kb on + strand, within AZOBR_RS08705at 1822.058 kb on + strand, within AZOBR_RS08705at 1822.058 kb on + strand, within AZOBR_RS08705at 1822.058 kb on + strand, within AZOBR_RS08705at 1822.058 kb on + strand, within AZOBR_RS08705at 1822.059 kb on - strand, within AZOBR_RS08705at 1822.059 kb on - strand, within AZOBR_RS08705at 1822.059 kb on - strand, within AZOBR_RS08705at 1822.059 kb on - strand, within AZOBR_RS08705at 1822.059 kb on - strand, within AZOBR_RS08705at 1822.059 kb on - strand, within AZOBR_RS08705at 1822.059 kb on - strand, within AZOBR_RS08705at 1822.059 kb on - strand, within AZOBR_RS08705at 1822.059 kb on - strand, within AZOBR_RS08705at 1822.059 kb on - strand, within AZOBR_RS08705at 1822.059 kb on - strand, within AZOBR_RS08705at 1822.228 kb on - strand, within AZOBR_RS08705at 1822.476 kb on + strandat 1822.567 kb on + strandat 1822.792 kb on + strand, within AZOBR_RS08710at 1822.793 kb on - strand, within AZOBR_RS08710at 1822.793 kb on - strand, within AZOBR_RS08710at 1822.814 kb on - strand, within AZOBR_RS08710at 1823.009 kb on - strand, within AZOBR_RS08710at 1823.105 kb on - strand, within AZOBR_RS08710at 1823.219 kb on + strandat 1823.219 kb on + strandat 1823.294 kb on + strandat 1823.295 kb on - strandat 1823.396 kb on + strand, within AZOBR_RS08715

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Per-strain Table

Position Strand Gene LocusTag Fraction Urea (N)
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1,820,674 + +0.7
1,820,675 - +0.2
1,820,675 - -0.8
1,820,675 - -0.5
1,820,675 - -0.4
1,820,675 - -0.0
1,820,675 - +0.4
1,821,316 + AZOBR_RS08700 0.86 -0.2
1,821,779 + AZOBR_RS08705 0.34 +0.2
1,821,779 + AZOBR_RS08705 0.34 -0.7
1,821,779 + AZOBR_RS08705 0.34 +0.5
1,821,780 - AZOBR_RS08705 0.35 -0.3
1,822,058 + AZOBR_RS08705 0.62 -0.3
1,822,058 + AZOBR_RS08705 0.62 -1.3
1,822,058 + AZOBR_RS08705 0.62 +0.0
1,822,058 + AZOBR_RS08705 0.62 -0.0
1,822,058 + AZOBR_RS08705 0.62 +0.3
1,822,058 + AZOBR_RS08705 0.62 -0.1
1,822,059 - AZOBR_RS08705 0.62 +0.3
1,822,059 - AZOBR_RS08705 0.62 +0.3
1,822,059 - AZOBR_RS08705 0.62 -0.7
1,822,059 - AZOBR_RS08705 0.62 +0.4
1,822,059 - AZOBR_RS08705 0.62 -0.4
1,822,059 - AZOBR_RS08705 0.62 +0.2
1,822,059 - AZOBR_RS08705 0.62 -1.1
1,822,059 - AZOBR_RS08705 0.62 -1.1
1,822,059 - AZOBR_RS08705 0.62 -0.6
1,822,059 - AZOBR_RS08705 0.62 -0.5
1,822,059 - AZOBR_RS08705 0.62 +0.0
1,822,228 - AZOBR_RS08705 0.79 -0.8
1,822,476 + -0.1
1,822,567 + +0.5
1,822,792 + AZOBR_RS08710 0.37 +0.3
1,822,793 - AZOBR_RS08710 0.37 -0.7
1,822,793 - AZOBR_RS08710 0.37 -0.3
1,822,814 - AZOBR_RS08710 0.41 +0.6
1,823,009 - AZOBR_RS08710 0.73 +0.4
1,823,105 - AZOBR_RS08710 0.89 +0.4
1,823,219 + +0.9
1,823,219 + +0.8
1,823,294 + -0.3
1,823,295 - -0.0
1,823,396 + AZOBR_RS08715 0.15 -1.2

Or see this region's nucleotide sequence