Experiment: Urea (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS04800 and AZOBR_RS04805 are separated by 18 nucleotides AZOBR_RS04805 and AZOBR_RS04810 are separated by 60 nucleotides
AZOBR_RS04800: AZOBR_RS04800 - pyruvate dehydrogenase subunit beta, at 1,009,419 to 1,010,450
_RS04800
AZOBR_RS04805: AZOBR_RS04805 - dihydrolipoyllysine acetyltransferase, at 1,010,469 to 1,011,602
_RS04805
AZOBR_RS04810: AZOBR_RS04810 - shikimate 5-dehydrogenase, at 1,011,663 to 1,012,448
_RS04810
Position (kb)
1010
1011
1012 Strain fitness (log2 ratio)
-1
0
1 at 1009.636 kb on - strand, within AZOBR_RS04800 at 1009.755 kb on + strand, within AZOBR_RS04800 at 1009.755 kb on + strand, within AZOBR_RS04800 at 1009.756 kb on - strand, within AZOBR_RS04800 at 1009.756 kb on - strand, within AZOBR_RS04800 at 1009.902 kb on + strand, within AZOBR_RS04800 at 1009.902 kb on + strand, within AZOBR_RS04800 at 1010.010 kb on + strand, within AZOBR_RS04800 at 1010.010 kb on + strand, within AZOBR_RS04800 at 1010.011 kb on - strand, within AZOBR_RS04800 at 1010.011 kb on - strand, within AZOBR_RS04800 at 1010.011 kb on - strand, within AZOBR_RS04800 at 1010.370 kb on + strand at 1010.370 kb on + strand at 1010.370 kb on + strand at 1010.370 kb on + strand at 1010.371 kb on - strand at 1010.371 kb on - strand at 1010.371 kb on - strand at 1010.371 kb on - strand at 1010.371 kb on - strand at 1010.489 kb on + strand at 1010.489 kb on + strand at 1010.489 kb on + strand at 1010.686 kb on - strand, within AZOBR_RS04805 at 1010.853 kb on + strand, within AZOBR_RS04805 at 1010.964 kb on + strand, within AZOBR_RS04805 at 1010.965 kb on - strand, within AZOBR_RS04805 at 1010.965 kb on - strand, within AZOBR_RS04805 at 1010.965 kb on - strand, within AZOBR_RS04805 at 1011.204 kb on + strand, within AZOBR_RS04805 at 1011.204 kb on + strand, within AZOBR_RS04805 at 1011.204 kb on + strand, within AZOBR_RS04805 at 1011.204 kb on + strand, within AZOBR_RS04805 at 1011.318 kb on + strand, within AZOBR_RS04805 at 1011.318 kb on + strand, within AZOBR_RS04805 at 1012.508 kb on + strand at 1012.508 kb on + strand at 1012.508 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Urea (N) remove 1,009,636 - AZOBR_RS04800 0.21 +0.0 1,009,755 + AZOBR_RS04800 0.33 +0.3 1,009,755 + AZOBR_RS04800 0.33 +0.1 1,009,756 - AZOBR_RS04800 0.33 -0.3 1,009,756 - AZOBR_RS04800 0.33 -0.4 1,009,902 + AZOBR_RS04800 0.47 +0.3 1,009,902 + AZOBR_RS04800 0.47 +0.3 1,010,010 + AZOBR_RS04800 0.57 -0.7 1,010,010 + AZOBR_RS04800 0.57 -0.8 1,010,011 - AZOBR_RS04800 0.57 -0.7 1,010,011 - AZOBR_RS04800 0.57 +0.8 1,010,011 - AZOBR_RS04800 0.57 +0.5 1,010,370 + -0.4 1,010,370 + -0.2 1,010,370 + -0.1 1,010,370 + +0.0 1,010,371 - -0.6 1,010,371 - -0.8 1,010,371 - -0.4 1,010,371 - +0.0 1,010,371 - -0.2 1,010,489 + -0.1 1,010,489 + +0.1 1,010,489 + +0.1 1,010,686 - AZOBR_RS04805 0.19 +0.4 1,010,853 + AZOBR_RS04805 0.34 +0.3 1,010,964 + AZOBR_RS04805 0.44 -0.3 1,010,965 - AZOBR_RS04805 0.44 +1.0 1,010,965 - AZOBR_RS04805 0.44 +0.5 1,010,965 - AZOBR_RS04805 0.44 +0.6 1,011,204 + AZOBR_RS04805 0.65 -0.5 1,011,204 + AZOBR_RS04805 0.65 -0.1 1,011,204 + AZOBR_RS04805 0.65 +0.4 1,011,204 + AZOBR_RS04805 0.65 +0.3 1,011,318 + AZOBR_RS04805 0.75 -0.3 1,011,318 + AZOBR_RS04805 0.75 +0.1 1,012,508 + -0.1 1,012,508 + +0.6 1,012,508 + -0.6
Or see this region's nucleotide sequence